LN5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CH1 | CT1 | sing | 1.53Å | 1.52Å | |
| CZ | CH1 | sing | 1.51Å | 1.52Å | |
| CZ | NH2 | doub | 1.29Å | 1.42Å | |
| NH2 | H1H2 | sing | 0.97Å | 1.00Å | |
| NE | CZ | sing | 1.37Å | 1.46Å | |
| CD | NE | sing | 1.47Å | 1.48Å | |
| CG | CD | sing | 1.53Å | 1.54Å | |
| CB | CG | sing | 1.53Å | 1.56Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| C | OA1 | sing | 1.34Å | 1.25Å | |
| OA2 | C | doub | 1.21Å | 1.25Å | |
| N | CA | sing | 1.47Å | 1.47Å | |
| CT1 | H1T1 | sing | 1.09Å | 1.10Å | |
| CT1 | H2T1 | sing | 1.09Å | 1.10Å | |
| CT1 | H3T1 | sing | 1.09Å | 1.10Å | |
| CH1 | H1H1 | sing | 1.09Å | 1.10Å | |
| CH1 | H2H1 | sing | 1.09Å | 1.10Å | |
| NE | HNE | sing | 0.97Å | 1.00Å | |
| CD | H1D | sing | 1.09Å | 1.10Å | |
| CD | H2D | sing | 1.09Å | 1.10Å | |
| CG | H1G | sing | 1.09Å | 1.10Å | |
| CG | H2G | sing | 1.09Å | 1.10Å | |
| CB | H1B | sing | 1.09Å | 1.10Å | |
| CB | H2B | sing | 1.09Å | 1.10Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| OA1 | H15 | sing | 0.97Å | 0.95Å | |
| N | H1N | sing | 1.01Å | 1.00Å | |
| N | H2N | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CT1 | CH1 | CZ | 113.9° | 109.5° |
| CH1 | CT1 | H1T1 | 109.5° | 109.5° |
| CH1 | CT1 | H2T1 | 109.5° | 109.4° |
| CH1 | CT1 | H3T1 | 109.5° | 109.5° |
| CT1 | CH1 | H1H1 | 108.0° | 109.5° |
| CT1 | CH1 | H2H1 | 107.0° | 109.4° |
| CH1 | CZ | NH2 | 109.6° | 120.0° |
| CH1 | CZ | NE | 112.4° | 120.0° |
| CZ | CH1 | H1H1 | 108.0° | 109.5° |
| CZ | CH1 | H2H1 | 107.0° | 109.5° |
| CZ | NH2 | H1H2 | 105.9° | 120.0° |
| NH2 | CZ | NE | 99.1° | 120.0° |
| CZ | NE | CD | 118.2° | 120.0° |
| CZ | NE | HNE | 120.9° | 120.0° |
| NE | CD | CG | 109.6° | 109.5° |
| CD | NE | HNE | 120.9° | 120.0° |
| NE | CD | H1D | 109.4° | 109.4° |
| NE | CD | H2D | 109.4° | 109.4° |
| CD | CG | CB | 111.9° | 109.5° |
| CG | CD | H1D | 109.4° | 109.5° |
| CG | CD | H2D | 109.4° | 109.5° |
| CD | CG | H1G | 108.7° | 109.5° |
| CD | CG | H2G | 108.1° | 109.5° |
| CG | CB | CA | 113.1° | 109.5° |
| CB | CG | H1G | 108.7° | 109.5° |
| CB | CG | H2G | 108.2° | 109.5° |
| CG | CB | H1B | 108.3° | 109.4° |
| CG | CB | H2B | 107.5° | 109.4° |
| C | CA | CB | 111.1° | 109.4° |
| CA | C | OA1 | 117.0° | 120.0° |
| CA | C | OA2 | 116.9° | 120.0° |
| C | CA | N | 108.4° | 109.5° |
| C | CA | HA | 109.4° | 109.5° |
| CB | CA | N | 110.2° | 109.4° |
| CA | CB | H1B | 108.3° | 109.5° |
| CA | CB | H2B | 107.5° | 109.5° |
| CB | CA | HA | 107.5° | 109.4° |
| OA1 | C | OA2 | 126.0° | 120.0° |
| C | OA1 | H15 | 109.5° | 117.0° |
| N | CA | HA | 110.3° | 109.5° |
| CA | N | H1N | 109.5° | 111.0° |
| CA | N | H2N | 109.5° | 111.0° |
| H1T1 | CT1 | H2T1 | 109.5° | 109.5° |
| H1T1 | CT1 | H3T1 | 109.5° | 109.5° |
| H2T1 | CT1 | H3T1 | 109.5° | 109.5° |
| H1H1 | CH1 | H2H1 | 113.0° | 109.5° |
| H1D | CD | H2D | 109.6° | 109.5° |
| H1G | CG | H2G | 111.4° | 109.4° |
| H1B | CB | H2B | 112.3° | 109.5° |
| H1N | N | H2N | 109.5° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CT1 | CH1 | CZ | H1H1 | 120.0° | 120.0° |
| CT1 | CH1 | CZ | H2H1 | 118.0° | 119.9° |
| CT1 | CH1 | CZ | NH2 | 12.1° | 0.0° |
| CT1 | CH1 | CZ | NE | 97.0° | 180.0° |
| CH1 | CT1 | H1T1 | H2T1 | 120.0° | 119.9° |
| CH1 | CT1 | H1T1 | H3T1 | 120.0° | 120.0° |
| CH1 | CT1 | H2T1 | H3T1 | 120.0° | 120.0° |
| CT1 | CH1 | H1H1 | H2H1 | 118.1° | 119.9° |
| CH1 | CZ | NH2 | NE | 117.8° | 180.0° |
| CH1 | CZ | NH2 | H1H2 | 180.0° | 180.0° |
| CH1 | CZ | NE | CD | 63.4° | 180.0° |
| CZ | CH1 | CT1 | H1T1 | 96.0° | 180.0° |
| CZ | CH1 | CT1 | H2T1 | 24.0° | 60.0° |
| CZ | CH1 | CT1 | H3T1 | 144.0° | 59.9° |
| CZ | CH1 | H1H1 | H2H1 | 118.2° | 120.0° |
| CH1 | CZ | NE | HNE | 116.6° | 0.0° |
| NH2 | CZ | NE | CD | 179.1° | 0.0° |
| NH2 | CZ | CH1 | H1H1 | 132.1° | 120.0° |
| NH2 | CZ | CH1 | H2H1 | 105.9° | 120.0° |
| NH2 | CZ | NE | HNE | 0.9° | 180.0° |
| H1H2 | NH2 | CZ | NE | 62.2° | 0.0° |
| CZ | NE | CD | HNE | 180.0° | 180.0° |
| CZ | NE | CD | CG | 171.9° | 180.0° |
| NE | CZ | CH1 | H1H1 | 23.0° | 60.0° |
| NE | CZ | CH1 | H2H1 | 145.0° | 60.0° |
| CZ | NE | CD | H1D | 68.1° | 60.1° |
| CZ | NE | CD | H2D | 51.9° | 60.0° |
| NE | CD | CG | H1D | 120.0° | 119.9° |
| NE | CD | CG | H2D | 120.0° | 120.0° |
| NE | CD | CG | CB | 177.0° | 180.0° |
| NE | CD | H1D | H2D | 120.0° | 120.0° |
| NE | CD | CG | H1G | 57.1° | 60.0° |
| NE | CD | CG | H2G | 64.0° | 60.0° |
| CD | CG | CB | H1G | 120.0° | 120.0° |
| CD | CG | CB | H2G | 119.0° | 120.1° |
| CD | CG | CB | CA | 176.6° | 180.0° |
| CG | CD | NE | HNE | 8.1° | 0.0° |
| CG | CD | H1D | H2D | 119.9° | 120.1° |
| CD | CG | H1G | H2G | 119.0° | 120.1° |
| CD | CG | CB | H1B | 63.4° | 60.0° |
| CD | CG | CB | H2B | 58.2° | 60.0° |
| CG | CB | CA | C | 68.4° | 175.0° |
| CG | CB | CA | H1B | 120.0° | 119.9° |
| CG | CB | CA | H2B | 118.4° | 120.0° |
| CG | CB | CA | N | 171.4° | 65.0° |
| CB | CG | CD | H1D | 63.0° | 60.1° |
| CB | CG | CD | H2D | 57.1° | 60.0° |
| CB | CG | H1G | H2G | 119.1° | 119.9° |
| CG | CB | H1B | H2B | 118.5° | 119.9° |
| CG | CB | CA | HA | 51.2° | 55.0° |
| C | CA | CB | N | 120.1° | 120.0° |
| C | CA | CB | HA | 119.6° | 120.0° |
| CA | C | OA1 | OA2 | 178.4° | 179.9° |
| C | CA | N | HA | 119.7° | 120.1° |
| C | CA | CB | H1B | 51.6° | 55.1° |
| C | CA | CB | H2B | 173.1° | 65.0° |
| CA | C | OA1 | H15 | 178.4° | 180.0° |
| C | CA | N | H1N | 93.4° | 60.0° |
| C | CA | N | H2N | 26.6° | 176.1° |
| CB | CA | C | OA1 | 86.2° | 80.1° |
| CB | CA | C | OA2 | 95.3° | 100.0° |
| CB | CA | N | HA | 118.5° | 119.9° |
| CA | CB | CG | H1G | 56.7° | 60.0° |
| CA | CB | CG | H2G | 64.4° | 59.9° |
| CA | CB | H1B | H2B | 118.5° | 120.1° |
| CB | CA | N | H1N | 144.9° | 60.0° |
| CB | CA | N | H2N | 95.1° | 63.9° |
| OA1 | C | CA | N | 152.6° | 160.0° |
| OA1 | C | CA | HA | 32.4° | 39.9° |
| OA2 | C | CA | N | 25.9° | 19.9° |
| OA2 | C | CA | HA | 146.2° | 140.0° |
| OA2 | C | OA1 | H15 | 0.0° | 0.1° |
| N | CA | CB | H1B | 68.6° | 175.0° |
| N | CA | CB | H2B | 53.0° | 55.0° |
| CA | N | H1N | H2N | 120.0° | 123.9° |
| H1T1 | CT1 | H2T1 | H3T1 | 120.0° | 120.1° |
| H1T1 | CT1 | CH1 | H1H1 | 24.0° | 59.9° |
| H1T1 | CT1 | CH1 | H2H1 | 145.9° | 60.0° |
| H2T1 | CT1 | CH1 | H1H1 | 144.0° | 60.0° |
| H2T1 | CT1 | CH1 | H2H1 | 94.1° | NaN° |
| H3T1 | CT1 | CH1 | H1H1 | 96.0° | 180.0° |
| H3T1 | CT1 | CH1 | H2H1 | 25.9° | 60.0° |
| HNE | NE | CD | H1D | 111.9° | 120.0° |
| HNE | NE | CD | H2D | 128.0° | 120.0° |
| H1D | CD | CG | H1G | 177.1° | 179.9° |
| H1D | CD | CG | H2G | 56.0° | 60.0° |
| H2D | CD | CG | H1G | 62.9° | 60.0° |
| H2D | CD | CG | H2G | 176.1° | 180.0° |
| H1G | CG | CB | H1B | 176.6° | 179.9° |
| H1G | CG | CB | H2B | 61.8° | 60.1° |
| H2G | CG | CB | H1B | 55.6° | 60.0° |
| H2G | CG | CB | H2B | 177.2° | 180.0° |
| H1B | CB | CA | HA | 171.2° | 65.0° |
| H2B | CB | CA | HA | 67.2° | 174.9° |
| HA | CA | N | H1N | 26.3° | 179.9° |
| HA | CA | N | H2N | 146.3° | 56.0° |
