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Summary Geometry Related PDB entries

LRF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N1	sing	1.47Å	1.45Å
N1	C2	sing	1.47Å	1.46Å
C2	C3	sing	1.51Å	1.52Å
C3	O1	doub	1.21Å	1.24Å
C3	N2	sing	1.35Å	1.33Å
N1	C4	sing	1.38Å	1.34Å
C4	S1	sing	1.72Å	1.74Å	Aromatic
S1	N3	sing	1.69Å	1.68Å	Aromatic
N3	C5	doub	1.29Å	1.36Å	Aromatic
C5	C6	sing	1.51Å	1.49Å
C5	C7	sing	1.39Å	1.42Å	Aromatic
C7	C8	sing	1.43Å	1.41Å
C8	N4	trip	1.14Å	1.13Å
C4	C7	doub	1.39Å	1.39Å	Aromatic
C6	H9	sing	1.09Å	1.10Å
C6	H8	sing	1.09Å	1.10Å
C6	H10	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C2	H5	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
N2	H6	sing	0.97Å	1.00Å
N2	H7	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N1	C2	116.8°	111.0°
C1	N1	C4	119.8°	111.0°
N1	C1	H3	109.5°	109.5°
N1	C1	H1	109.5°	109.4°
N1	C1	H2	109.5°	109.5°
N1	C2	C3	114.7°	109.5°
C2	N1	C4	123.2°	111.0°
N1	C2	H5	108.2°	109.5°
N1	C2	H4	108.2°	109.5°
C2	C3	O1	120.1°	120.0°
C2	C3	N2	115.6°	120.0°
C3	C2	H5	108.1°	109.5°
C3	C2	H4	108.2°	109.4°
O1	C3	N2	124.3°	120.0°
C3	N2	H6	120.0°	120.0°
C3	N2	H7	120.0°	120.0°
N1	C4	S1	122.9°	127.4°
N1	C4	C7	127.0°	127.3°
C4	S1	N3	92.5°	96.1°
S1	C4	C7	110.2°	105.3°
S1	N3	C5	112.2°	108.1°
N3	C5	C6	120.0°	121.5°
N3	C5	C7	113.4°	117.0°
C6	C5	C7	126.6°	121.5°
C5	C6	H9	109.5°	109.5°
C5	C6	H8	109.5°	109.5°
C5	C6	H10	109.4°	109.5°
C5	C7	C8	126.1°	123.3°
C5	C7	C4	111.1°	113.5°
C7	C8	N4	176.1°	180.0°
C8	C7	C4	122.8°	123.2°
H9	C6	H8	109.5°	109.4°
H9	C6	H10	109.5°	109.5°
H8	C6	H10	109.5°	109.5°
H3	C1	H1	109.5°	109.4°
H3	C1	H2	109.5°	109.5°
H1	C1	H2	109.5°	109.5°
H5	C2	H4	109.4°	109.5°
H6	N2	H7	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N1	C2	C4	174.9°	123.9°
C1	N1	C2	C3	48.6°	66.0°
C1	N1	C4	S1	29.1°	123.9°
C1	N1	C4	C7	150.8°	56.0°
N1	C1	H3	H1	120.0°	119.9°
N1	C1	H3	H2	120.0°	120.0°
N1	C1	H1	H2	120.0°	120.0°
C1	N1	C2	H5	169.4°	174.0°
C1	N1	C2	H4	72.2°	53.9°
N1	C2	C3	H5	120.8°	120.0°
N1	C2	C3	H4	120.8°	120.0°
N1	C2	C3	O1	49.7°	0.0°
N1	C2	C3	N2	129.9°	180.0°
C2	N1	C4	S1	145.7°	0.0°
C2	N1	C4	C7	34.4°	180.0°
C2	N1	C1	H3	180.0°	60.0°
C2	N1	C1	H1	60.0°	180.0°
C2	N1	C1	H2	60.0°	60.0°
N1	C2	H5	H4	117.6°	120.1°
C2	C3	O1	N2	179.6°	180.0°
C3	C2	N1	C4	136.4°	170.0°
C3	C2	H5	H4	117.6°	120.0°
C2	C3	N2	H6	179.6°	0.0°
C2	C3	N2	H7	0.4°	180.0°
O1	C3	C2	H5	71.1°	120.0°
O1	C3	C2	H4	170.5°	120.0°
O1	C3	N2	H6	0.0°	179.9°
O1	C3	N2	H7	180.0°	0.0°
N2	C3	C2	H5	109.3°	60.0°
N2	C3	C2	H4	9.1°	60.0°
C3	N2	H6	H7	180.0°	179.9°
N1	C4	S1	C7	179.9°	180.0°
N1	C4	S1	N3	179.2°	180.0°
N1	C4	C7	C5	174.5°	180.0°
N1	C4	C7	C8	2.8°	0.0°
C4	N1	C1	H3	4.9°	63.9°
C4	N1	C1	H1	124.9°	56.0°
C4	N1	C1	H2	115.1°	176.1°
C4	N1	C2	H5	15.7°	50.0°
C4	N1	C2	H4	102.8°	70.0°
C4	S1	N3	C5	4.4°	0.0°
S1	C4	C7	C5	5.6°	0.0°
S1	C4	C7	C8	177.1°	180.0°
S1	N3	C5	C6	170.6°	179.9°
S1	N3	C5	C7	8.6°	0.0°
N3	S1	C4	C7	0.8°	0.0°
N3	C5	C6	C7	179.1°	179.9°
N3	C5	C7	C8	173.6°	180.0°
N3	C5	C7	C4	9.2°	0.0°
N3	C5	C6	H9	0.0°	90.0°
N3	C5	C6	H8	120.0°	150.0°
N3	C5	C6	H10	120.0°	30.0°
C6	C5	C7	C8	7.2°	0.0°
C6	C5	C7	C4	170.0°	180.0°
C5	C6	H9	H8	120.0°	120.0°
C5	C6	H9	H10	120.0°	120.0°
C5	C6	H8	H10	120.0°	120.0°
C5	C7	C8	C4	176.9°	180.0°
C5	C7	C8	N4	135.2°	58.1°
C7	C5	C6	H9	179.1°	90.0°
C7	C5	C6	H8	59.1°	30.0°
C7	C5	C6	H10	60.9°	150.0°
N4	C8	C7	C4	41.7°	121.9°
H9	C6	H8	H10	120.0°	120.0°
H3	C1	H1	H2	120.0°	120.0°

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PDB entries from 2026-01-14

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