LLT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C4	doub	1.22Å	1.36Å
N3	C4	sing	1.35Å	1.35Å
C4	C5	sing	1.42Å	1.38Å
C5	C7	sing	1.51Å	1.50Å
C5	C6	doub	1.35Å	1.39Å
C7	H7	sing	1.09Å	1.10Å
C7	H7A	sing	1.09Å	1.10Å
C7	H7B	sing	1.09Å	1.10Å
N1	C6	sing	1.37Å	1.34Å
C6	H6	sing	1.08Å	1.08Å
N3	C2	sing	1.35Å	1.35Å
N3	HN3	sing	0.97Å	1.00Å
O2	C2	doub	1.22Å	1.36Å
C2	N1	sing	1.35Å	1.34Å
N1	C1'	sing	1.46Å	1.46Å
O4'	C1'	sing	1.44Å	1.44Å
C1'	C2'	sing	1.55Å	1.53Å
C1'	H1'	sing	1.09Å	1.10Å
O4'	C4'	sing	1.44Å	1.43Å
C4'	C5'	sing	1.53Å	1.52Å
C4'	C3'	sing	1.55Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
O5'	C5'	sing	1.43Å	1.45Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
O5'	HO5'	sing	0.97Å	0.95Å
C2'	C3'	sing	1.54Å	1.53Å
O3'	C3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	C4	N3	120.6°	120.3°
O4	C4	C5	119.4°	120.3°
N3	C4	C5	120.0°	119.4°
C4	N3	C2	119.5°	120.2°
C4	N3	HN3	120.2°	119.9°
C4	C5	C7	120.9°	120.5°
C4	C5	C6	118.7°	119.1°
C7	C5	C6	120.4°	120.4°
C5	C7	H7	109.5°	109.4°
C5	C7	H7A	109.5°	109.4°
C5	C7	H7B	109.5°	109.5°
C5	C6	N1	120.1°	119.7°
C5	C6	H6	120.0°	120.1°
H7	C7	H7A	109.5°	109.5°
H7	C7	H7B	109.4°	109.5°
H7A	C7	H7B	109.5°	109.5°
N1	C6	H6	120.0°	120.2°
C6	N1	C2	119.8°	120.6°
C6	N1	C1'	118.2°	119.7°
C2	N3	HN3	120.2°	119.9°
N3	C2	O2	118.1°	119.5°
N3	C2	N1	121.9°	121.0°
O2	C2	N1	120.0°	119.5°
C2	N1	C1'	122.0°	119.7°
N1	C1'	O4'	111.4°	110.4°
N1	C1'	C2'	111.1°	110.4°
N1	C1'	H1'	105.3°	110.4°
O4'	C1'	C2'	103.6°	104.8°
O4'	C1'	H1'	112.6°	110.4°
C1'	O4'	C4'	111.4°	105.3°
C2'	C1'	H1'	112.9°	110.4°
C1'	C2'	C3'	103.5°	104.1°
C1'	C2'	H2'	111.5°	110.5°
C1'	C2'	H2'A	112.8°	110.6°
O4'	C4'	C5'	109.8°	110.3°
O4'	C4'	C3'	106.3°	104.8°
O4'	C4'	H4'	112.3°	110.4°
C5'	C4'	C3'	112.3°	110.4°
C5'	C4'	H4'	106.4°	110.4°
C4'	C5'	O5'	110.0°	109.5°
C4'	C5'	H5'	109.3°	109.5°
C4'	C5'	H5'A	109.2°	109.4°
C3'	C4'	H4'	109.9°	110.5°
C4'	C3'	C2'	105.3°	104.1°
C4'	C3'	O3'	107.0°	110.5°
C4'	C3'	H3'	114.0°	110.5°
O5'	C5'	H5'	109.3°	109.5°
O5'	C5'	H5'A	109.2°	109.5°
C5'	O5'	HO5'	109.5°	114.0°
H5'	C5'	H5'A	109.9°	109.5°
C2'	C3'	O3'	110.2°	110.6°
C2'	C3'	H3'	110.9°	110.6°
C3'	C2'	H2'	111.5°	110.5°
C3'	C2'	H2'A	112.8°	110.5°
O3'	C3'	H3'	109.3°	110.5°
C3'	O3'	HO3'	109.5°	114.0°
H2'	C2'	H2'A	105.0°	110.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C4	N3	C5	179.8°	179.6°
O4	C4	C5	C7	0.1°	0.1°
O4	C4	C5	C6	179.5°	180.0°
O4	C4	N3	C2	179.0°	179.9°
O4	C4	N3	HN3	1.0°	0.1°
N3	C4	C5	C7	179.8°	179.7°
N3	C4	C5	C6	0.3°	0.3°
C4	N3	C2	HN3	180.0°	180.0°
C4	N3	C2	O2	180.0°	180.0°
C4	N3	C2	N1	1.8°	0.0°
C4	C5	C7	C6	179.5°	179.9°
C4	C5	C7	H7	106.9°	0.1°
C4	C5	C7	H7A	133.0°	120.0°
C4	C5	C7	H7B	13.1°	120.0°
C4	C5	C6	N1	1.3°	0.1°
C4	C5	C6	H6	178.7°	180.0°
C5	C4	N3	C2	1.2°	0.3°
C5	C4	N3	HN3	178.8°	179.7°
C5	C7	H7	H7A	120.0°	119.9°
C5	C7	H7	H7B	120.0°	120.0°
C5	C7	H7A	H7B	120.0°	120.0°
C7	C5	C6	N1	179.2°	180.0°
C7	C5	C6	H6	0.8°	0.0°
C6	C5	C7	H7	72.6°	180.0°
C6	C5	C7	H7A	47.4°	60.1°
C6	C5	C7	H7B	167.4°	60.0°
C5	C6	N1	H6	180.0°	180.0°
C5	C6	N1	C2	0.8°	0.2°
C5	C6	N1	C1'	179.9°	180.0°
H7	C7	H7A	H7B	119.9°	120.1°
C6	N1	C2	N3	0.8°	0.2°
C6	N1	C2	O2	178.9°	179.8°
C6	N1	C2	C1'	179.1°	179.8°
C6	N1	C1'	O4'	19.1°	4.4°
C6	N1	C1'	C2'	95.8°	119.8°
C6	N1	C1'	H1'	141.6°	118.0°
H6	C6	N1	C2	179.3°	179.8°
H6	C6	N1	C1'	0.1°	0.0°
N3	C2	O2	N1	178.2°	180.0°
N3	C2	N1	C1'	178.3°	180.0°
HN3	N3	C2	O2	0.0°	0.0°
HN3	N3	C2	N1	178.2°	180.0°
O2	C2	N1	C1'	0.2°	0.0°
C2	N1	C1'	O4'	161.7°	175.4°
C2	N1	C1'	C2'	83.3°	60.0°
C2	N1	C1'	H1'	39.3°	62.2°
N1	C1'	O4'	C2'	119.5°	118.8°
N1	C1'	O4'	H1'	118.1°	122.3°
N1	C1'	C2'	H1'	118.1°	122.3°
N1	C1'	O4'	C4'	146.8°	159.3°
N1	C1'	C2'	C3'	151.3°	142.8°
N1	C1'	C2'	H2'	31.3°	24.2°
N1	C1'	C2'	H2'A	86.5°	98.5°
O4'	C1'	C2'	H1'	122.1°	118.9°
C1'	O4'	C4'	C5'	133.0°	159.3°
C1'	O4'	C4'	C3'	11.4°	40.5°
C1'	O4'	C4'	H4'	108.8°	78.4°
O4'	C1'	C2'	C3'	31.5°	23.9°
O4'	C1'	C2'	H2'	88.5°	94.6°
O4'	C1'	C2'	H2'A	153.7°	142.6°
C2'	C1'	O4'	C4'	27.3°	40.5°
C1'	C2'	C3'	C4'	25.1°	0.1°
C1'	C2'	C3'	H2'	120.0°	118.6°
C1'	C2'	C3'	H2'A	122.2°	118.7°
C1'	C2'	C3'	O3'	89.9°	118.7°
C1'	C2'	C3'	H3'	148.8°	118.6°
C1'	C2'	H2'	H2'A	122.4°	122.7°
H1'	C1'	O4'	C4'	95.1°	78.3°
H1'	C1'	C2'	C3'	90.6°	95.0°
H1'	C1'	C2'	H2'	149.4°	146.4°
H1'	C1'	C2'	H2'A	31.6°	23.7°
O4'	C4'	C5'	C3'	118.0°	115.3°
O4'	C4'	C5'	H4'	121.8°	122.3°
O4'	C4'	C3'	H4'	121.8°	118.9°
O4'	C4'	C5'	O5'	86.2°	66.5°
O4'	C4'	C5'	H5'	33.9°	53.6°
O4'	C4'	C5'	H5'A	154.1°	173.5°
O4'	C4'	C3'	C2'	9.5°	24.0°
O4'	C4'	C3'	O3'	107.7°	142.8°
O4'	C4'	C3'	H3'	131.3°	94.7°
C5'	C4'	C3'	H4'	118.2°	122.3°
C4'	C5'	O5'	H5'	120.0°	120.1°
C4'	C5'	O5'	H5'A	119.8°	119.9°
C4'	C5'	H5'	H5'A	119.8°	119.9°
C4'	C5'	O5'	HO5'	152.4°	180.0°
C5'	C4'	C3'	C2'	110.5°	142.8°
C5'	C4'	C3'	O3'	132.2°	98.4°
C5'	C4'	C3'	H3'	11.3°	24.1°
C3'	C4'	C5'	O5'	155.9°	178.2°
C3'	C4'	C5'	H5'	84.1°	61.8°
C3'	C4'	C5'	H5'A	36.1°	58.2°
C4'	C3'	C2'	O3'	115.0°	118.7°
C4'	C3'	C2'	H3'	123.7°	118.6°
C4'	C3'	O3'	H3'	123.9°	122.6°
C4'	C3'	O3'	HO3'	50.8°	180.0°
C4'	C3'	C2'	H2'	94.9°	118.6°
C4'	C3'	C2'	H2'A	147.3°	118.7°
H4'	C4'	C5'	O5'	35.7°	55.8°
H4'	C4'	C5'	H5'	155.7°	175.8°
H4'	C4'	C5'	H5'A	84.1°	64.2°
H4'	C4'	C3'	C2'	131.3°	94.8°
H4'	C4'	C3'	O3'	14.0°	23.9°
H4'	C4'	C3'	H3'	106.9°	146.5°
O5'	C5'	H5'	H5'A	119.8°	120.0°
H5'	C5'	O5'	HO5'	87.6°	60.0°
H5'A	C5'	O5'	HO5'	32.6°	60.0°
C2'	C3'	O3'	H3'	122.2°	122.8°
C2'	C3'	O3'	HO3'	63.1°	65.3°
C3'	C2'	H2'	H2'A	122.5°	122.7°
O3'	C3'	C2'	H2'	150.1°	122.7°
O3'	C3'	C2'	H2'A	32.3°	0.0°
H3'	C3'	O3'	HO3'	174.7°	57.4°
H3'	C3'	C2'	H2'	28.9°	0.0°
H3'	C3'	C2'	H2'A	89.0°	122.7°

Definition date:	2009-06-04
Last modified:	2020-05-27
Release status:	REL
Processing site:	RCSB
Derived from:	3HP1