LYK
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CA | C | sing | 1.53Å | 1.52Å | |
| C | O | sing | 1.43Å | 1.23Å | |
| C | OXT | sing | 1.43Å | 1.55Å | |
| CA | N | sing | 1.47Å | 1.45Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| O | HO | sing | 0.97Å | 0.95Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CG | CB | sing | 1.53Å | 1.52Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CE | CD | sing | 1.53Å | 1.52Å | |
| CD | CG | sing | 1.53Å | 1.53Å | |
| CD | HD | sing | 1.09Å | 1.10Å | |
| CD | HDA | sing | 1.09Å | 1.10Å | |
| NZ | CE | sing | 1.47Å | 1.49Å | |
| CE | HE | sing | 1.09Å | 1.10Å | |
| CE | HEA | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| NZ | HNZ | sing | 1.01Å | 1.00Å | |
| NZ | HNZA | sing | 1.01Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| C | H1 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | C | O | 119.4° | 109.5° |
| CA | C | OXT | 124.4° | 109.5° |
| C | CA | N | 111.0° | 109.5° |
| C | CA | CB | 110.3° | 109.5° |
| C | CA | HA | 108.1° | 109.5° |
| CA | C | H1 | 86.3° | 109.5° |
| O | C | OXT | 93.4° | 109.5° |
| C | O | HO | 109.5° | 114.0° |
| O | C | H1 | 120.9° | 109.4° |
| C | OXT | HXT | 109.5° | 114.1° |
| OXT | C | H1 | 115.4° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.4° | 111.0° |
| N | CA | CB | 110.1° | 109.5° |
| N | CA | HA | 108.3° | 109.4° |
| H | N | H2 | 109.5° | 111.0° |
| CB | CA | HA | 109.0° | 109.5° |
| CA | CB | CG | 113.4° | 109.5° |
| CA | CB | HB | 108.2° | 109.5° |
| CA | CB | HBA | 108.2° | 109.5° |
| CG | CB | HB | 108.2° | 109.5° |
| CG | CB | HBA | 108.2° | 109.5° |
| CB | CG | CD | 111.9° | 109.5° |
| CB | CG | HG | 108.7° | 109.4° |
| CB | CG | HGA | 108.7° | 109.5° |
| HB | CB | HBA | 110.7° | 109.4° |
| CE | CD | CG | 111.0° | 109.4° |
| CE | CD | HD | 108.9° | 109.4° |
| CE | CD | HDA | 108.9° | 109.5° |
| CD | CE | NZ | 112.6° | 109.5° |
| CD | CE | HE | 108.4° | 109.5° |
| CD | CE | HEA | 108.5° | 109.5° |
| CG | CD | HD | 109.0° | 109.5° |
| CG | CD | HDA | 109.0° | 109.5° |
| CD | CG | HG | 108.7° | 109.5° |
| CD | CG | HGA | 108.7° | 109.4° |
| HD | CD | HDA | 110.0° | 109.5° |
| NZ | CE | HE | 108.4° | 109.5° |
| NZ | CE | HEA | 108.4° | 109.4° |
| CE | NZ | HNZ | 109.5° | 111.0° |
| CE | NZ | HNZA | 109.5° | 111.0° |
| HE | CE | HEA | 110.5° | 109.5° |
| HG | CG | HGA | 110.2° | 109.5° |
| HNZ | NZ | HNZA | 109.4° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | C | O | OXT | 133.1° | 120.0° |
| CA | C | O | H1 | 104.6° | 120.0° |
| CA | C | OXT | H1 | 103.8° | 120.0° |
| C | CA | N | CB | 122.4° | 120.0° |
| C | CA | N | HA | 118.5° | 120.0° |
| C | CA | N | H | 180.0° | 64.0° |
| C | CA | N | H2 | 60.0° | 60.0° |
| CA | C | O | HO | 180.0° | 180.0° |
| C | CA | CB | HA | 118.5° | 120.0° |
| C | CA | CB | CG | 173.9° | 175.0° |
| C | CA | CB | HB | 66.1° | 65.0° |
| C | CA | CB | HBA | 53.9° | 54.9° |
| CA | C | OXT | HXT | 180.0° | 60.0° |
| O | C | OXT | H1 | 126.7° | 120.0° |
| O | C | CA | N | 145.4° | 65.0° |
| O | C | CA | CB | 92.3° | 175.0° |
| O | C | CA | HA | 26.8° | 55.0° |
| O | C | OXT | HXT | 50.5° | 60.0° |
| OXT | C | CA | N | 27.5° | 55.0° |
| OXT | C | O | HO | 46.9° | 60.0° |
| OXT | C | CA | CB | 149.8° | 65.1° |
| OXT | C | CA | HA | 91.1° | 174.9° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | HA | 118.7° | 119.9° |
| N | CA | CB | CG | 63.3° | 65.0° |
| N | CA | CB | HB | 56.8° | 55.0° |
| N | CA | CB | HBA | 176.7° | 175.0° |
| N | CA | C | H1 | 90.9° | 175.0° |
| H | N | CA | CB | 57.6° | 176.0° |
| H | N | CA | HA | 61.5° | 56.1° |
| H2 | N | CA | CB | 177.6° | 60.0° |
| H2 | N | CA | HA | 58.5° | 180.0° |
| HO | O | C | H1 | 75.4° | 60.0° |
| CA | CB | CG | HB | 120.0° | 120.0° |
| CA | CB | CG | HBA | 120.0° | 120.1° |
| CA | CB | HB | HBA | 118.4° | 120.0° |
| CA | CB | CG | CD | 170.7° | 180.0° |
| CA | CB | CG | HG | 69.3° | 60.0° |
| CA | CB | CG | HGA | 50.6° | 60.0° |
| CB | CA | C | H1 | 31.4° | 55.0° |
| HA | CA | CB | CG | 55.4° | 55.0° |
| HA | CA | CB | HB | 175.4° | 175.0° |
| HA | CA | CB | HBA | 64.6° | 65.1° |
| HA | CA | C | H1 | 150.5° | 65.0° |
| CG | CB | HB | HBA | 118.4° | 120.0° |
| CB | CG | CD | CE | 178.4° | 180.0° |
| CB | CG | CD | HG | 120.0° | 120.0° |
| CB | CG | CD | HGA | 120.0° | 120.0° |
| CB | CG | CD | HD | 61.6° | 60.0° |
| CB | CG | CD | HDA | 58.5° | 60.0° |
| CB | CG | HG | HGA | 119.0° | 120.0° |
| HB | CB | CG | CD | 50.7° | 60.0° |
| HB | CB | CG | HG | 170.7° | 180.0° |
| HB | CB | CG | HGA | 69.4° | 60.0° |
| HBA | CB | CG | CD | 69.3° | 59.9° |
| HBA | CB | CG | HG | 50.7° | 60.0° |
| HBA | CB | CG | HGA | 170.7° | 179.9° |
| CE | CD | CG | HD | 120.0° | 119.9° |
| CE | CD | CG | HDA | 120.0° | 120.0° |
| CE | CD | HD | HDA | 119.3° | 120.0° |
| CD | CE | NZ | HE | 120.0° | 120.0° |
| CD | CE | NZ | HEA | 120.0° | 120.0° |
| CD | CE | HE | HEA | 118.7° | 120.0° |
| CE | CD | CG | HG | 61.6° | 60.0° |
| CE | CD | CG | HGA | 58.4° | 60.0° |
| CD | CE | NZ | HNZ | 180.0° | 56.0° |
| CD | CE | NZ | HNZA | 60.0° | 180.0° |
| CG | CD | HD | HDA | 119.4° | 120.0° |
| CG | CD | CE | NZ | 175.5° | 180.0° |
| CG | CD | CE | HE | 55.5° | 60.0° |
| CG | CD | CE | HEA | 64.5° | 60.1° |
| CD | CG | HG | HGA | 119.0° | 120.0° |
| HD | CD | CE | NZ | 55.5° | 60.0° |
| HD | CD | CE | HE | 64.5° | 60.0° |
| HD | CD | CE | HEA | 175.5° | 180.0° |
| HD | CD | CG | HG | 58.4° | 59.9° |
| HD | CD | CG | HGA | 178.4° | 180.0° |
| HDA | CD | CE | NZ | 64.5° | 60.0° |
| HDA | CD | CE | HE | 175.5° | 180.0° |
| HDA | CD | CE | HEA | 55.5° | 60.0° |
| HDA | CD | CG | HG | 178.4° | 180.0° |
| HDA | CD | CG | HGA | 61.6° | 60.0° |
| NZ | CE | HE | HEA | 118.7° | 120.0° |
| CE | NZ | HNZ | HNZA | 120.0° | 124.0° |
| HE | CE | NZ | HNZ | 60.0° | 64.0° |
| HE | CE | NZ | HNZA | 180.0° | 60.0° |
| HEA | CE | NZ | HNZ | 60.0° | 176.0° |
| HEA | CE | NZ | HNZA | 60.0° | 60.0° |
| HXT | OXT | C | H1 | 76.1° | 180.0° |
