LWM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P1 | O5' | sing | 1.61Å | 1.61Å | |
| P1 | OP1 | doub | 1.48Å | 1.47Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C1 | N1 | sing | 1.36Å | 1.37Å | |
| C1 | N2 | sing | 1.37Å | 1.33Å | |
| N2 | H3' | sing | 0.97Å | 1.00Å | |
| N3 | C1 | doub | 1.32Å | 1.32Å | |
| C2 | N3 | sing | 1.34Å | 1.35Å | |
| C3 | C2 | doub | 1.39Å | 1.39Å | |
| C3 | C4 | sing | 1.40Å | 1.43Å | |
| C4 | N1 | sing | 1.35Å | 1.38Å | |
| C4 | O1 | doub | 1.22Å | 1.23Å | |
| N4 | C3 | sing | 1.41Å | 1.33Å | |
| C5 | N4 | sing | 1.35Å | 1.33Å | |
| C5 | O2 | doub | 1.21Å | 1.23Å | |
| N5 | C2 | sing | 1.38Å | 1.33Å | |
| C1' | N5 | sing | 1.46Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| OP3 | P1 | sing | 1.61Å | 1.48Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| OP2 | P1 | sing | 1.61Å | 1.48Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| C3' | C2' | sing | 1.54Å | 1.53Å | |
| C3' | C4' | sing | 1.55Å | 1.54Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C4' | C6' | sing | 1.55Å | 1.53Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C6' | C1' | sing | 1.54Å | 1.52Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| HN7 | N4 | sing | 0.97Å | 1.00Å | |
| HN9 | C5 | sing | 1.08Å | 1.08Å | |
| H5 | N5 | sing | 0.97Å | 1.00Å | |
| H5' | C5' | sing | 1.09Å | 1.10Å | |
| H2'' | C2' | sing | 1.09Å | 1.10Å | |
| HN2A | N2 | sing | 0.97Å | 1.00Å | |
| H3 | C3' | sing | 1.09Å | 1.10Å | |
| H6'' | C6' | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P1 | OP1 | 175.5° | 109.5° |
| O5' | P1 | OP3 | 108.8° | 109.5° |
| O5' | P1 | OP2 | 107.8° | 109.4° |
| P1 | O5' | C5' | 123.9° | 123.0° |
| OP1 | P1 | OP3 | 74.2° | 109.5° |
| OP1 | P1 | OP2 | 72.8° | 109.5° |
| HN1 | N1 | C1 | 117.6° | 119.9° |
| HN1 | N1 | C4 | 117.7° | 119.9° |
| N1 | C1 | N2 | 118.5° | 119.3° |
| N1 | C1 | N3 | 123.0° | 121.5° |
| C1 | N1 | C4 | 124.7° | 120.2° |
| C1 | N2 | H3' | 120.0° | 120.0° |
| N2 | C1 | N3 | 118.5° | 119.3° |
| C1 | N2 | HN2A | 120.0° | 120.0° |
| H3' | N2 | HN2A | 120.1° | 119.9° |
| C1 | N3 | C2 | 114.3° | 121.2° |
| N3 | C2 | C3 | 126.9° | 119.7° |
| N3 | C2 | N5 | 112.6° | 120.2° |
| C2 | C3 | C4 | 117.8° | 118.6° |
| C2 | C3 | N4 | 115.4° | 120.8° |
| C3 | C2 | N5 | 120.5° | 120.1° |
| C3 | C4 | N1 | 113.3° | 118.8° |
| C3 | C4 | O1 | 128.7° | 120.6° |
| C4 | C3 | N4 | 126.7° | 120.6° |
| N1 | C4 | O1 | 118.0° | 120.6° |
| C3 | N4 | C5 | 123.2° | 120.0° |
| C3 | N4 | HN7 | 118.4° | 120.0° |
| N4 | C5 | O2 | 122.2° | 120.0° |
| C5 | N4 | HN7 | 118.4° | 120.0° |
| N4 | C5 | HN9 | 118.9° | 120.0° |
| O2 | C5 | HN9 | 118.9° | 120.0° |
| C2 | N5 | C1' | 122.4° | 120.0° |
| C2 | N5 | H5 | 106.2° | 120.0° |
| N5 | C1' | H1' | 109.5° | 110.0° |
| N5 | C1' | C2' | 113.0° | 110.1° |
| N5 | C1' | C6' | 110.8° | 110.0° |
| C1' | N5 | H5 | 106.2° | 120.0° |
| H1' | C1' | C2' | 108.9° | 110.0° |
| H1' | C1' | C6' | 109.1° | 110.0° |
| P1 | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P1 | OP2 | 119.9° | 109.5° |
| C1' | C2' | H2' | 109.8° | 110.0° |
| C1' | C2' | C3' | 108.3° | 106.6° |
| C2' | C1' | C6' | 105.5° | 106.6° |
| C1' | C2' | H2'' | 109.8° | 110.0° |
| H2' | C2' | C3' | 109.7° | 110.1° |
| H2' | C2' | H2'' | 109.5° | 110.0° |
| P1 | OP2 | HOP2 | 109.5° | 114.0° |
| C2' | C3' | C4' | 105.8° | 104.2° |
| C2' | C3' | O3' | 116.5° | 110.4° |
| C3' | C2' | H2'' | 109.8° | 110.1° |
| C2' | C3' | H3 | 107.6° | 110.5° |
| C4' | C3' | O3' | 110.2° | 110.5° |
| C3' | C4' | H4' | 108.9° | 110.7° |
| C3' | C4' | C6' | 107.1° | 102.8° |
| C3' | C4' | C5' | 112.4° | 110.7° |
| C4' | C3' | H3 | 107.5° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| O3' | C3' | H3 | 108.8° | 110.6° |
| H4' | C4' | C6' | 109.1° | 110.7° |
| H4' | C4' | C5' | 109.1° | 110.7° |
| C6' | C4' | C5' | 110.2° | 111.0° |
| C4' | C6' | C1' | 109.1° | 104.2° |
| C4' | C6' | H6' | 109.6° | 110.5° |
| C4' | C6' | H6'' | 109.6° | 110.5° |
| C4' | C5' | H5'' | 109.4° | 109.5° |
| C4' | C5' | O5' | 109.6° | 109.5° |
| C4' | C5' | H5' | 109.4° | 109.5° |
| H5'' | C5' | O5' | 109.4° | 109.5° |
| H5'' | C5' | H5' | 109.4° | 109.5° |
| O5' | C5' | H5' | 109.5° | 109.5° |
| C1' | C6' | H6' | 109.5° | 110.4° |
| C1' | C6' | H6'' | 109.6° | 110.6° |
| H6' | C6' | H6'' | 109.5° | 110.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P1 | OP1 | OP3 | 132.7° | 120.0° |
| O5' | P1 | OP1 | OP2 | 98.3° | 120.0° |
| O5' | P1 | OP3 | OP2 | 124.6° | 120.0° |
| O5' | P1 | OP3 | HOP3 | 176.5° | 60.0° |
| O5' | P1 | OP2 | HOP2 | 175.4° | 180.0° |
| P1 | O5' | C5' | C4' | 133.9° | 180.0° |
| P1 | O5' | C5' | H5'' | 106.1° | 60.0° |
| P1 | O5' | C5' | H5' | 13.9° | 60.0° |
| OP1 | P1 | OP3 | OP2 | 58.9° | 120.0° |
| OP1 | P1 | OP3 | HOP3 | 0.0° | 180.0° |
| OP1 | P1 | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P1 | O5' | C5' | 111.9° | 55.0° |
| HN1 | N1 | C1 | C4 | 180.0° | 179.7° |
| HN1 | N1 | C1 | N2 | 0.1° | 0.0° |
| HN1 | N1 | C1 | N3 | 179.9° | 180.0° |
| HN1 | N1 | C4 | C3 | 179.9° | 179.8° |
| HN1 | N1 | C4 | O1 | 0.1° | 0.3° |
| N1 | C1 | N2 | N3 | 179.8° | 179.9° |
| N1 | C1 | N2 | H3' | 179.8° | 0.0° |
| N1 | C1 | N3 | C2 | 0.0° | 0.1° |
| C1 | N1 | C4 | C3 | 0.1° | 0.5° |
| C1 | N1 | C4 | O1 | 179.9° | 180.0° |
| N1 | C1 | N2 | HN2A | 0.2° | 180.0° |
| C1 | N2 | H3' | HN2A | 180.0° | 180.0° |
| N2 | C1 | N3 | C2 | 179.8° | 180.0° |
| N2 | C1 | N1 | C4 | 179.8° | 179.7° |
| H3' | N2 | C1 | N3 | 0.0° | 179.9° |
| C1 | N3 | C2 | C3 | 0.0° | 0.1° |
| N3 | C1 | N1 | C4 | 0.1° | 0.2° |
| C1 | N3 | C2 | N5 | 179.9° | 180.0° |
| N3 | C1 | N2 | HN2A | 180.0° | 0.1° |
| N3 | C2 | C3 | N5 | 179.9° | 180.0° |
| N3 | C2 | C3 | C4 | 0.0° | 0.2° |
| N3 | C2 | C3 | N4 | 179.9° | 180.0° |
| N3 | C2 | N5 | C1' | 0.1° | 0.0° |
| N3 | C2 | N5 | H5 | 121.7° | 180.0° |
| C2 | C3 | C4 | N4 | 179.9° | 179.8° |
| C2 | C3 | C4 | N1 | 0.1° | 0.5° |
| C2 | C3 | C4 | O1 | 179.9° | 180.0° |
| C2 | C3 | N4 | C5 | 118.5° | 121.4° |
| C3 | C2 | N5 | C1' | 180.0° | 180.0° |
| C2 | C3 | N4 | HN7 | 61.5° | 58.5° |
| C3 | C2 | N5 | H5 | 58.2° | 0.0° |
| C3 | C4 | N1 | O1 | 180.0° | 179.5° |
| C4 | C3 | N4 | C5 | 61.6° | 58.8° |
| C4 | C3 | C2 | N5 | 180.0° | 179.8° |
| C4 | C3 | N4 | HN7 | 118.4° | 121.3° |
| N1 | C4 | C3 | N4 | 179.9° | 179.7° |
| O1 | C4 | C3 | N4 | 0.0° | 0.2° |
| C3 | N4 | C5 | HN7 | 180.0° | 179.9° |
| C3 | N4 | C5 | O2 | 0.1° | 4.7° |
| N4 | C3 | C2 | N5 | 0.1° | 0.0° |
| C3 | N4 | C5 | HN9 | 179.9° | 175.2° |
| N4 | C5 | O2 | HN9 | 180.0° | 180.0° |
| O2 | C5 | N4 | HN7 | 179.8° | 175.2° |
| C2 | N5 | C1' | H5 | 121.8° | 180.0° |
| C2 | N5 | C1' | H1' | 10.4° | 34.3° |
| C2 | N5 | C1' | C2' | 132.0° | 87.1° |
| C2 | N5 | C1' | C6' | 109.9° | 155.6° |
| N5 | C1' | H1' | C2' | 124.0° | 121.4° |
| N5 | C1' | H1' | C6' | 121.4° | 121.4° |
| N5 | C1' | C2' | C6' | 121.2° | 119.4° |
| N5 | C1' | C2' | H2' | 98.1° | 121.4° |
| N5 | C1' | C2' | C3' | 142.1° | 119.3° |
| N5 | C1' | C6' | C4' | 136.9° | 142.9° |
| N5 | C1' | C6' | H6' | 103.2° | 24.3° |
| N5 | C1' | C2' | H2'' | 22.3° | 0.0° |
| N5 | C1' | C6' | H6'' | 16.9° | 98.5° |
| H1' | C1' | C2' | C6' | 116.9° | 119.2° |
| H1' | C1' | C2' | H2' | 23.8° | 0.0° |
| H1' | C1' | C2' | C3' | 96.0° | 119.3° |
| H1' | C1' | C6' | C4' | 102.6° | 95.8° |
| H1' | C1' | C6' | H6' | 17.4° | 145.6° |
| H1' | C1' | N5 | H5 | 111.4° | 145.7° |
| H1' | C1' | C2' | H2'' | 144.1° | 121.4° |
| H1' | C1' | C6' | H6'' | 137.4° | 22.9° |
| OP3 | P1 | OP2 | HOP2 | 59.6° | 60.1° |
| OP3 | P1 | O5' | C5' | 19.8° | 65.0° |
| HOP3 | OP3 | P1 | OP2 | 58.9° | 60.0° |
| C1' | C2' | H2' | C3' | 118.9° | 117.2° |
| C1' | C2' | H2' | H2'' | 120.5° | 121.3° |
| C1' | C2' | C3' | H2'' | 119.8° | 119.3° |
| C1' | C2' | C3' | C4' | 19.5° | 23.6° |
| C1' | C2' | C3' | O3' | 103.4° | 142.3° |
| C2' | C1' | C6' | C4' | 14.3° | 23.5° |
| C2' | C1' | C6' | H6' | 134.2° | 95.1° |
| C2' | C1' | N5 | H5 | 10.2° | 92.9° |
| C1' | C2' | C3' | H3 | 134.2° | 95.1° |
| C2' | C1' | C6' | H6'' | 105.7° | 142.2° |
| H2' | C2' | C3' | H2'' | 120.3° | 121.5° |
| H2' | C2' | C3' | C4' | 139.3° | 95.7° |
| H2' | C2' | C3' | O3' | 16.5° | 23.0° |
| H2' | C2' | C1' | C6' | 140.7° | 119.3° |
| H2' | C2' | C3' | H3 | 106.0° | 145.7° |
| OP2 | P1 | O5' | C5' | 151.2° | 175.0° |
| C2' | C3' | C4' | O3' | 126.8° | 118.6° |
| C2' | C3' | C4' | H3 | 114.8° | 118.6° |
| C2' | C3' | O3' | H3 | 121.8° | 122.6° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | H4' | 128.1° | 80.4° |
| C2' | C3' | C4' | C6' | 10.3° | 37.9° |
| C2' | C3' | C4' | C5' | 110.9° | 156.5° |
| C3' | C2' | C1' | C6' | 20.9° | 0.1° |
| C4' | C3' | O3' | H3 | 117.6° | 122.7° |
| C4' | C3' | O3' | HO3' | 59.4° | 176.3° |
| C3' | C4' | H4' | C6' | 116.5° | 113.3° |
| C3' | C4' | H4' | C5' | 123.0° | 123.2° |
| C3' | C4' | C6' | C5' | 122.6° | 118.4° |
| C3' | C4' | C5' | H5'' | 175.4° | 173.6° |
| C3' | C4' | C5' | O5' | 55.3° | 66.4° |
| C3' | C4' | C6' | C1' | 2.5° | 37.8° |
| C3' | C4' | C6' | H6' | 122.4° | 80.7° |
| C3' | C4' | C5' | H5' | 64.7° | 53.6° |
| C4' | C3' | C2' | H2'' | 100.4° | 142.9° |
| C3' | C4' | C6' | H6'' | 117.5° | 156.6° |
| O3' | C3' | C4' | H4' | 1.3° | 38.2° |
| O3' | C3' | C4' | C6' | 116.5° | 156.5° |
| O3' | C3' | C4' | C5' | 122.3° | 84.9° |
| O3' | C3' | C2' | H2'' | 136.8° | 98.5° |
| HO3' | O3' | C3' | H3 | 58.2° | 61.0° |
| H4' | C4' | C6' | C5' | 119.7° | 123.3° |
| H4' | C4' | C5' | H5'' | 63.7° | 63.3° |
| H4' | C4' | C5' | O5' | 176.2° | 56.7° |
| H4' | C4' | C6' | C1' | 115.2° | 80.4° |
| H4' | C4' | C6' | H6' | 4.7° | 161.0° |
| H4' | C4' | C5' | H5' | 56.2° | 176.7° |
| H4' | C4' | C3' | H3 | 117.1° | 161.0° |
| H4' | C4' | C6' | H6'' | 124.8° | 38.4° |
| C6' | C4' | C5' | H5'' | 56.0° | 60.1° |
| C6' | C4' | C5' | O5' | 64.0° | 179.9° |
| C4' | C6' | C1' | H6' | 119.9° | 118.6° |
| C4' | C6' | C1' | H6'' | 120.0° | 118.7° |
| C4' | C6' | H6' | H6'' | 120.2° | 122.6° |
| C6' | C4' | C5' | H5' | 175.9° | 59.9° |
| C6' | C4' | C3' | H3 | 125.1° | 80.7° |
| C4' | C5' | H5'' | O5' | 120.1° | 120.0° |
| C4' | C5' | H5'' | H5' | 119.9° | 120.0° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C5' | C4' | C6' | C1' | 125.0° | 156.3° |
| C5' | C4' | C6' | H6' | 115.0° | 37.7° |
| C5' | C4' | C3' | H3 | 4.0° | 37.8° |
| C5' | C4' | C6' | H6'' | 5.1° | 85.0° |
| H5'' | C5' | O5' | H5' | 119.9° | 120.0° |
| C1' | C6' | H6' | H6'' | 120.2° | 122.7° |
| C6' | C1' | N5 | H5 | 128.3° | 24.4° |
| C6' | C1' | C2' | H2'' | 98.9° | 119.4° |
| HN7 | N4 | C5 | HN9 | 0.2° | 4.8° |
| H2'' | C2' | C3' | H3 | 14.4° | 24.2° |
