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Summary Geometry Related PDB entries

LNS

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	C8	doub	1.21Å	1.24Å
C8	O2	sing	1.35Å	1.24Å
C8	C7	sing	1.48Å	1.51Å
C6	C7	doub	1.40Å	1.39Å	Aromatic
C6	C5	sing	1.39Å	1.38Å	Aromatic
C7	N2	sing	1.32Å	1.35Å	Aromatic
C5	C4	doub	1.39Å	1.38Å	Aromatic
N2	C3	doub	1.32Å	1.34Å	Aromatic
C4	C3	sing	1.40Å	1.39Å	Aromatic
C3	C2	sing	1.48Å	1.51Å
C2	N1	sing	1.35Å	1.33Å
C2	O1	doub	1.21Å	1.23Å
N1	C1	sing	1.47Å	1.45Å
N1	H1	sing	0.97Å	1.00Å
C4	H2	sing	1.08Å	1.08Å
C5	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C1	H5	sing	1.09Å	1.10Å
C1	H6	sing	1.09Å	1.10Å
C1	H7	sing	1.09Å	1.10Å
O2	H8	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	C8	O2	126.2°	120.0°
O3	C8	C7	117.2°	120.0°
O2	C8	C7	116.6°	120.0°
C8	O2	H8	109.5°	117.0°
C8	C7	C6	119.6°	119.7°
C8	C7	N2	117.0°	119.6°
C7	C6	C5	118.2°	119.2°
C6	C7	N2	123.3°	120.7°
C7	C6	H4	120.9°	120.4°
C6	C5	C4	119.5°	118.5°
C6	C5	H3	120.3°	120.8°
C5	C6	H4	120.9°	120.4°
C7	N2	C3	117.5°	121.5°
C5	C4	C3	118.9°	119.3°
C5	C4	H2	120.6°	120.4°
C4	C5	H3	120.2°	120.7°
N2	C3	C4	122.6°	120.7°
N2	C3	C2	118.1°	119.7°
C4	C3	C2	119.3°	119.6°
C3	C4	H2	120.6°	120.3°
C3	C2	N1	116.8°	120.0°
C3	C2	O1	120.5°	120.0°
N1	C2	O1	122.8°	120.0°
C2	N1	C1	122.5°	120.0°
C2	N1	H1	118.8°	120.0°
C1	N1	H1	118.7°	120.0°
N1	C1	H5	109.5°	109.5°
N1	C1	H6	109.5°	109.4°
N1	C1	H7	109.5°	109.4°
H5	C1	H6	109.5°	109.5°
H5	C1	H7	109.4°	109.5°
H6	C1	H7	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	C8	O2	C7	178.9°	180.0°
O3	C8	C7	C6	1.7°	0.0°
O3	C8	C7	N2	178.8°	180.0°
O3	C8	O2	H8	0.0°	0.0°
O2	C8	C7	C6	177.3°	179.9°
O2	C8	C7	N2	2.2°	0.0°
C8	C7	C6	N2	179.5°	179.9°
C8	C7	C6	C5	179.2°	180.0°
C8	C7	N2	C3	178.8°	180.0°
C8	C7	C6	H4	0.8°	0.0°
C7	C8	O2	H8	178.9°	180.0°
C7	C6	C5	H4	180.0°	180.0°
C7	C6	C5	C4	0.4°	0.0°
C6	C7	N2	C3	0.7°	0.1°
C7	C6	C5	H3	179.6°	180.0°
C5	C6	C7	N2	0.3°	0.1°
C6	C5	C4	H3	180.0°	180.0°
C6	C5	C4	C3	0.6°	0.0°
C6	C5	C4	H2	179.4°	179.7°
C7	N2	C3	C4	0.5°	0.0°
C7	N2	C3	C2	178.8°	179.7°
N2	C7	C6	H4	179.7°	180.0°
C5	C4	C3	N2	0.2°	0.1°
C5	C4	C3	H2	180.0°	179.8°
C5	C4	C3	C2	179.4°	179.7°
C4	C5	C6	H4	179.6°	180.0°
N2	C3	C4	C2	179.2°	179.7°
N2	C3	C2	N1	0.8°	0.3°
N2	C3	C2	O1	179.9°	179.7°
N2	C3	C4	H2	179.8°	179.7°
C4	C3	C2	N1	178.5°	180.0°
C4	C3	C2	O1	0.6°	0.1°
C3	C4	C5	H3	179.4°	180.0°
C3	C2	N1	O1	179.1°	179.9°
C3	C2	N1	C1	176.7°	180.0°
C3	C2	N1	H1	3.3°	0.3°
C2	C3	C4	H2	0.6°	0.0°
C2	N1	C1	H1	180.0°	179.7°
C2	N1	C1	H5	180.0°	59.6°
C2	N1	C1	H6	60.0°	60.4°
C2	N1	C1	H7	60.0°	179.7°
O1	C2	N1	C1	2.4°	0.1°
O1	C2	N1	H1	177.6°	179.7°
N1	C1	H5	H6	120.0°	119.9°
N1	C1	H5	H7	120.0°	120.0°
N1	C1	H6	H7	120.0°	119.9°
H1	N1	C1	H5	0.0°	120.0°
H1	N1	C1	H6	120.0°	120.0°
H1	N1	C1	H7	120.0°	0.0°
H2	C4	C5	H3	0.6°	0.3°
H3	C5	C6	H4	0.3°	0.0°
H5	C1	H6	H7	119.9°	120.1°

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PDB entries from 2024-07-17

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