LST
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C7 | C5 | sing | 1.51Å | 1.49Å | |
| OP2 | P | sing | 1.61Å | 1.53Å | |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| P | OP1 | doub | 1.48Å | 1.46Å | |
| P | O5' | sing | 1.61Å | 1.63Å | |
| C5 | C4 | sing | 1.42Å | 1.44Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C4 | N3 | sing | 1.35Å | 1.37Å | |
| C6 | N1 | sing | 1.37Å | 1.38Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| N3 | C2 | sing | 1.35Å | 1.34Å | |
| N1 | C2 | sing | 1.35Å | 1.39Å | |
| N1 | C1' | sing | 1.47Å | 1.47Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| O4' | C1' | sing | 1.43Å | 1.44Å | |
| O4' | C4' | sing | 1.43Å | 1.46Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | C6' | sing | 1.54Å | 1.52Å | |
| C3' | C2' | sing | 1.55Å | 1.56Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C6' | S | sing | 1.82Å | 1.77Å | |
| C2' | N2' | sing | 1.48Å | 1.50Å | |
| O8' | S | doub | 1.42Å | 1.42Å | |
| S | N2' | sing | 1.67Å | 1.64Å | |
| S | O7' | doub | 1.42Å | 1.46Å | |
| N2' | C7' | sing | 1.47Å | 1.47Å | |
| C6 | H1 | sing | 1.08Å | 1.08Å | |
| C1' | H2 | sing | 1.09Å | 1.10Å | |
| C2' | H3 | sing | 1.09Å | 1.10Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| O3' | H5 | sing | 0.97Å | 0.95Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C6' | H8 | sing | 1.09Å | 1.10Å | |
| C6' | H9 | sing | 1.09Å | 1.10Å | |
| OP2 | H11 | sing | 0.97Å | 0.95Å | |
| C7' | H12 | sing | 1.09Å | 1.10Å | |
| C7' | H13 | sing | 1.09Å | 1.10Å | |
| C7' | H14 | sing | 1.09Å | 1.10Å | |
| C7 | H15 | sing | 1.09Å | 1.10Å | |
| C7 | H16 | sing | 1.09Å | 1.10Å | |
| C7 | H17 | sing | 1.09Å | 1.10Å | |
| N3 | H18 | sing | 0.97Å | 1.00Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| OP3 | H10 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C7 | C5 | C4 | 117.9° | 120.5° |
| C7 | C5 | C6 | 123.1° | 120.4° |
| C5 | C7 | H15 | 109.5° | 109.4° |
| C5 | C7 | H16 | 109.5° | 109.4° |
| C5 | C7 | H17 | 109.5° | 109.4° |
| OP2 | P | OP1 | 120.3° | 109.5° |
| OP2 | P | O5' | 104.4° | 109.5° |
| P | OP2 | H11 | 109.5° | 114.0° |
| OP2 | P | OP3 | 110.7° | 109.5° |
| O4 | C4 | C5 | 124.2° | 120.3° |
| O4 | C4 | N3 | 120.2° | 120.3° |
| OP1 | P | O5' | 112.0° | 109.5° |
| OP1 | P | OP3 | 104.7° | 109.5° |
| P | O5' | C5' | 116.1° | 123.0° |
| O5' | P | OP3 | 103.5° | 109.5° |
| C4 | C5 | C6 | 119.0° | 119.1° |
| C5 | C4 | N3 | 115.5° | 119.4° |
| C5 | C6 | N1 | 121.7° | 119.7° |
| C5 | C6 | H1 | 119.2° | 120.1° |
| C4 | N3 | C2 | 127.2° | 120.3° |
| C4 | N3 | H18 | 116.4° | 119.9° |
| C6 | N1 | C2 | 121.2° | 120.6° |
| C6 | N1 | C1' | 124.1° | 119.7° |
| N1 | C6 | H1 | 119.1° | 120.2° |
| O5' | C5' | C4' | 105.3° | 109.5° |
| O5' | C5' | H6 | 110.5° | 109.5° |
| O5' | C5' | H7 | 110.5° | 109.5° |
| N3 | C2 | N1 | 115.4° | 120.9° |
| N3 | C2 | O2 | 123.0° | 119.6° |
| C2 | N3 | H18 | 116.5° | 119.8° |
| C2 | N1 | C1' | 114.8° | 119.7° |
| N1 | C2 | O2 | 121.6° | 119.5° |
| N1 | C1' | O4' | 107.7° | 109.9° |
| N1 | C1' | C2' | 112.2° | 109.8° |
| N1 | C1' | H2 | 110.6° | 109.8° |
| C5' | C4' | O4' | 112.1° | 112.1° |
| C5' | C4' | C3' | 115.9° | 111.4° |
| C5' | C4' | C6' | 108.0° | 111.3° |
| C4' | C5' | H6 | 110.5° | 109.5° |
| C4' | C5' | H7 | 110.5° | 109.5° |
| C1' | O4' | C4' | 110.6° | 110.3° |
| O4' | C1' | C2' | 105.2° | 107.6° |
| O4' | C1' | H2 | 111.1° | 109.9° |
| O4' | C4' | C3' | 101.2° | 105.4° |
| O4' | C4' | C6' | 110.0° | 108.8° |
| C1' | C2' | C3' | 99.4° | 102.0° |
| C1' | C2' | N2' | 113.6° | 106.4° |
| C2' | C1' | H2 | 109.9° | 109.8° |
| C1' | C2' | H3 | 109.6° | 113.5° |
| C3' | C4' | C6' | 109.5° | 107.6° |
| C4' | C3' | C2' | 99.3° | 101.3° |
| C4' | C3' | O3' | 110.5° | 111.1° |
| C4' | C3' | H4 | 110.5° | 111.1° |
| C4' | C6' | S | 114.7° | 108.4° |
| C4' | C6' | H8 | 108.2° | 109.7° |
| C4' | C6' | H9 | 108.1° | 109.7° |
| C2' | C3' | O3' | 113.8° | 111.0° |
| C3' | C2' | N2' | 114.5° | 106.2° |
| C3' | C2' | H3 | 109.2° | 114.4° |
| C2' | C3' | H4 | 110.2° | 111.0° |
| O3' | C3' | H4 | 111.9° | 110.9° |
| C3' | O3' | H5 | 109.5° | 114.0° |
| C6' | S | O8' | 108.6° | 110.7° |
| C6' | S | N2' | 104.5° | 103.1° |
| C6' | S | O7' | 109.1° | 110.8° |
| S | C6' | H8 | 108.2° | 109.7° |
| S | C6' | H9 | 108.2° | 109.7° |
| C2' | N2' | S | 114.3° | 116.5° |
| C2' | N2' | C7' | 116.2° | 121.8° |
| N2' | C2' | H3 | 110.0° | 113.4° |
| O8' | S | N2' | 109.9° | 104.5° |
| O8' | S | O7' | 118.6° | 121.3° |
| N2' | S | O7' | 105.4° | 104.5° |
| S | N2' | C7' | 115.0° | 121.7° |
| N2' | C7' | H12 | 109.5° | 109.5° |
| N2' | C7' | H13 | 109.5° | 109.5° |
| N2' | C7' | H14 | 109.4° | 109.5° |
| H6 | C5' | H7 | 109.5° | 109.5° |
| H8 | C6' | H9 | 109.5° | 109.7° |
| H12 | C7' | H13 | 109.4° | 109.4° |
| H12 | C7' | H14 | 109.5° | 109.5° |
| H13 | C7' | H14 | 109.5° | 109.5° |
| H15 | C7 | H16 | 109.5° | 109.5° |
| H15 | C7 | H17 | 109.4° | 109.5° |
| H16 | C7 | H17 | 109.5° | 109.5° |
| P | OP3 | H10 | 109.5° | 114.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C7 | C5 | C4 | O4 | 0.6° | 0.0° |
| C7 | C5 | C4 | C6 | 179.6° | 179.8° |
| C7 | C5 | C4 | N3 | 178.4° | 180.0° |
| C7 | C5 | C6 | N1 | 179.1° | 180.0° |
| C7 | C5 | C6 | H1 | 0.9° | 0.2° |
| C5 | C7 | H15 | H16 | 120.0° | 119.9° |
| C5 | C7 | H15 | H17 | 120.0° | 120.0° |
| C5 | C7 | H16 | H17 | 120.0° | 120.0° |
| OP2 | P | OP1 | O5' | 123.2° | 120.0° |
| OP2 | P | OP1 | OP3 | 125.3° | 120.0° |
| OP2 | P | O5' | OP3 | 116.0° | 120.0° |
| OP2 | P | O5' | C5' | 172.1° | 65.0° |
| OP2 | P | OP3 | H10 | 131.1° | 60.0° |
| O4 | C4 | C5 | N3 | 179.0° | 180.0° |
| O4 | C4 | C5 | C6 | 179.8° | 179.8° |
| O4 | C4 | N3 | C2 | 178.8° | 180.0° |
| O4 | C4 | N3 | H18 | 1.2° | 0.0° |
| OP1 | P | O5' | OP3 | 112.3° | 120.0° |
| OP1 | P | O5' | C5' | 40.4° | 55.0° |
| OP1 | P | OP2 | H11 | 0.0° | 180.0° |
| OP1 | P | OP3 | H10 | 0.0° | 60.0° |
| P | O5' | C5' | C4' | 176.6° | 180.0° |
| P | O5' | C5' | H6 | 64.1° | 60.0° |
| P | O5' | C5' | H7 | 57.3° | 60.0° |
| O5' | P | OP2 | H11 | 126.7° | 60.0° |
| O5' | P | OP3 | H10 | 117.6° | 180.0° |
| C4 | C5 | C6 | N1 | 0.5° | 0.2° |
| C5 | C4 | N3 | C2 | 0.2° | 0.0° |
| C4 | C5 | C6 | H1 | 179.5° | 180.0° |
| C4 | C5 | C7 | H15 | 180.0° | 0.0° |
| C4 | C5 | C7 | H16 | 60.0° | 120.0° |
| C4 | C5 | C7 | H17 | 60.0° | 120.0° |
| C5 | C4 | N3 | H18 | 179.8° | 180.0° |
| C6 | C5 | C4 | N3 | 1.2° | 0.2° |
| C5 | C6 | N1 | H1 | 180.0° | 179.8° |
| C5 | C6 | N1 | C2 | 1.7° | 0.1° |
| C5 | C6 | N1 | C1' | 177.6° | 180.0° |
| C6 | C5 | C7 | H15 | 0.4° | 179.8° |
| C6 | C5 | C7 | H16 | 119.6° | 60.3° |
| C6 | C5 | C7 | H17 | 120.4° | 59.8° |
| C4 | N3 | C2 | H18 | 180.0° | 180.0° |
| C4 | N3 | C2 | N1 | 2.3° | 0.3° |
| C4 | N3 | C2 | O2 | 178.4° | 180.0° |
| C6 | N1 | C2 | N3 | 2.9° | 0.3° |
| C6 | N1 | C2 | C1' | 179.4° | 180.0° |
| C6 | N1 | C1' | O4' | 19.2° | 23.9° |
| C6 | N1 | C2 | O2 | 177.7° | 180.0° |
| C6 | N1 | C1' | C2' | 96.1° | 94.2° |
| C6 | N1 | C1' | H2 | 140.8° | 144.9° |
| O5' | C5' | C4' | H6 | 119.4° | 120.0° |
| O5' | C5' | C4' | H7 | 119.3° | 120.0° |
| O5' | C5' | C4' | O4' | 62.7° | 67.2° |
| O5' | C5' | C4' | C3' | 52.8° | 175.0° |
| O5' | C5' | C4' | C6' | 176.0° | 54.9° |
| O5' | C5' | H6 | H7 | 122.0° | 120.0° |
| C5' | O5' | P | OP3 | 72.0° | 175.0° |
| N3 | C2 | N1 | O2 | 179.3° | 179.7° |
| N3 | C2 | N1 | C1' | 176.4° | 179.7° |
| C2 | N1 | C1' | O4' | 160.2° | 156.0° |
| C2 | N1 | C1' | C2' | 84.6° | 85.8° |
| C2 | N1 | C6 | H1 | 178.3° | 179.7° |
| C2 | N1 | C1' | H2 | 38.5° | 35.1° |
| N1 | C2 | N3 | H18 | 177.7° | 179.7° |
| N1 | C1' | O4' | C2' | 119.8° | 119.5° |
| N1 | C1' | O4' | H2 | 121.3° | 121.0° |
| N1 | C1' | O4' | C4' | 114.1° | 119.2° |
| C1' | N1 | C2 | O2 | 2.9° | 0.0° |
| N1 | C1' | C2' | H2 | 123.5° | 120.9° |
| N1 | C1' | C2' | C3' | 83.7° | 97.2° |
| N1 | C1' | C2' | N2' | 154.3° | 151.7° |
| C1' | N1 | C6 | H1 | 2.4° | 0.2° |
| N1 | C1' | C2' | H3 | 30.7° | 26.3° |
| C5' | C4' | O4' | C1' | 148.8° | 143.6° |
| C5' | C4' | O4' | C3' | 124.1° | 121.3° |
| C5' | C4' | O4' | C6' | 120.1° | 123.5° |
| C5' | C4' | C3' | C6' | 122.4° | 122.3° |
| C5' | C4' | C3' | C2' | 165.5° | 156.9° |
| C5' | C4' | C3' | O3' | 74.6° | 85.1° |
| C5' | C4' | C6' | S | 172.2° | 172.9° |
| C5' | C4' | C3' | H4 | 49.7° | 38.9° |
| C4' | C5' | H6 | H7 | 121.9° | 120.0° |
| C5' | C4' | C6' | H8 | 67.0° | 67.3° |
| C5' | C4' | C6' | H9 | 51.4° | 53.2° |
| O4' | C1' | C2' | H2 | 119.7° | 119.6° |
| C1' | O4' | C4' | C3' | 24.8° | 22.3° |
| C1' | O4' | C4' | C6' | 91.0° | 92.8° |
| O4' | C1' | C2' | C3' | 33.1° | 22.3° |
| O4' | C1' | C2' | N2' | 89.0° | 88.8° |
| O4' | C1' | C2' | H3 | 147.5° | 145.9° |
| C4' | O4' | C1' | C2' | 5.7° | 0.3° |
| O4' | C4' | C3' | C6' | 116.2° | 116.0° |
| O4' | C4' | C3' | C2' | 44.0° | 35.2° |
| O4' | C4' | C3' | O3' | 163.9° | 153.2° |
| O4' | C4' | C6' | S | 49.6° | 48.9° |
| C4' | O4' | C1' | H2 | 124.6° | 119.8° |
| O4' | C4' | C3' | H4 | 71.7° | 82.9° |
| O4' | C4' | C5' | H6 | 178.0° | 172.8° |
| O4' | C4' | C5' | H7 | 56.7° | 52.8° |
| O4' | C4' | C6' | H8 | 170.4° | 168.7° |
| O4' | C4' | C6' | H9 | 71.2° | 70.8° |
| O2 | C2 | N3 | H18 | 1.6° | 0.0° |
| C1' | C2' | C3' | C4' | 47.0° | 33.9° |
| C1' | C2' | C3' | N2' | 121.4° | 111.2° |
| C1' | C2' | C3' | H3 | 114.7° | 123.0° |
| C1' | C2' | C3' | O3' | 164.4° | 152.0° |
| C1' | C2' | N2' | H3 | 123.3° | 125.5° |
| C1' | C2' | N2' | S | 52.4° | 43.0° |
| C1' | C2' | N2' | C7' | 85.3° | 137.0° |
| C1' | C2' | C3' | H4 | 69.0° | 84.2° |
| C4' | C3' | C2' | O3' | 117.4° | 118.1° |
| C4' | C3' | C2' | H4 | 116.0° | 118.1° |
| C4' | C3' | O3' | H4 | 123.6° | 124.1° |
| C3' | C4' | C6' | S | 60.9° | 64.8° |
| C4' | C3' | C2' | N2' | 74.5° | 77.3° |
| C4' | C3' | C2' | H3 | 161.7° | 156.9° |
| C4' | C3' | O3' | H5 | 180.0° | 173.4° |
| C3' | C4' | C5' | H6 | 66.6° | 55.0° |
| C3' | C4' | C5' | H7 | 172.1° | 65.0° |
| C3' | C4' | C6' | H8 | 59.9° | 55.0° |
| C3' | C4' | C6' | H9 | 178.4° | 175.5° |
| C6' | C4' | C3' | C2' | 72.1° | 80.8° |
| C6' | C4' | C3' | O3' | 47.8° | 37.2° |
| C4' | C6' | S | H8 | 120.8° | 119.8° |
| C4' | C6' | S | H9 | 120.8° | 119.7° |
| C4' | C6' | S | O8' | 78.5° | 67.5° |
| C4' | C6' | S | N2' | 38.7° | 43.7° |
| C4' | C6' | S | O7' | 151.0° | 155.0° |
| C6' | C4' | C3' | H4 | 172.1° | 161.2° |
| C6' | C4' | C5' | H6 | 56.7° | 65.1° |
| C6' | C4' | C5' | H7 | 64.6° | 174.9° |
| C4' | C6' | H8 | H9 | 117.6° | 120.5° |
| C2' | C3' | O3' | H4 | 125.7° | 123.9° |
| C3' | C2' | N2' | H3 | 123.4° | 126.4° |
| C3' | C2' | N2' | S | 60.8° | 65.1° |
| C3' | C2' | N2' | C7' | 161.5° | 114.9° |
| C3' | C2' | C1' | H2 | 152.8° | 141.9° |
| C2' | C3' | O3' | H5 | 69.3° | 61.4° |
| O3' | C3' | C2' | N2' | 42.9° | 40.8° |
| O3' | C3' | C2' | H3 | 80.9° | 85.0° |
| C6' | S | N2' | C2' | 36.9° | 45.8° |
| C6' | S | O8' | N2' | 113.7° | 110.3° |
| C6' | S | O8' | O7' | 125.1° | 132.3° |
| C6' | S | N2' | O7' | 114.9° | 115.9° |
| C6' | S | N2' | C7' | 175.1° | 134.1° |
| S | C6' | H8 | H9 | 117.6° | 120.5° |
| C2' | N2' | S | O8' | 79.4° | 70.0° |
| C2' | N2' | S | C7' | 138.2° | 180.0° |
| C2' | N2' | S | O7' | 151.8° | 161.7° |
| N2' | C2' | C1' | H2 | 30.8° | 30.8° |
| N2' | C2' | C3' | H4 | 169.6° | 164.6° |
| C2' | N2' | C7' | H12 | 137.4° | 90.0° |
| C2' | N2' | C7' | H13 | 17.4° | 150.0° |
| C2' | N2' | C7' | H14 | 102.6° | 30.0° |
| O8' | S | N2' | O7' | 128.8° | 128.4° |
| O8' | S | N2' | C7' | 58.8° | 110.1° |
| O8' | S | C6' | H8 | 160.7° | 172.7° |
| O8' | S | C6' | H9 | 42.3° | 52.2° |
| S | N2' | C2' | H3 | 175.8° | 168.5° |
| N2' | S | C6' | H8 | 82.1° | 76.1° |
| N2' | S | C6' | H9 | 159.4° | 163.4° |
| S | N2' | C7' | H12 | 0.0° | 89.9° |
| S | N2' | C7' | H13 | 120.0° | 30.0° |
| S | N2' | C7' | H14 | 120.0° | 150.0° |
| O7' | S | N2' | C7' | 70.0° | 18.3° |
| O7' | S | C6' | H8 | 30.2° | 35.2° |
| O7' | S | C6' | H9 | 88.3° | 85.3° |
| C7' | N2' | C2' | H3 | 38.1° | 11.6° |
| N2' | C7' | H12 | H13 | 120.0° | 120.0° |
| N2' | C7' | H12 | H14 | 120.0° | 120.0° |
| N2' | C7' | H13 | H14 | 120.0° | 120.0° |
| H2 | C1' | C2' | H3 | 92.8° | 94.6° |
| H3 | C2' | C3' | H4 | 45.7° | 38.8° |
| H4 | C3' | O3' | H5 | 56.4° | 62.5° |
| H11 | OP2 | P | OP3 | 122.4° | 60.0° |
| H12 | C7' | H13 | H14 | 120.0° | 120.0° |
| H15 | C7 | H16 | H17 | 119.9° | 120.1° |
