LLY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.44Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.52Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.11Å | |
| CB | CG | sing | 1.53Å | 1.50Å | |
| CB | HB2 | sing | 1.10Å | 1.12Å | |
| CB | HB3 | sing | 1.10Å | 1.12Å | |
| CG | CD | sing | 1.53Å | 1.54Å | |
| CG | HG2 | sing | 1.10Å | 1.11Å | |
| CG | HG3 | sing | 1.10Å | 1.11Å | |
| CD | CE | sing | 1.53Å | 1.51Å | |
| CD | HD2 | sing | 1.10Å | 1.12Å | |
| CD | HD3 | sing | 1.10Å | 1.12Å | |
| CE | NZ | sing | 1.46Å | 1.46Å | |
| CE | HE2 | sing | 1.10Å | 1.11Å | |
| CE | HE3 | sing | 1.10Å | 1.11Å | |
| NZ | CH | sing | 1.46Å | 1.46Å | |
| NZ | HZ | sing | 1.02Å | 1.02Å | |
| CH | C1 | sing | 1.51Å | 1.55Å | |
| CH | C2 | sing | 1.51Å | 1.55Å | |
| CH | HH | sing | 1.10Å | 1.11Å | |
| C1 | O1 | doub | 1.22Å | 1.42Å | |
| C1 | O2 | sing | 1.36Å | 39.33Å | |
| O2 | HO2 | sing | 0.98Å | 0.95Å | |
| C2 | O3 | doub | 1.22Å | 1.42Å | |
| C2 | O4 | sing | 1.36Å | 38.49Å | |
| O4 | HO4 | sing | 0.98Å | 0.95Å | |
| C | O | doub | 1.22Å | 1.23Å | |
| C | OXT | sing | 1.36Å | 1.34Å | |
| OXT | HXT | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 107.8° | 119.1° |
| CA | N | H2 | 112.9° | 119.0° |
| N | CA | CB | 107.7° | 112.5° |
| N | CA | C | 112.2° | 106.4° |
| N | CA | HA | 109.4° | 106.2° |
| H | N | H2 | 112.9° | 120.5° |
| CB | CA | C | 111.1° | 110.2° |
| CB | CA | HA | 110.6° | 112.3° |
| CA | CB | CG | 116.3° | 114.6° |
| CA | CB | HB2 | 109.7° | 109.4° |
| CA | CB | HB3 | 109.7° | 109.5° |
| C | CA | HA | 105.9° | 109.0° |
| CA | C | O | 120.1° | 125.3° |
| CA | C | OXT | 117.1° | 111.9° |
| CG | CB | HB2 | 109.7° | 108.1° |
| CG | CB | HB3 | 109.8° | 109.0° |
| CB | CG | CD | 112.3° | 113.2° |
| CB | CG | HG2 | 111.2° | 107.9° |
| CB | CG | HG3 | 111.2° | 109.6° |
| HB2 | CB | HB3 | 100.4° | 105.9° |
| CD | CG | HG2 | 111.2° | 109.0° |
| CD | CG | HG3 | 111.2° | 110.3° |
| CG | CD | CE | 107.6° | 113.0° |
| CG | CD | HD2 | 112.9° | 110.2° |
| CG | CD | HD3 | 112.9° | 109.2° |
| HG2 | CG | HG3 | 99.2° | 106.5° |
| CE | CD | HD2 | 113.0° | 109.2° |
| CE | CD | HD3 | 113.0° | 108.3° |
| CD | CE | NZ | 116.7° | 111.9° |
| CD | CE | HE2 | 109.6° | 110.0° |
| CD | CE | HE3 | 109.6° | 109.2° |
| HD2 | CD | HD3 | 97.5° | 106.8° |
| NZ | CE | HE2 | 109.6° | 109.2° |
| NZ | CE | HE3 | 109.6° | 109.0° |
| CE | NZ | CH | 114.7° | 110.9° |
| CE | NZ | HZ | 110.3° | 109.1° |
| HE2 | CE | HE3 | 100.6° | 107.4° |
| CH | NZ | HZ | 110.3° | 109.2° |
| NZ | CH | C1 | 111.5° | 107.6° |
| NZ | CH | C2 | 113.0° | 106.7° |
| NZ | CH | HH | 105.6° | 111.8° |
| C1 | CH | C2 | 110.0° | 115.4° |
| C1 | CH | HH | 109.0° | 107.1° |
| CH | C1 | O1 | 110.5° | 126.1° |
| CH | C1 | O2 | 65.0° | 110.9° |
| C2 | CH | HH | 107.4° | 108.3° |
| CH | C2 | O3 | 112.4° | 125.5° |
| CH | C2 | O4 | 96.7° | 112.0° |
| O1 | C1 | O2 | 87.3° | 123.0° |
| C1 | O2 | HO2 | 65.0° | 111.8° |
| O3 | C2 | O4 | 27.7° | 122.5° |
| C2 | O4 | HO4 | 96.7° | 115.0° |
| O | C | OXT | 122.8° | 122.8° |
| C | OXT | HXT | 117.1° | 115.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.3° | 166.3° |
| N | CA | CB | C | 123.2° | 118.6° |
| N | CA | CB | HA | 119.5° | 119.8° |
| N | CA | C | HA | 119.3° | 114.2° |
| N | CA | CB | CG | 137.9° | 63.0° |
| N | CA | CB | HB2 | 12.7° | 58.6° |
| N | CA | CB | HB3 | 96.8° | 174.2° |
| N | CA | C | O | 55.3° | 35.8° |
| N | CA | C | OXT | 122.4° | 146.6° |
| H | N | CA | CB | 180.0° | 167.1° |
| H | N | CA | C | 57.5° | 72.2° |
| H | N | CA | HA | 59.8° | 43.9° |
| H2 | N | CA | CB | 54.7° | 0.6° |
| H2 | N | CA | C | 177.3° | 121.3° |
| H2 | N | CA | HA | 65.5° | 122.6° |
| CB | CA | C | HA | 120.1° | 123.6° |
| CA | CB | CG | HB2 | 125.3° | 122.2° |
| CA | CB | CG | HB3 | 125.3° | 123.1° |
| CA | CB | HB2 | HB3 | 115.5° | 117.9° |
| CA | CB | CG | CD | 158.6° | 177.7° |
| CA | CB | CG | HG2 | 76.2° | 61.6° |
| CA | CB | CG | HG3 | 33.3° | 54.1° |
| CB | CA | C | O | 65.3° | 86.4° |
| CB | CA | C | OXT | 116.9° | 91.2° |
| C | CA | CB | CG | 98.8° | 178.5° |
| C | CA | CB | HB2 | 135.9° | 60.0° |
| C | CA | CB | HB3 | 26.5° | 55.7° |
| CA | C | O | OXT | 177.6° | 177.3° |
| CA | C | OXT | HXT | 179.9° | 177.7° |
| HA | CA | CB | CG | 18.5° | 56.8° |
| HA | CA | CB | HB2 | 106.8° | 178.4° |
| HA | CA | CB | HB3 | 143.8° | 66.0° |
| HA | CA | C | O | 174.6° | 150.0° |
| HA | CA | C | OXT | 3.1° | 32.4° |
| CG | CB | HB2 | HB3 | 115.6° | 116.7° |
| CB | CG | CD | HG2 | 125.2° | 120.1° |
| CB | CG | CD | HG3 | 125.2° | 123.3° |
| CB | CG | HG2 | HG3 | 117.1° | 117.7° |
| CB | CG | CD | CE | 157.9° | 177.5° |
| CB | CG | CD | HD2 | 76.8° | 60.0° |
| CB | CG | CD | HD3 | 32.6° | 57.0° |
| HB2 | CB | CG | CD | 33.3° | 60.1° |
| HB2 | CB | CG | HG2 | 158.5° | 60.6° |
| HB2 | CB | CG | HG3 | 91.9° | 176.3° |
| HB3 | CB | CG | CD | 76.2° | 54.6° |
| HB3 | CB | CG | HG2 | 49.1° | 175.3° |
| HB3 | CB | CG | HG3 | 158.6° | 69.0° |
| CD | CG | HG2 | HG3 | 117.1° | 119.0° |
| CG | CD | CE | HD2 | 125.3° | 123.0° |
| CG | CD | CE | HD3 | 125.3° | 121.0° |
| CG | CD | HD2 | HD3 | 118.8° | 118.4° |
| CG | CD | CE | NZ | 160.1° | 178.4° |
| CG | CD | CE | HE2 | 74.7° | 60.0° |
| CG | CD | CE | HE3 | 34.8° | 57.6° |
| HG2 | CG | CD | CE | 32.7° | 57.4° |
| HG2 | CG | CD | HD2 | 158.0° | 179.9° |
| HG2 | CG | CD | HD3 | 92.6° | 63.1° |
| HG3 | CG | CD | CE | 76.8° | 59.2° |
| HG3 | CG | CD | HD2 | 48.5° | 63.3° |
| HG3 | CG | CD | HD3 | 157.8° | 179.7° |
| CE | CD | HD2 | HD3 | 118.9° | 116.9° |
| CD | CE | NZ | HE2 | 125.2° | 122.1° |
| CD | CE | NZ | HE3 | 125.2° | 120.9° |
| CD | CE | HE2 | HE3 | 115.3° | 118.7° |
| CD | CE | NZ | CH | 165.6° | 179.6° |
| CD | CE | NZ | HZ | 69.1° | 60.1° |
| HD2 | CD | CE | NZ | 34.8° | 58.6° |
| HD2 | CD | CE | HE2 | 160.1° | 63.0° |
| HD2 | CD | CE | HE3 | 90.4° | 179.4° |
| HD3 | CD | CE | NZ | 74.6° | 57.3° |
| HD3 | CD | CE | HE2 | 50.6° | 178.9° |
| HD3 | CD | CE | HE3 | 160.1° | 63.5° |
| NZ | CE | HE2 | HE3 | 115.4° | 118.1° |
| CE | NZ | CH | HZ | 125.3° | 120.3° |
| CE | NZ | CH | C1 | 100.5° | 59.7° |
| CE | NZ | CH | C2 | 134.9° | 175.9° |
| CE | NZ | CH | HH | 17.8° | 57.7° |
| HE2 | CE | NZ | CH | 69.2° | 57.5° |
| HE2 | CE | NZ | HZ | 56.1° | 177.9° |
| HE3 | CE | NZ | CH | 40.3° | 59.5° |
| HE3 | CE | NZ | HZ | 165.6° | 60.8° |
| NZ | CH | C1 | C2 | 126.2° | 119.0° |
| NZ | CH | C1 | HH | 116.2° | 120.4° |
| NZ | CH | C2 | HH | 116.1° | 120.5° |
| NZ | CH | C1 | O1 | 39.0° | 59.6° |
| NZ | CH | C1 | O2 | 37.7° | 122.6° |
| NZ | CH | C2 | O3 | 9.5° | 119.4° |
| NZ | CH | C2 | O4 | 14.1° | 60.1° |
| HZ | NZ | CH | C1 | 134.2° | 180.0° |
| HZ | NZ | CH | C2 | 9.7° | 55.6° |
| HZ | NZ | CH | HH | 107.5° | 62.6° |
| C1 | CH | C2 | HH | 118.5° | 120.0° |
| CH | C1 | O1 | O2 | 62.0° | 177.5° |
| CH | C1 | O2 | HO2 | 180.0° | 177.9° |
| C1 | CH | C2 | O3 | 134.9° | 0.0° |
| C1 | CH | C2 | O4 | 111.3° | 179.6° |
| C2 | CH | C1 | O1 | 165.3° | 59.4° |
| C2 | CH | C1 | O2 | 88.5° | 118.4° |
| CH | C2 | O3 | O4 | 58.9° | 179.5° |
| CH | C2 | O4 | HO4 | 180.0° | 179.6° |
| HH | CH | C1 | O1 | 77.2° | 180.0° |
| HH | CH | C1 | O2 | 154.0° | 2.2° |
| HH | CH | C2 | O3 | 106.6° | 120.0° |
| HH | CH | C2 | O4 | 130.2° | 60.4° |
| O1 | C1 | O2 | HO2 | 65.9° | 0.0° |
| O3 | C2 | O4 | HO4 | 52.8° | 0.0° |
| O | C | OXT | HXT | 2.3° | 0.0° |
