LYH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| CA | C | sing | 1.51Å | 1.51Å | |
| CA | CB | sing | 1.51Å | 1.55Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.35Å | |
| CB | CG | doub | 1.31Å | 1.35Å | |
| CG | CD | sing | 1.51Å | 1.50Å | |
| CD | CE | sing | 1.53Å | 1.57Å | |
| CE | NZ | sing | 1.47Å | 1.48Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB | sing | 1.08Å | 1.08Å | |
| CG | HG | sing | 1.08Å | 1.08Å | |
| CD | HD1 | sing | 1.09Å | 1.10Å | |
| CD | HD2 | sing | 1.09Å | 1.10Å | |
| CE | HE1 | sing | 1.09Å | 1.10Å | |
| CE | HE2 | sing | 1.09Å | 1.10Å | |
| NZ | HZ1 | sing | 1.01Å | 1.00Å | |
| NZ | HZ2 | sing | 1.01Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | C | 114.1° | 109.5° |
| N | CA | CB | 112.6° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.1° |
| N | CA | HA | 102.0° | 109.5° |
| C | CA | CB | 102.4° | 109.4° |
| CA | C | O | 121.2° | 120.0° |
| CA | C | OXT | 113.2° | 120.0° |
| C | CA | HA | 112.3° | 109.4° |
| CA | CB | CG | 120.7° | 120.0° |
| CB | CA | HA | 113.9° | 109.5° |
| CA | CB | HB | 119.7° | 120.0° |
| O | C | OXT | 125.5° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
| CB | CG | CD | 127.1° | 120.0° |
| CG | CB | HB | 119.7° | 120.0° |
| CB | CG | HG | 116.5° | 120.0° |
| CG | CD | CE | 109.5° | 109.5° |
| CD | CG | HG | 116.4° | 120.0° |
| CG | CD | HD1 | 109.5° | 109.5° |
| CG | CD | HD2 | 109.5° | 109.5° |
| CD | CE | NZ | 111.8° | 109.4° |
| CE | CD | HD1 | 109.4° | 109.5° |
| CE | CD | HD2 | 109.4° | 109.5° |
| CD | CE | HE1 | 108.7° | 109.5° |
| CD | CE | HE2 | 108.7° | 109.4° |
| NZ | CE | HE1 | 108.7° | 109.5° |
| NZ | CE | HE2 | 108.7° | 109.4° |
| CE | NZ | HZ1 | 109.5° | 111.0° |
| CE | NZ | HZ2 | 109.5° | 111.0° |
| H | N | H2 | 109.5° | 111.0° |
| HD1 | CD | HD2 | 109.5° | 109.5° |
| HE1 | CE | HE2 | 110.2° | 109.5° |
| HZ1 | NZ | HZ2 | 109.5° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | C | CB | 121.9° | 120.0° |
| N | CA | C | HA | 115.5° | 120.0° |
| N | CA | CB | HA | 115.5° | 120.1° |
| N | CA | C | O | 0.4° | 20.0° |
| N | CA | C | OXT | 178.4° | 160.0° |
| N | CA | CB | CG | 75.3° | 115.0° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | HB | 104.7° | 65.0° |
| C | CA | CB | HA | 121.5° | 119.9° |
| CA | C | O | OXT | 178.6° | 179.9° |
| C | CA | CB | CG | 47.7° | 125.0° |
| C | CA | N | H | 180.0° | 64.0° |
| C | CA | N | H2 | 60.0° | 60.0° |
| C | CA | CB | HB | 132.3° | 55.0° |
| CA | C | OXT | HXT | 178.7° | 180.0° |
| CB | CA | C | O | 121.5° | 100.0° |
| CB | CA | C | OXT | 59.7° | 80.0° |
| CA | CB | CG | HB | 180.0° | 179.9° |
| CA | CB | CG | CD | 176.8° | 180.0° |
| CB | CA | N | H | 63.8° | 176.1° |
| CB | CA | N | H2 | 176.1° | 60.0° |
| CA | CB | CG | HG | 3.2° | 0.1° |
| O | C | CA | HA | 115.9° | 140.1° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| OXT | C | CA | HA | 62.9° | 40.0° |
| CB | CG | CD | HG | 180.0° | 180.0° |
| CB | CG | CD | CE | 122.4° | 125.0° |
| CG | CB | CA | HA | 169.1° | 5.1° |
| CB | CG | CD | HD1 | 2.4° | 115.1° |
| CB | CG | CD | HD2 | 117.6° | 5.0° |
| CG | CD | CE | HD1 | 120.0° | 120.0° |
| CG | CD | CE | HD2 | 120.0° | 120.0° |
| CG | CD | CE | NZ | 83.6° | 180.0° |
| CD | CG | CB | HB | 3.1° | 0.0° |
| CG | CD | HD1 | HD2 | 120.0° | 120.0° |
| CG | CD | CE | HE1 | 156.4° | 60.0° |
| CG | CD | CE | HE2 | 36.4° | 60.1° |
| CD | CE | NZ | HE1 | 120.0° | 120.0° |
| CD | CE | NZ | HE2 | 120.0° | 119.9° |
| CE | CD | CG | HG | 57.6° | 55.0° |
| CE | CD | HD1 | HD2 | 119.9° | 120.0° |
| CD | CE | HE1 | HE2 | 119.0° | 120.0° |
| CD | CE | NZ | HZ1 | 180.0° | 56.1° |
| CD | CE | NZ | HZ2 | 60.0° | 180.0° |
| NZ | CE | CD | HD1 | 36.4° | 60.0° |
| NZ | CE | CD | HD2 | 156.4° | 60.0° |
| NZ | CE | HE1 | HE2 | 119.0° | 120.0° |
| CE | NZ | HZ1 | HZ2 | 120.0° | 123.9° |
| H | N | CA | HA | 58.6° | 56.0° |
| H2 | N | CA | HA | 61.4° | 179.9° |
| HA | CA | CB | HB | 10.9° | 175.0° |
| HB | CB | CG | HG | 176.8° | 180.0° |
| HG | CG | CD | HD1 | 177.6° | 65.0° |
| HG | CG | CD | HD2 | 62.4° | 175.0° |
| HD1 | CD | CE | HE1 | 83.6° | 180.0° |
| HD1 | CD | CE | HE2 | 156.4° | 59.9° |
| HD2 | CD | CE | HE1 | 36.4° | 60.0° |
| HD2 | CD | CE | HE2 | 83.6° | 179.9° |
| HE1 | CE | NZ | HZ1 | 60.0° | 63.9° |
| HE1 | CE | NZ | HZ2 | 180.0° | 60.0° |
| HE2 | CE | NZ | HZ1 | 60.0° | 176.0° |
| HE2 | CE | NZ | HZ2 | 60.0° | 60.1° |
