LM5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CAN | CAO | doub | 1.38Å | 1.40Å | Aromatic |
| CAN | CAM | sing | 1.38Å | 1.39Å | Aromatic |
| CAO | CAP | sing | 1.38Å | 1.38Å | Aromatic |
| CAP | CAQ | doub | 1.38Å | 1.39Å | Aromatic |
| CAQ | CAR | sing | 1.38Å | 1.39Å | Aromatic |
| CAR | CAM | doub | 1.38Å | 1.41Å | Aromatic |
| CAM | CAL | sing | 1.51Å | 1.40Å | |
| CAL | N1 | sing | 1.46Å | 1.50Å | |
| N1 | C | sing | 1.35Å | 1.34Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | CA | sing | 1.51Å | 1.54Å | |
| CA | N | sing | 1.48Å | 1.47Å | |
| CA | CB | sing | 1.54Å | 1.55Å | |
| N | CD1 | sing | 1.49Å | 1.48Å | |
| CD1 | CAF | sing | 1.53Å | 1.56Å | |
| CD1 | CG | sing | 1.55Å | 1.52Å | |
| CG | OD2 | sing | 1.43Å | 1.45Å | |
| CG | CB | sing | 1.55Å | 1.55Å | |
| CB | OG | sing | 1.43Å | 1.40Å | |
| CAN | H1 | sing | 1.08Å | 1.08Å | |
| CAO | H2 | sing | 1.08Å | 1.08Å | |
| CAP | H3 | sing | 1.08Å | 1.08Å | |
| CAQ | H4 | sing | 1.08Å | 1.08Å | |
| CAR | H5 | sing | 1.08Å | 1.08Å | |
| CAL | H6 | sing | 1.09Å | 1.10Å | |
| CAL | H7 | sing | 1.09Å | 1.10Å | |
| CA | H9 | sing | 1.09Å | 1.10Å | |
| N | H10 | sing | 1.01Å | 1.00Å | |
| CD1 | H12 | sing | 1.09Å | 1.10Å | |
| CAF | H13 | sing | 1.09Å | 1.10Å | |
| CAF | H14 | sing | 1.09Å | 1.10Å | |
| CAF | H15 | sing | 1.09Å | 1.10Å | |
| CG | H16 | sing | 1.09Å | 1.10Å | |
| OD2 | H17 | sing | 0.97Å | 0.95Å | |
| CB | H18 | sing | 1.09Å | 1.10Å | |
| OG | H19 | sing | 0.97Å | 0.95Å | |
| N1 | H20 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CAO | CAN | CAM | 120.5° | 120.0° |
| CAN | CAO | CAP | 120.2° | 120.0° |
| CAO | CAN | H1 | 119.8° | 120.0° |
| CAN | CAO | H2 | 119.9° | 120.0° |
| CAN | CAM | CAR | 118.8° | 120.0° |
| CAN | CAM | CAL | 124.0° | 120.0° |
| CAM | CAN | H1 | 119.7° | 120.0° |
| CAO | CAP | CAQ | 120.0° | 120.0° |
| CAP | CAO | H2 | 119.9° | 120.0° |
| CAO | CAP | H3 | 120.0° | 120.0° |
| CAP | CAQ | CAR | 120.3° | 120.0° |
| CAQ | CAP | H3 | 120.0° | 120.0° |
| CAP | CAQ | H4 | 119.8° | 120.0° |
| CAQ | CAR | CAM | 120.1° | 120.0° |
| CAR | CAQ | H4 | 119.8° | 120.0° |
| CAQ | CAR | H5 | 119.9° | 120.0° |
| CAR | CAM | CAL | 117.1° | 120.0° |
| CAM | CAR | H5 | 119.9° | 120.0° |
| CAM | CAL | N1 | 115.8° | 109.5° |
| CAM | CAL | H6 | 107.9° | 109.5° |
| CAM | CAL | H7 | 107.9° | 109.5° |
| CAL | N1 | C | 124.6° | 120.0° |
| N1 | CAL | H6 | 107.9° | 109.5° |
| N1 | CAL | H7 | 107.9° | 109.5° |
| CAL | N1 | H20 | 117.7° | 119.9° |
| N1 | C | O | 123.2° | 120.0° |
| N1 | C | CA | 117.9° | 120.0° |
| C | N1 | H20 | 117.7° | 120.0° |
| O | C | CA | 118.9° | 120.0° |
| C | CA | N | 110.6° | 109.9° |
| C | CA | CB | 119.6° | 109.9° |
| C | CA | H9 | 106.3° | 109.9° |
| N | CA | CB | 106.4° | 107.1° |
| CA | N | CD1 | 105.5° | 105.8° |
| N | CA | H9 | 107.1° | 110.0° |
| CA | N | H10 | 110.5° | 111.0° |
| CA | CB | CG | 100.7° | 105.1° |
| CA | CB | OG | 110.8° | 110.3° |
| CB | CA | H9 | 106.1° | 110.1° |
| CA | CB | H18 | 109.9° | 110.3° |
| N | CD1 | CAF | 111.5° | 110.7° |
| N | CD1 | CG | 104.3° | 103.3° |
| CD1 | N | H10 | 110.4° | 111.0° |
| N | CD1 | H12 | 109.1° | 110.7° |
| CAF | CD1 | CG | 115.2° | 110.6° |
| CAF | CD1 | H12 | 108.1° | 110.6° |
| CD1 | CAF | H13 | 109.5° | 109.5° |
| CD1 | CAF | H14 | 109.4° | 109.5° |
| CD1 | CAF | H15 | 109.5° | 109.5° |
| CD1 | CG | OD2 | 112.1° | 110.7° |
| CD1 | CG | CB | 97.5° | 102.9° |
| CG | CD1 | H12 | 108.6° | 110.8° |
| CD1 | CG | H16 | 111.2° | 110.7° |
| OD2 | CG | CB | 112.2° | 110.7° |
| OD2 | CG | H16 | 112.2° | 110.7° |
| CG | OD2 | H17 | 109.5° | 114.0° |
| CG | CB | OG | 112.8° | 110.3° |
| CB | CG | H16 | 110.8° | 110.9° |
| CG | CB | H18 | 110.0° | 110.3° |
| OG | CB | H18 | 112.1° | 110.4° |
| CB | OG | H19 | 109.5° | 114.0° |
| H6 | CAL | H7 | 109.5° | 109.4° |
| H13 | CAF | H14 | 109.5° | 109.4° |
| H13 | CAF | H15 | 109.5° | 109.5° |
| H14 | CAF | H15 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CAO | CAN | CAM | H1 | 180.0° | 179.6° |
| CAN | CAO | CAP | H2 | 180.0° | 180.0° |
| CAN | CAO | CAP | CAQ | 0.6° | 0.0° |
| CAO | CAN | CAM | CAR | 0.5° | 0.0° |
| CAO | CAN | CAM | CAL | 177.9° | 180.0° |
| CAN | CAO | CAP | H3 | 179.4° | 179.9° |
| CAM | CAN | CAO | CAP | 0.8° | 0.0° |
| CAN | CAM | CAR | CAQ | 2.0° | 0.1° |
| CAN | CAM | CAR | CAL | 177.5° | 180.0° |
| CAN | CAM | CAL | N1 | 25.3° | 90.0° |
| CAM | CAN | CAO | H2 | 179.2° | 180.0° |
| CAN | CAM | CAR | H5 | 177.9° | 180.0° |
| CAN | CAM | CAL | H6 | 95.6° | 150.0° |
| CAN | CAM | CAL | H7 | 146.2° | 30.1° |
| CAO | CAP | CAQ | H3 | 180.0° | 179.9° |
| CAO | CAP | CAQ | CAR | 0.9° | 0.0° |
| CAP | CAO | CAN | H1 | 179.1° | 179.6° |
| CAO | CAP | CAQ | H4 | 179.1° | 179.9° |
| CAP | CAQ | CAR | H4 | 180.0° | 179.9° |
| CAP | CAQ | CAR | CAM | 2.3° | 0.1° |
| CAQ | CAP | CAO | H2 | 179.4° | 180.0° |
| CAP | CAQ | CAR | H5 | 177.7° | 180.0° |
| CAQ | CAR | CAM | H5 | 180.0° | 179.9° |
| CAQ | CAR | CAM | CAL | 179.6° | 180.0° |
| CAR | CAQ | CAP | H3 | 179.1° | 180.0° |
| CAR | CAM | CAL | N1 | 157.3° | 90.1° |
| CAR | CAM | CAN | H1 | 179.5° | 179.6° |
| CAM | CAR | CAQ | H4 | 177.7° | 179.9° |
| CAR | CAM | CAL | H6 | 81.7° | 30.0° |
| CAR | CAM | CAL | H7 | 36.4° | 149.9° |
| CAM | CAL | N1 | H6 | 120.9° | 120.0° |
| CAM | CAL | N1 | H7 | 120.9° | 120.0° |
| CAM | CAL | N1 | C | 85.7° | 180.0° |
| CAL | CAM | CAN | H1 | 2.2° | 0.4° |
| CAL | CAM | CAR | H5 | 0.4° | 0.1° |
| CAM | CAL | H6 | H7 | 117.1° | 119.9° |
| CAM | CAL | N1 | H20 | 94.3° | 0.0° |
| CAL | N1 | C | H20 | 180.0° | 180.0° |
| CAL | N1 | C | O | 7.0° | 0.0° |
| CAL | N1 | C | CA | 173.2° | 180.0° |
| N1 | CAL | H6 | H7 | 117.1° | 120.0° |
| N1 | C | O | CA | 179.9° | 180.0° |
| N1 | C | CA | N | 147.9° | 161.5° |
| N1 | C | CA | CB | 23.8° | 81.0° |
| C | N1 | CAL | H6 | 35.2° | 60.0° |
| C | N1 | CAL | H7 | 153.3° | 59.9° |
| N1 | C | CA | H9 | 96.1° | 40.3° |
| O | C | CA | N | 31.9° | 18.5° |
| O | C | CA | CB | 156.0° | 99.1° |
| O | C | CA | H9 | 84.0° | 139.7° |
| O | C | N1 | H20 | 173.1° | 180.0° |
| C | CA | N | CB | 131.4° | 119.3° |
| C | CA | N | H9 | 115.4° | 121.1° |
| C | CA | CB | H9 | 120.0° | 121.2° |
| C | CA | N | CD1 | 129.1° | 94.0° |
| C | CA | CB | CG | 153.8° | 118.1° |
| C | CA | CB | OG | 86.6° | 123.0° |
| C | CA | N | H10 | 9.8° | 26.5° |
| C | CA | CB | H18 | 37.8° | 0.8° |
| CA | C | N1 | H20 | 6.8° | 0.0° |
| N | CA | CB | H9 | 113.9° | 119.5° |
| CA | N | CD1 | H10 | 119.4° | 120.5° |
| CA | N | CD1 | CAF | 157.5° | 157.6° |
| CA | N | CD1 | CG | 32.6° | 39.2° |
| N | CA | CB | CG | 27.7° | 1.2° |
| N | CA | CB | OG | 147.3° | 117.7° |
| CA | N | CD1 | H12 | 83.2° | 79.4° |
| N | CA | CB | H18 | 88.3° | 120.1° |
| CB | CA | N | CD1 | 2.3° | 25.3° |
| CA | CB | CG | CD1 | 45.3° | 21.9° |
| CA | CB | CG | OD2 | 72.3° | 96.4° |
| CA | CB | CG | OG | 118.2° | 118.9° |
| CA | CB | CG | H18 | 115.9° | 118.9° |
| CA | CB | OG | H18 | 123.1° | 122.1° |
| CB | CA | N | H10 | 121.6° | 145.8° |
| CA | CB | CG | H16 | 161.4° | 140.4° |
| CA | CB | OG | H19 | 180.0° | 179.9° |
| N | CD1 | CAF | CG | 118.6° | 113.8° |
| N | CD1 | CAF | H12 | 119.9° | 123.1° |
| N | CD1 | CG | H12 | 116.2° | 118.5° |
| N | CD1 | CG | OD2 | 68.9° | 80.9° |
| N | CD1 | CG | CB | 48.8° | 37.4° |
| CD1 | N | CA | H9 | 115.5° | 144.9° |
| N | CD1 | CAF | H13 | 180.0° | 58.5° |
| N | CD1 | CAF | H14 | 60.0° | 178.5° |
| N | CD1 | CAF | H15 | 60.0° | 61.5° |
| N | CD1 | CG | H16 | 164.6° | 155.9° |
| CAF | CD1 | CG | H12 | 121.3° | 123.0° |
| CAF | CD1 | CG | OD2 | 53.6° | 37.5° |
| CAF | CD1 | CG | CB | 171.3° | 155.8° |
| CAF | CD1 | N | H10 | 83.1° | 81.9° |
| CD1 | CAF | H13 | H14 | 120.0° | 120.1° |
| CD1 | CAF | H13 | H15 | 120.0° | 120.0° |
| CD1 | CAF | H14 | H15 | 120.0° | 120.0° |
| CAF | CD1 | CG | H16 | 72.9° | 85.6° |
| CD1 | CG | OD2 | CB | 108.6° | 113.4° |
| CD1 | CG | OD2 | H16 | 126.0° | 123.2° |
| CD1 | CG | CB | H16 | 116.1° | 118.4° |
| CD1 | CG | CB | OG | 163.5° | 140.9° |
| CG | CD1 | N | H10 | 152.0° | 159.7° |
| CG | CD1 | CAF | H13 | 61.4° | 55.3° |
| CG | CD1 | CAF | H14 | 178.6° | 64.7° |
| CG | CD1 | CAF | H15 | 58.6° | 175.3° |
| CD1 | CG | OD2 | H17 | 180.0° | 180.0° |
| CD1 | CG | CB | H18 | 70.6° | 97.0° |
| OD2 | CG | CB | H16 | 126.2° | 123.3° |
| OD2 | CG | CB | OG | 45.8° | 22.5° |
| OD2 | CG | CD1 | H12 | 174.9° | 160.6° |
| OD2 | CG | CB | H18 | 171.8° | 144.7° |
| CG | CB | OG | H18 | 124.8° | 122.1° |
| CG | CB | CA | H9 | 86.2° | 120.7° |
| CB | CG | CD1 | H12 | 67.4° | 81.1° |
| CB | CG | OD2 | H17 | 71.4° | 66.6° |
| CG | CB | OG | H19 | 67.9° | 64.2° |
| OG | CB | CA | H9 | 33.5° | 1.8° |
| OG | CB | CG | H16 | 80.4° | 100.7° |
| H1 | CAN | CAO | H2 | 0.8° | 0.3° |
| H2 | CAO | CAP | H3 | 0.6° | 0.1° |
| H3 | CAP | CAQ | H4 | 0.9° | 0.0° |
| H4 | CAQ | CAR | H5 | 2.3° | 0.0° |
| H6 | CAL | N1 | H20 | 144.8° | 120.0° |
| H7 | CAL | N1 | H20 | 26.7° | 120.0° |
| H9 | CA | N | H10 | 125.2° | 94.6° |
| H9 | CA | CB | H18 | 157.9° | 120.4° |
| H10 | N | CD1 | H12 | 36.2° | 41.1° |
| H12 | CD1 | CAF | H13 | 60.1° | 178.4° |
| H12 | CD1 | CAF | H14 | 59.9° | 58.4° |
| H12 | CD1 | CAF | H15 | 179.8° | 61.6° |
| H12 | CD1 | CG | H16 | 48.4° | 37.4° |
| H13 | CAF | H14 | H15 | 120.0° | 119.9° |
| H16 | CG | OD2 | H17 | 54.0° | 56.8° |
| H16 | CG | CB | H18 | 45.5° | 21.4° |
| H18 | CB | OG | H19 | 56.8° | 57.9° |
