LXE
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1' | C6' | sing | 1.47Å | 1.49Å | |
C4' | C6' | sing | 1.55Å | 1.58Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | C3' | sing | 1.54Å | 1.51Å | |
O3' | C3' | sing | 1.43Å | 1.49Å | |
C6' | C1' | sing | 1.55Å | 1.51Å | |
C5' | O5' | sing | 1.43Å | 1.41Å | |
C2' | C3' | sing | 1.54Å | 1.47Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C2' | O2' | sing | 1.43Å | 1.38Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C1' | H1 | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HB | sing | 0.97Å | 0.95Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HC | sing | 0.97Å | 0.95Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
N1' | HN1' | sing | 1.01Å | 1.00Å | |
N1' | HN11 | sing | 1.01Å | 1.00Å | |
N1' | HN12 | sing | 1.01Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N1' | C6' | C4' | 105.6° | 110.7° |
N1' | C6' | C1' | 112.5° | 110.8° |
N1' | C6' | H6' | 111.7° | 110.8° |
C6' | N1' | HN1' | 109.5° | 109.5° |
C6' | N1' | HN11 | 109.5° | 109.5° |
C6' | N1' | HN12 | 109.5° | 109.5° |
C6' | C4' | C5' | 112.8° | 110.5° |
C6' | C4' | C3' | 102.9° | 104.2° |
C4' | C6' | C1' | 104.7° | 102.6° |
C6' | C4' | H4' | 108.7° | 110.5° |
C4' | C6' | H6' | 110.5° | 110.8° |
C5' | C4' | C3' | 113.0° | 110.5° |
C4' | C5' | O5' | 114.6° | 109.5° |
C5' | C4' | H4' | 109.5° | 110.4° |
C4' | C5' | H5'1 | 108.2° | 109.5° |
C4' | C5' | H5'2 | 108.2° | 109.5° |
C4' | C3' | O3' | 110.7° | 110.1° |
C4' | C3' | C2' | 101.1° | 106.6° |
C4' | C3' | H3' | 111.5° | 110.1° |
C3' | C4' | H4' | 109.6° | 110.6° |
O3' | C3' | C2' | 108.9° | 110.0° |
O3' | C3' | H3' | 111.9° | 110.0° |
C3' | O3' | HC | 109.5° | 114.0° |
C6' | C1' | C2' | 100.3° | 104.3° |
C6' | C1' | H1' | 111.7° | 110.5° |
C6' | C1' | H1 | 111.7° | 110.5° |
C1' | C6' | H6' | 111.5° | 110.8° |
O5' | C5' | H5'1 | 108.2° | 109.4° |
O5' | C5' | H5'2 | 108.2° | 109.4° |
C5' | O5' | H5' | 109.5° | 114.0° |
C3' | C2' | C1' | 100.5° | 106.6° |
C3' | C2' | O2' | 113.7° | 110.0° |
C3' | C2' | H2' | 110.0° | 110.1° |
C2' | C3' | H3' | 112.2° | 110.0° |
C1' | C2' | O2' | 111.8° | 110.0° |
C2' | C1' | H1' | 111.7° | 110.5° |
C2' | C1' | H1 | 111.7° | 110.5° |
C1' | C2' | H2' | 109.1° | 110.0° |
O2' | C2' | H2' | 111.2° | 110.1° |
C2' | O2' | HB | 109.5° | 114.0° |
H1' | C1' | H1 | 109.5° | 110.4° |
H5'1 | C5' | H5'2 | 109.5° | 109.5° |
HN1' | N1' | HN11 | 109.5° | 109.5° |
HN1' | N1' | HN12 | 109.5° | 109.5° |
HN11 | N1' | HN12 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N1' | C6' | C4' | C1' | 118.9° | 118.3° |
N1' | C6' | C4' | H6' | 121.0° | 123.4° |
N1' | C6' | C4' | C5' | 115.3° | 85.1° |
N1' | C6' | C4' | C3' | 122.6° | 156.2° |
N1' | C6' | C1' | H6' | 126.4° | 123.5° |
N1' | C6' | C1' | C2' | 86.5° | 156.2° |
N1' | C6' | C1' | H1' | 155.0° | 37.4° |
N1' | C6' | C1' | H1 | 32.0° | 85.1° |
N1' | C6' | C4' | H4' | 6.4° | 37.4° |
C6' | N1' | HN1' | HN11 | 120.0° | 120.0° |
C6' | N1' | HN1' | HN12 | 120.0° | 120.0° |
C6' | N1' | HN11 | HN12 | 120.0° | 120.0° |
C6' | C4' | C5' | C3' | 116.3° | 114.8° |
C6' | C4' | C5' | H4' | 121.2° | 122.6° |
C6' | C4' | C3' | H4' | 115.6° | 118.8° |
C6' | C4' | C3' | O3' | 150.5° | 142.9° |
C4' | C6' | C1' | H6' | 119.5° | 118.3° |
C6' | C4' | C5' | O5' | 63.4° | 175.0° |
C6' | C4' | C3' | C2' | 35.2° | 23.7° |
C4' | C6' | C1' | C2' | 27.6° | 37.9° |
C4' | C6' | C1' | H1' | 90.8° | 80.8° |
C4' | C6' | C1' | H1 | 146.1° | 156.7° |
C6' | C4' | C3' | H3' | 84.3° | 95.6° |
C6' | C4' | C5' | H5'1 | 175.8° | 55.0° |
C6' | C4' | C5' | H5'2 | 57.3° | 65.0° |
C4' | C6' | N1' | HN1' | 180.0° | 60.0° |
C4' | C6' | N1' | HN11 | 60.0° | 180.0° |
C4' | C6' | N1' | HN12 | 60.0° | 60.0° |
C5' | C4' | C3' | H4' | 122.5° | 122.6° |
C5' | C4' | C3' | O3' | 87.6° | 98.4° |
C5' | C4' | C6' | C1' | 125.8° | 156.6° |
C4' | C5' | O5' | H5'1 | 120.8° | 120.0° |
C4' | C5' | O5' | H5'2 | 120.7° | 120.0° |
C5' | C4' | C3' | C2' | 157.2° | 142.3° |
C5' | C4' | C3' | H3' | 37.7° | 23.0° |
C4' | C5' | H5'1 | H5'2 | 117.7° | 120.1° |
C4' | C5' | O5' | H5' | 180.0° | 180.0° |
C5' | C4' | C6' | H6' | 5.7° | 38.3° |
C4' | C3' | O3' | C2' | 110.3° | 117.2° |
C4' | C3' | O3' | H3' | 125.1° | 121.5° |
C3' | C4' | C6' | C1' | 3.7° | 38.0° |
C3' | C4' | C5' | O5' | 52.8° | 70.2° |
C4' | C3' | C2' | H3' | 119.0° | 119.3° |
C4' | C3' | C2' | C1' | 53.9° | 0.0° |
C4' | C3' | C2' | O2' | 173.5° | 119.3° |
C4' | C3' | C2' | H2' | 61.0° | 119.2° |
C4' | C3' | O3' | HC | 180.0° | 178.6° |
C3' | C4' | C5' | H5'1 | 67.9° | 169.8° |
C3' | C4' | C5' | H5'2 | 173.5° | 49.8° |
C3' | C4' | C6' | H6' | 116.4° | 80.4° |
O3' | C3' | C2' | H3' | 124.5° | 121.4° |
O3' | C3' | C2' | C1' | 170.5° | 119.4° |
O3' | C3' | C2' | O2' | 69.9° | 121.4° |
O3' | C3' | C2' | H2' | 55.6° | 0.1° |
O3' | C3' | C4' | H4' | 34.9° | 24.2° |
C6' | C1' | C2' | C3' | 50.9° | 23.7° |
C6' | C1' | C2' | H1' | 118.5° | 118.7° |
C6' | C1' | C2' | H1 | 118.5° | 118.7° |
C6' | C1' | C2' | O2' | 171.9° | 95.6° |
C6' | C1' | H1' | H1 | 124.3° | 122.5° |
C6' | C1' | C2' | H2' | 64.6° | 143.0° |
C1' | C6' | C4' | H4' | 112.5° | 80.9° |
C1' | C6' | N1' | HN1' | 66.4° | 53.2° |
C1' | C6' | N1' | HN11 | 173.6° | 66.9° |
C1' | C6' | N1' | HN12 | 53.6° | 173.2° |
O5' | C5' | C4' | H4' | 175.3° | 52.5° |
O5' | C5' | H5'1 | H5'2 | 117.6° | 119.9° |
C3' | C2' | C1' | O2' | 121.0° | 119.2° |
C3' | C2' | C1' | H2' | 115.6° | 119.3° |
C3' | C2' | O2' | H2' | 124.8° | 121.4° |
C3' | C2' | C1' | H1' | 67.6° | 95.1° |
C3' | C2' | C1' | H1 | 169.4° | 142.4° |
C3' | C2' | O2' | HB | 180.0° | 179.9° |
C2' | C3' | O3' | HC | 69.7° | 61.4° |
C2' | C3' | C4' | H4' | 80.3° | 95.1° |
C1' | C2' | O2' | H2' | 122.2° | 121.4° |
C2' | C1' | H1' | H1 | 124.2° | 122.6° |
C1' | C2' | O2' | HB | 67.0° | 62.8° |
C1' | C2' | C3' | H3' | 65.1° | 119.3° |
C2' | C1' | C6' | H6' | 147.1° | 80.3° |
O2' | C2' | C1' | H1' | 53.4° | 145.7° |
O2' | C2' | C1' | H1 | 69.6° | 23.1° |
O2' | C2' | C3' | H3' | 54.5° | 0.0° |
H1' | C1' | C2' | H2' | 176.9° | 24.2° |
H1' | C1' | C6' | H6' | 28.6° | 160.9° |
H1 | C1' | C2' | H2' | 53.9° | 98.3° |
H1 | C1' | C6' | H6' | 94.4° | 38.4° |
H2' | C2' | O2' | HB | 55.2° | 58.6° |
H2' | C2' | C3' | H3' | 180.0° | 121.5° |
H3' | C3' | O3' | HC | 54.9° | 60.0° |
H3' | C3' | C4' | H4' | 160.2° | 145.6° |
H4' | C4' | C5' | H5'1 | 54.6° | 67.5° |
H4' | C4' | C5' | H5'2 | 64.0° | 172.4° |
H4' | C4' | C6' | H6' | 127.4° | 160.8° |
H5'1 | C5' | O5' | H5' | 59.3° | 60.0° |
H5'2 | C5' | O5' | H5' | 59.2° | 60.0° |
H6' | C6' | N1' | HN1' | 59.8° | 176.6° |
H6' | C6' | N1' | HN11 | 60.2° | 56.6° |
H6' | C6' | N1' | HN12 | 179.8° | 63.3° |
HN1' | N1' | HN11 | HN12 | 120.0° | 120.0° |