LYF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CA	C	sing	1.51Å	1.51Å
C	O	doub	1.21Å	1.24Å
C	OXT	sing	1.34Å	1.33Å
CA	N	sing	1.47Å	1.46Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
CB	CA	sing	1.53Å	1.53Å
CA	HA	sing	1.09Å	1.10Å
CG	CB	sing	1.53Å	1.52Å
CB	HB	sing	1.09Å	1.10Å
CB	HBA	sing	1.09Å	1.10Å
CE	CD	sing	1.53Å	1.52Å
CD	CG	sing	1.53Å	1.53Å
CD	HD	sing	1.09Å	1.10Å
CD	HDA	sing	1.09Å	1.10Å
NZ	CE	sing	1.46Å	1.46Å
CE	HE	sing	1.09Å	1.10Å
CE	HEA	sing	1.09Å	1.10Å
CG	HG	sing	1.09Å	1.10Å
CG	HGA	sing	1.09Å	1.10Å
C41	NZ	doub	1.28Å	1.27Å
C11	C12	sing	1.53Å	1.51Å
C11	C41	sing	1.51Å	1.51Å
C11	H11	sing	1.09Å	1.10Å
C11	H11A	sing	1.09Å	1.10Å
O17	C12	sing	1.43Å	1.44Å
C13	C12	sing	1.53Å	1.53Å
C12	H12	sing	1.09Å	1.10Å
C18	C13	sing	1.53Å	1.52Å
C13	H13	sing	1.09Å	1.10Å
C13	H13A	sing	1.09Å	1.10Å
O16	C14	doub	1.21Å	1.26Å
C14	O15	sing	1.35Å	1.25Å
C14	C41	sing	1.48Å	1.46Å
O15	HO15	sing	0.97Å	0.95Å
O17	HO17	sing	0.97Å	0.95Å
C18	C20	sing	1.51Å	1.52Å
C18	H18	sing	1.09Å	1.10Å
C18	H18A	sing	1.09Å	1.10Å
O22	C20	doub	1.21Å	1.25Å
C20	O21	sing	1.34Å	1.25Å
O21	HO21	sing	0.97Å	0.95Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	C	O	120.7°	120.0°
CA	C	OXT	116.1°	120.0°
C	CA	N	106.1°	109.4°
C	CA	CB	112.6°	109.5°
C	CA	HA	110.2°	109.4°
O	C	OXT	123.2°	120.0°
C	OXT	HXT	109.5°	117.0°
CA	N	H	109.5°	111.0°
CA	N	H2	109.4°	111.0°
N	CA	CB	111.0°	109.5°
N	CA	HA	111.8°	109.5°
H	N	H2	109.5°	111.1°
CB	CA	HA	105.2°	109.5°
CA	CB	CG	113.9°	109.4°
CA	CB	HB	108.0°	109.4°
CA	CB	HBA	108.0°	109.4°
CG	CB	HB	108.0°	109.5°
CG	CB	HBA	108.0°	109.5°
CB	CG	CD	111.4°	109.4°
CB	CG	HG	108.9°	109.4°
CB	CG	HGA	108.8°	109.5°
HB	CB	HBA	110.9°	109.5°
CE	CD	CG	111.1°	109.5°
CE	CD	HD	108.9°	109.5°
CE	CD	HDA	108.9°	109.5°
CD	CE	NZ	107.3°	109.5°
CD	CE	HE	110.2°	109.4°
CD	CE	HEA	110.2°	109.5°
CG	CD	HD	108.9°	109.4°
CG	CD	HDA	108.9°	109.4°
CD	CG	HG	108.8°	109.5°
CD	CG	HGA	108.9°	109.5°
HD	CD	HDA	110.0°	109.5°
NZ	CE	HE	110.2°	109.5°
NZ	CE	HEA	110.2°	109.5°
CE	NZ	C41	129.4°	120.0°
HE	CE	HEA	108.7°	109.4°
HG	CG	HGA	110.1°	109.5°
NZ	C41	C11	120.5°	120.0°
NZ	C41	C14	120.8°	120.0°
C12	C11	C41	115.6°	109.5°
C12	C11	H11	107.5°	109.5°
C12	C11	H11A	107.5°	109.5°
C11	C12	O17	102.9°	109.5°
C11	C12	C13	111.9°	109.4°
C11	C12	H12	112.8°	109.4°
C41	C11	H11	107.5°	109.4°
C41	C11	H11A	107.5°	109.5°
C11	C41	C14	118.6°	120.0°
H11	C11	H11A	111.4°	109.5°
O17	C12	C13	111.1°	109.5°
O17	C12	H12	113.5°	109.5°
C12	O17	HO17	109.5°	114.0°
C13	C12	H12	104.8°	109.5°
C12	C13	C18	111.9°	109.4°
C12	C13	H13	108.6°	109.5°
C12	C13	H13A	108.7°	109.5°
C18	C13	H13	108.7°	109.4°
C18	C13	H13A	108.7°	109.5°
C13	C18	C20	111.7°	109.4°
C13	C18	H18	108.7°	109.5°
C13	C18	H18A	108.8°	109.5°
H13	C13	H13A	110.3°	109.5°
O16	C14	O15	121.8°	119.9°
O16	C14	C41	119.6°	120.0°
O15	C14	C41	118.6°	120.0°
C14	O15	HO15	109.5°	117.1°
C20	C18	H18	108.7°	109.4°
C20	C18	H18A	108.7°	109.4°
C18	C20	O22	118.7°	120.0°
C18	C20	O21	118.2°	120.0°
H18	C18	H18A	110.2°	109.5°
O22	C20	O21	123.1°	120.0°
C20	O21	HO21	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	C	O	OXT	178.9°	179.6°
C	CA	N	CB	122.6°	120.0°
C	CA	N	HA	120.2°	119.9°
C	CA	N	H	180.0°	64.0°
C	CA	N	H2	60.0°	60.1°
C	CA	CB	HA	120.1°	120.0°
C	CA	CB	CG	52.8°	175.0°
C	CA	CB	HB	172.8°	65.0°
C	CA	CB	HBA	67.2°	55.0°
CA	C	OXT	HXT	179.0°	179.7°
O	C	CA	N	70.1°	20.0°
O	C	CA	CB	51.6°	100.0°
O	C	CA	HA	168.7°	140.0°
O	C	OXT	HXT	0.0°	0.1°
OXT	C	CA	N	108.9°	160.3°
OXT	C	CA	CB	129.4°	79.7°
OXT	C	CA	HA	12.3°	40.3°
CA	N	H	H2	120.0°	124.0°
N	CA	CB	HA	121.1°	120.0°
N	CA	CB	CG	171.6°	65.0°
N	CA	CB	HB	68.4°	55.0°
N	CA	CB	HBA	51.6°	175.0°
H	N	CA	CB	57.4°	176.0°
H	N	CA	HA	59.8°	56.0°
H2	N	CA	CB	177.4°	60.0°
H2	N	CA	HA	60.2°	180.0°
CA	CB	CG	HB	120.0°	120.0°
CA	CB	CG	HBA	120.0°	120.0°
CA	CB	HB	HBA	118.2°	119.9°
CA	CB	CG	CD	177.6°	180.0°
CA	CB	CG	HG	57.6°	60.0°
CA	CB	CG	HGA	62.4°	60.0°
HA	CA	CB	CG	67.3°	55.0°
HA	CA	CB	HB	52.7°	175.0°
HA	CA	CB	HBA	172.7°	65.0°
CG	CB	HB	HBA	118.2°	120.1°
CB	CG	CD	CE	174.4°	180.0°
CB	CG	CD	HG	120.0°	119.9°
CB	CG	CD	HGA	120.0°	120.0°
CB	CG	CD	HD	65.6°	60.0°
CB	CG	CD	HDA	54.4°	60.0°
CB	CG	HG	HGA	119.2°	120.0°
HB	CB	CG	CD	62.4°	60.1°
HB	CB	CG	HG	177.6°	180.0°
HB	CB	CG	HGA	57.6°	60.0°
HBA	CB	CG	CD	57.6°	60.0°
HBA	CB	CG	HG	62.4°	59.9°
HBA	CB	CG	HGA	177.6°	179.9°
CE	CD	CG	HD	120.0°	120.0°
CE	CD	CG	HDA	120.0°	120.0°
CE	CD	HD	HDA	119.3°	120.0°
CD	CE	NZ	HE	120.0°	120.0°
CD	CE	NZ	HEA	120.0°	120.0°
CD	CE	HE	HEA	120.9°	119.9°
CE	CD	CG	HG	65.6°	60.1°
CE	CD	CG	HGA	54.4°	60.0°
CD	CE	NZ	C41	162.3°	175.2°
CG	CD	HD	HDA	119.3°	120.0°
CG	CD	CE	NZ	167.3°	180.0°
CG	CD	CE	HE	47.3°	60.0°
CG	CD	CE	HEA	72.7°	59.9°
CD	CG	HG	HGA	119.2°	120.0°
HD	CD	CE	NZ	47.3°	60.0°
HD	CD	CE	HE	72.7°	60.0°
HD	CD	CE	HEA	167.3°	179.9°
HD	CD	CG	HG	54.4°	59.9°
HD	CD	CG	HGA	174.4°	180.0°
HDA	CD	CE	NZ	72.7°	60.0°
HDA	CD	CE	HE	167.4°	179.9°
HDA	CD	CE	HEA	47.4°	60.0°
HDA	CD	CG	HG	174.4°	180.0°
HDA	CD	CG	HGA	65.6°	60.0°
NZ	CE	HE	HEA	120.9°	120.1°
CE	NZ	C41	C11	3.9°	5.6°
CE	NZ	C41	C14	179.7°	174.4°
HE	CE	NZ	C41	77.7°	55.2°
HEA	CE	NZ	C41	42.3°	64.8°
NZ	C41	C11	C12	84.9°	84.8°
NZ	C41	C11	C14	176.4°	180.0°
NZ	C41	C11	H11	155.1°	35.1°
NZ	C41	C11	H11A	35.1°	155.1°
NZ	C41	C14	O16	170.9°	180.0°
NZ	C41	C14	O15	9.9°	0.0°
C12	C11	C41	H11	120.0°	120.0°
C12	C11	C41	H11A	120.0°	120.0°
C12	C11	H11	H11A	117.5°	120.0°
C11	C12	O17	C13	119.9°	120.0°
C11	C12	O17	H12	122.2°	120.0°
C11	C12	C13	H12	122.6°	120.0°
C11	C12	C13	C18	165.4°	175.0°
C11	C12	C13	H13	45.4°	65.0°
C11	C12	C13	H13A	74.6°	55.0°
C12	C11	C41	C14	98.7°	95.2°
C11	C12	O17	HO17	180.0°	60.0°
C41	C11	H11	H11A	117.5°	120.0°
C41	C11	C12	O17	179.4°	65.0°
C41	C11	C12	C13	61.3°	175.0°
C41	C11	C12	H12	56.6°	55.0°
C11	C41	C14	O16	12.7°	0.0°
C11	C41	C14	O15	166.6°	180.0°
H11	C11	C12	O17	60.6°	175.0°
H11	C11	C12	C13	58.7°	55.0°
H11	C11	C12	H12	176.6°	65.0°
H11	C11	C41	C14	21.3°	144.9°
H11A	C11	C12	O17	59.4°	55.0°
H11A	C11	C12	C13	178.7°	65.0°
H11A	C11	C12	H12	63.4°	175.0°
H11A	C11	C41	C14	141.3°	24.9°
O17	C12	C13	H12	123.0°	120.0°
O17	C12	C13	C18	51.0°	65.0°
O17	C12	C13	H13	69.0°	55.0°
O17	C12	C13	H13A	171.0°	175.0°
C12	C13	C18	H13	120.0°	120.0°
C12	C13	C18	H13A	120.0°	120.0°
C12	C13	H13	H13A	119.0°	120.1°
C13	C12	O17	HO17	60.1°	60.0°
C12	C13	C18	C20	151.7°	180.0°
C12	C13	C18	H18	31.7°	60.1°
C12	C13	C18	H18A	88.3°	60.0°
H12	C12	C13	C18	72.0°	55.0°
H12	C12	C13	H13	168.0°	175.0°
H12	C12	C13	H13A	48.0°	64.9°
H12	C12	O17	HO17	57.8°	180.0°
C18	C13	H13	H13A	119.0°	120.0°
C13	C18	C20	H18	120.0°	120.0°
C13	C18	C20	H18A	120.0°	120.0°
C13	C18	H18	H18A	119.1°	120.1°
C13	C18	C20	O22	102.0°	0.0°
C13	C18	C20	O21	78.6°	180.0°
H13	C13	C18	C20	88.3°	60.0°
H13	C13	C18	H18	151.7°	180.0°
H13	C13	C18	H18A	31.7°	60.0°
H13A	C13	C18	C20	31.7°	60.0°
H13A	C13	C18	H18	88.3°	59.9°
H13A	C13	C18	H18A	151.7°	180.0°
O16	C14	O15	C41	179.2°	180.0°
O16	C14	O15	HO15	0.0°	0.0°
C41	C14	O15	HO15	179.2°	180.0°
C20	C18	H18	H18A	119.0°	120.0°
C18	C20	O22	O21	179.4°	180.0°
C18	C20	O21	HO21	179.4°	180.0°
H18	C18	C20	O22	138.0°	120.0°
H18	C18	C20	O21	41.4°	60.0°
H18A	C18	C20	O22	18.1°	120.0°
H18A	C18	C20	O21	161.4°	60.0°
O22	C20	O21	HO21	0.0°	0.1°

Definition date:	2011-10-25
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB
Derived from:	3UBS