English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

LLQ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	C3	sing	1.43Å	0.00Å
C3	C2	sing	1.53Å	0.00Å
C2	C1	sing	1.53Å	0.00Å
C2	O4	sing	1.43Å	0.00Å
C1	S1	sing	1.81Å	0.00Å
S1	O3	doub	1.42Å	0.00Å
S1	O2	doub	1.42Å	0.00Å
S1	O1	sing	1.52Å	0.00Å
C1	H1	sing	1.09Å	0.00Å
C1	H2	sing	1.09Å	0.00Å
C2	H3	sing	1.09Å	0.00Å
C3	H4	sing	1.09Å	0.00Å
C3	H5	sing	1.09Å	0.00Å
O4	H6	sing	0.97Å	0.00Å
O5	H7	sing	0.97Å	0.00Å
O1	H8	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5	C3	C2	90.0°	109.5°
O5	C3	H4	90.0°	109.5°
O5	C3	H5	90.0°	109.5°
C3	O5	H7	90.0°	114.0°
C3	C2	C1	90.0°	109.5°
C3	C2	O4	90.0°	109.5°
C3	C2	H3	90.0°	109.4°
C2	C3	H4	90.0°	109.4°
C2	C3	H5	90.0°	109.5°
C1	C2	O4	90.0°	109.5°
C2	C1	S1	90.0°	109.5°
C2	C1	H1	90.0°	109.5°
C2	C1	H2	90.0°	109.4°
C1	C2	H3	90.0°	109.5°
O4	C2	H3	90.0°	109.5°
C2	O4	H6	90.0°	114.0°
C1	S1	O3	90.0°	110.6°
C1	S1	O2	90.0°	110.5°
C1	S1	O1	90.0°	104.4°
S1	C1	H1	90.0°	109.5°
S1	C1	H2	90.0°	109.5°
O3	S1	O2	90.0°	121.1°
O3	S1	O1	90.0°	104.3°
O2	S1	O1	90.0°	104.3°
S1	O1	H8	90.0°	114.0°
H1	C1	H2	90.0°	109.5°
H4	C3	H5	90.0°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C3	C2	H4	90.0°	120.0°
O5	C3	C2	H5	90.0°	120.0°
O5	C3	C2	C1	90.0°	175.0°
O5	C3	C2	O4	90.0°	65.0°
O5	C3	C2	H3	90.0°	55.0°
O5	C3	H4	H5	90.0°	120.0°
C3	C2	C1	O4	90.0°	120.0°
C3	C2	C1	H3	90.0°	120.0°
C3	C2	O4	H3	90.0°	120.0°
C3	C2	C1	S1	90.0°	175.0°
C3	C2	C1	H1	90.0°	55.0°
C3	C2	C1	H2	90.0°	65.1°
C2	C3	H4	H5	90.0°	120.0°
C3	C2	O4	H6	90.0°	60.1°
C2	C3	O5	H7	90.0°	180.0°
C1	C2	O4	H3	90.0°	120.0°
C2	C1	S1	H1	90.0°	120.0°
C2	C1	S1	H2	90.0°	120.0°
C2	C1	S1	O3	90.0°	68.4°
C2	C1	S1	O2	90.0°	68.4°
C2	C1	S1	O1	90.0°	180.0°
C2	C1	H1	H2	90.0°	120.0°
C1	C2	C3	H4	90.0°	65.0°
C1	C2	C3	H5	90.0°	55.0°
C1	C2	O4	H6	90.0°	60.0°
O4	C2	C1	S1	90.0°	65.0°
O4	C2	C1	H1	90.0°	175.0°
O4	C2	C1	H2	90.0°	55.0°
O4	C2	C3	H4	90.0°	55.1°
O4	C2	C3	H5	90.0°	175.0°
C1	S1	O3	O2	90.0°	131.6°
C1	S1	O3	O1	90.0°	111.7°
C1	S1	O2	O1	90.0°	111.7°
S1	C1	H1	H2	90.0°	120.0°
S1	C1	C2	H3	90.0°	55.0°
C1	S1	O1	H8	90.0°	180.0°
O3	S1	O2	O1	90.0°	116.7°
O3	S1	C1	H1	90.0°	171.6°
O3	S1	C1	H2	90.0°	51.6°
O3	S1	O1	H8	90.0°	63.9°
O2	S1	C1	H1	90.0°	51.6°
O2	S1	C1	H2	90.0°	171.6°
O2	S1	O1	H8	90.0°	64.0°
O1	S1	C1	H1	90.0°	60.0°
O1	S1	C1	H2	90.0°	60.0°
H1	C1	C2	H3	90.0°	65.0°
H2	C1	C2	H3	90.0°	175.0°
H3	C2	C3	H4	90.0°	175.0°
H3	C2	C3	H5	90.0°	65.0°
H3	C2	O4	H6	90.0°	180.0°
H4	C3	O5	H7	90.0°	60.0°
H5	C3	O5	H7	90.0°	60.0°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon