LMQ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CB | CB2 | sing | 1.53Å | 1.54Å | |
| CB | CG | sing | 1.53Å | 1.55Å | |
| CG | CD | sing | 1.51Å | 1.52Å | |
| CD | OE1 | doub | 1.21Å | 1.24Å | |
| CD | NE2 | sing | 1.35Å | 1.32Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CB2 | HB21 | sing | 1.09Å | 1.10Å | |
| CB2 | HB22 | sing | 1.09Å | 1.10Å | |
| CB2 | HB23 | sing | 1.09Å | 1.10Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CG | HG3 | sing | 1.09Å | 1.10Å | |
| NE2 | HE21 | sing | 0.97Å | 1.00Å | |
| NE2 | HE22 | sing | 0.97Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | CB | 109.6° | 109.5° |
| N | CA | C | 108.7° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | HA | 111.3° | 109.5° |
| CB | CA | C | 113.3° | 109.4° |
| CA | CB | CB2 | 110.4° | 109.5° |
| CA | CB | CG | 112.7° | 109.4° |
| CB | CA | HA | 106.5° | 109.5° |
| CA | CB | HB3 | 106.7° | 109.5° |
| CA | C | O | 120.1° | 120.0° |
| CA | C | OXT | 117.0° | 120.0° |
| C | CA | HA | 107.5° | 109.4° |
| CB2 | CB | CG | 109.8° | 109.5° |
| CB2 | CB | HB3 | 109.7° | 109.5° |
| CB | CB2 | HB21 | 109.5° | 109.5° |
| CB | CB2 | HB22 | 109.5° | 109.5° |
| CB | CB2 | HB23 | 109.5° | 109.5° |
| CB | CG | CD | 115.1° | 109.5° |
| CG | CB | HB3 | 107.3° | 109.5° |
| CB | CG | HG2 | 107.6° | 109.5° |
| CB | CG | HG3 | 106.4° | 109.5° |
| CG | CD | OE1 | 121.6° | 120.0° |
| CG | CD | NE2 | 117.8° | 120.0° |
| CD | CG | HG2 | 107.7° | 109.4° |
| CD | CG | HG3 | 106.4° | 109.5° |
| OE1 | CD | NE2 | 120.0° | 120.0° |
| CD | NE2 | HE21 | 110.0° | 120.0° |
| CD | NE2 | HE22 | 125.0° | 120.0° |
| O | C | OXT | 122.9° | 120.0° |
| C | OXT | HXT | 109.5° | 116.9° |
| H | N | H2 | 109.4° | 110.9° |
| HB21 | CB2 | HB22 | 109.5° | 109.5° |
| HB21 | CB2 | HB23 | 109.5° | 109.4° |
| HB22 | CB2 | HB23 | 109.5° | 109.5° |
| HG2 | CG | HG3 | 114.0° | 109.5° |
| HE21 | NE2 | HE22 | 125.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | CB | C | 121.6° | 120.0° |
| N | CA | CB | HA | 120.5° | 120.0° |
| N | CA | C | HA | 120.5° | 120.0° |
| N | CA | CB | CB2 | 69.1° | 180.0° |
| N | CA | CB | CG | 54.1° | 60.0° |
| N | CA | C | O | 42.6° | 20.0° |
| N | CA | C | OXT | 140.4° | 160.0° |
| CA | N | H | H2 | 120.0° | 123.9° |
| N | CA | CB | HB3 | 171.7° | 60.0° |
| CB | CA | C | HA | 117.3° | 120.0° |
| CA | CB | CB2 | CG | 125.0° | 120.0° |
| CA | CB | CB2 | HB3 | 117.3° | 120.0° |
| CA | CB | CG | HB3 | 117.2° | 120.0° |
| CA | CB | CG | CD | 172.9° | 175.0° |
| CB | CA | C | O | 79.5° | 100.0° |
| CB | CA | C | OXT | 97.4° | 80.0° |
| CB | CA | N | H | 159.2° | 176.1° |
| CB | CA | N | H2 | 39.2° | 60.0° |
| CA | CB | CB2 | HB21 | 18.8° | 60.0° |
| CA | CB | CB2 | HB22 | 138.8° | 180.0° |
| CA | CB | CB2 | HB23 | 101.2° | 60.0° |
| CA | CB | CG | HG2 | 52.9° | 65.0° |
| CA | CB | CG | HG3 | 69.6° | 55.0° |
| C | CA | CB | CB2 | 169.3° | 60.0° |
| C | CA | CB | CG | 67.5° | 180.0° |
| CA | C | O | OXT | 176.8° | 180.0° |
| C | CA | N | H | 34.8° | 63.9° |
| C | CA | N | H2 | 85.2° | 60.0° |
| C | CA | CB | HB3 | 50.1° | 60.1° |
| CA | C | OXT | HXT | 176.8° | 180.0° |
| CB2 | CB | CG | HB3 | 119.2° | 120.0° |
| CB2 | CB | CG | CD | 49.3° | 65.0° |
| CB2 | CB | CA | HA | 51.4° | 60.0° |
| CB | CB2 | HB21 | HB22 | 120.0° | 120.0° |
| CB | CB2 | HB21 | HB23 | 120.0° | 120.0° |
| CB | CB2 | HB22 | HB23 | 120.0° | 120.0° |
| CB2 | CB | CG | HG2 | 70.7° | 55.0° |
| CB2 | CB | CG | HG3 | 166.8° | 175.0° |
| CB | CG | CD | HG2 | 120.0° | 120.0° |
| CB | CG | CD | HG3 | 117.5° | 120.0° |
| CB | CG | CD | OE1 | 114.3° | 0.0° |
| CB | CG | CD | NE2 | 56.9° | 180.0° |
| CG | CB | CA | HA | 174.6° | 60.0° |
| CG | CB | CB2 | HB21 | 106.2° | 60.0° |
| CG | CB | CB2 | HB22 | 13.8° | 60.0° |
| CG | CB | CB2 | HB23 | 133.8° | 179.9° |
| CB | CG | HG2 | HG3 | 117.7° | 120.1° |
| CG | CD | OE1 | NE2 | 171.0° | 180.0° |
| CD | CG | CB | HB3 | 69.9° | 55.0° |
| CD | CG | HG2 | HG3 | 117.7° | 120.0° |
| CG | CD | NE2 | HE21 | 4.1° | 0.0° |
| CG | CD | NE2 | HE22 | 175.9° | 180.0° |
| OE1 | CD | CG | HG2 | 5.7° | 120.0° |
| OE1 | CD | CG | HG3 | 128.2° | 120.0° |
| OE1 | CD | NE2 | HE21 | 175.5° | 180.0° |
| OE1 | CD | NE2 | HE22 | 4.5° | 0.0° |
| NE2 | CD | CG | HG2 | 176.9° | 60.0° |
| NE2 | CD | CG | HG3 | 60.6° | 60.0° |
| CD | NE2 | HE21 | HE22 | 180.0° | 180.0° |
| O | C | CA | HA | 163.2° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| OXT | C | CA | HA | 19.9° | 40.0° |
| H | N | CA | HA | 83.3° | 56.1° |
| H2 | N | CA | HA | 156.7° | 180.0° |
| HA | CA | CB | HB3 | 67.8° | 180.0° |
| HB3 | CB | CB2 | HB21 | 136.1° | 180.0° |
| HB3 | CB | CB2 | HB22 | 103.9° | 60.0° |
| HB3 | CB | CB2 | HB23 | 16.1° | 60.1° |
| HB3 | CB | CG | HG2 | 170.1° | 175.0° |
| HB3 | CB | CG | HG3 | 47.6° | 65.0° |
| HB21 | CB2 | HB22 | HB23 | 120.0° | 120.0° |
