LYO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.43Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| C | O | doub | 1.21Å | 1.26Å | |
| CB | CG | sing | 1.53Å | 1.53Å | |
| CG | OG | sing | 1.43Å | 1.42Å | |
| CG | CD | sing | 1.53Å | 1.53Å | |
| CD | CE | sing | 1.53Å | 1.54Å | |
| CE | NZ | sing | 1.47Å | 1.45Å | |
| C | OXT | sing | 1.34Å | 1.39Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| OG | HOG | sing | 0.97Å | 0.95Å | |
| CD | HD1 | sing | 1.09Å | 1.10Å | |
| CD | HD2 | sing | 1.09Å | 1.10Å | |
| CE | HE1 | sing | 1.09Å | 1.10Å | |
| CE | HE2 | sing | 1.09Å | 1.10Å | |
| NZ | HZ1 | sing | 1.01Å | 1.00Å | |
| NZ | HZ2 | sing | 1.01Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | C | 112.5° | 109.5° |
| N | CA | CB | 109.5° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.4° | 111.0° |
| N | CA | HA | 106.9° | 109.5° |
| C | CA | CB | 107.9° | 109.5° |
| CA | C | O | 118.8° | 120.0° |
| CA | C | OXT | 118.3° | 120.0° |
| C | CA | HA | 108.5° | 109.5° |
| CA | CB | CG | 116.0° | 109.5° |
| CB | CA | HA | 111.6° | 109.4° |
| CA | CB | HB1 | 107.4° | 109.5° |
| CA | CB | HB2 | 107.3° | 109.5° |
| O | C | OXT | 122.6° | 120.0° |
| CB | CG | OG | 109.2° | 109.5° |
| CB | CG | CD | 110.4° | 109.5° |
| CG | CB | HB1 | 107.4° | 109.5° |
| CG | CB | HB2 | 107.4° | 109.5° |
| CB | CG | HG | 108.3° | 109.5° |
| OG | CG | CD | 107.1° | 109.5° |
| OG | CG | HG | 111.5° | 109.5° |
| CG | OG | HOG | 109.5° | 114.0° |
| CG | CD | CE | 114.7° | 109.5° |
| CD | CG | HG | 110.4° | 109.5° |
| CG | CD | HD1 | 107.7° | 109.5° |
| CG | CD | HD2 | 107.7° | 109.5° |
| CD | CE | NZ | 110.1° | 109.5° |
| CE | CD | HD1 | 107.8° | 109.5° |
| CE | CD | HD2 | 107.8° | 109.5° |
| CD | CE | HE1 | 109.3° | 109.5° |
| CD | CE | HE2 | 109.3° | 109.5° |
| NZ | CE | HE1 | 109.3° | 109.4° |
| NZ | CE | HE2 | 109.3° | 109.4° |
| CE | NZ | HZ1 | 109.5° | 111.0° |
| CE | NZ | HZ2 | 109.5° | 111.0° |
| C | OXT | HXT | 109.5° | 117.0° |
| H | N | H2 | 109.4° | 111.0° |
| HB1 | CB | HB2 | 111.5° | 109.4° |
| HD1 | CD | HD2 | 111.1° | 109.5° |
| HE1 | CE | HE2 | 109.7° | 109.4° |
| HZ1 | NZ | HZ2 | 109.5° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | C | CB | 120.9° | 120.0° |
| N | CA | C | HA | 118.1° | 120.0° |
| N | CA | CB | HA | 118.1° | 120.0° |
| N | CA | C | O | 36.8° | 20.0° |
| N | CA | CB | CG | 151.8° | 65.0° |
| N | CA | C | OXT | 149.7° | 160.0° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | HB1 | 31.8° | 55.0° |
| N | CA | CB | HB2 | 88.2° | 175.0° |
| C | CA | CB | HA | 119.1° | 120.0° |
| CA | C | O | OXT | 173.2° | 180.0° |
| C | CA | CB | CG | 85.4° | 175.0° |
| C | CA | N | H | 180.0° | 60.0° |
| C | CA | N | H2 | 60.0° | 176.0° |
| C | CA | CB | HB1 | 154.5° | 65.0° |
| C | CA | CB | HB2 | 34.5° | 55.0° |
| CA | C | OXT | HXT | 173.2° | 180.0° |
| CB | CA | C | O | 84.1° | 100.0° |
| CA | CB | CG | HB1 | 120.0° | 120.0° |
| CA | CB | CG | HB2 | 120.0° | 120.0° |
| CA | CB | CG | OG | 76.9° | 65.0° |
| CA | CB | CG | CD | 165.7° | 175.0° |
| CB | CA | C | OXT | 89.4° | 80.0° |
| CB | CA | N | H | 60.0° | 60.0° |
| CB | CA | N | H2 | 180.0° | 64.0° |
| CA | CB | HB1 | HB2 | 117.3° | 120.0° |
| CA | CB | CG | HG | 44.7° | 55.0° |
| O | C | CA | HA | 154.9° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| CB | CG | OG | CD | 119.5° | 120.0° |
| CB | CG | OG | HG | 119.6° | 120.0° |
| CB | CG | CD | HG | 119.7° | 120.0° |
| CB | CG | CD | CE | 98.1° | 175.0° |
| CG | CB | CA | HA | 33.7° | 55.0° |
| CG | CB | HB1 | HB2 | 117.3° | 120.0° |
| CB | CG | OG | HOG | 180.0° | 60.0° |
| CB | CG | CD | HD1 | 141.9° | 65.0° |
| CB | CG | CD | HD2 | 21.9° | 55.0° |
| OG | CG | CD | HG | 121.5° | 120.0° |
| OG | CG | CD | CE | 143.1° | 65.0° |
| OG | CG | CB | HB1 | 43.1° | 55.0° |
| OG | CG | CB | HB2 | 163.1° | 175.0° |
| OG | CG | CD | HD1 | 23.1° | 55.0° |
| OG | CG | CD | HD2 | 96.9° | 175.0° |
| CG | CD | CE | HD1 | 120.0° | 120.0° |
| CG | CD | CE | HD2 | 120.0° | 120.0° |
| CG | CD | CE | NZ | 52.8° | 180.0° |
| CD | CG | CB | HB1 | 74.3° | 65.0° |
| CD | CG | CB | HB2 | 45.7° | 55.0° |
| CD | CG | OG | HOG | 60.5° | 60.0° |
| CG | CD | HD1 | HD2 | 117.8° | 120.0° |
| CG | CD | CE | HE1 | 172.8° | 60.0° |
| CG | CD | CE | HE2 | 67.2° | 60.0° |
| CD | CE | NZ | HE1 | 120.0° | 120.1° |
| CD | CE | NZ | HE2 | 120.0° | 120.0° |
| CE | CD | CG | HG | 21.5° | 55.0° |
| CE | CD | HD1 | HD2 | 117.9° | 120.0° |
| CD | CE | HE1 | HE2 | 119.7° | 120.1° |
| CD | CE | NZ | HZ1 | 180.0° | 56.0° |
| CD | CE | NZ | HZ2 | 60.0° | 180.0° |
| NZ | CE | CD | HD1 | 67.2° | 60.0° |
| NZ | CE | CD | HD2 | 172.8° | 60.0° |
| NZ | CE | HE1 | HE2 | 119.8° | 119.9° |
| CE | NZ | HZ1 | HZ2 | 120.0° | 123.9° |
| OXT | C | CA | HA | 31.6° | 40.0° |
| H | N | CA | HA | 61.0° | 180.0° |
| H2 | N | CA | HA | 59.0° | 56.0° |
| HA | CA | CB | HB1 | 86.3° | 175.0° |
| HA | CA | CB | HB2 | 153.6° | 65.1° |
| HB1 | CB | CG | HG | 164.7° | 175.0° |
| HB2 | CB | CG | HG | 75.3° | 65.0° |
| HG | CG | OG | HOG | 60.3° | 180.0° |
| HG | CG | CD | HD1 | 98.5° | 175.0° |
| HG | CG | CD | HD2 | 141.6° | 65.0° |
| HD1 | CD | CE | HE1 | 52.9° | 180.0° |
| HD1 | CD | CE | HE2 | 172.8° | 60.0° |
| HD2 | CD | CE | HE1 | 67.2° | 60.0° |
| HD2 | CD | CE | HE2 | 52.8° | 180.0° |
| HE1 | CE | NZ | HZ1 | 60.0° | 64.0° |
| HE1 | CE | NZ | HZ2 | 180.0° | 59.9° |
| HE2 | CE | NZ | HZ1 | 60.0° | 176.1° |
| HE2 | CE | NZ | HZ2 | 60.0° | 60.0° |
