English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

LKL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N1	sing	1.47Å	1.45Å
N1	C2	sing	1.47Å	1.46Å
C2	C3	sing	1.53Å	1.51Å
C3	O1	sing	1.43Å	1.42Å
N1	C4	sing	1.39Å	1.36Å
C4	N2	doub	1.32Å	1.35Å	Aromatic
N2	C5	sing	1.32Å	1.35Å	Aromatic
C5	C6	doub	1.38Å	1.37Å	Aromatic
C6	C7	sing	1.39Å	1.38Å	Aromatic
C7	C8	doub	1.39Å	1.37Å	Aromatic
C8	F1	sing	1.35Å	1.35Å
C4	C8	sing	1.39Å	1.44Å	Aromatic
C5	H9	sing	1.08Å	1.08Å
C7	H10	sing	1.08Å	1.08Å
C1	H2	sing	1.09Å	1.10Å
C1	H1	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C2	H5	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
O1	H8	sing	0.97Å	0.95Å
C6	CL1	sing	1.74Å	1.73Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N1	C2	116.2°	111.0°
C1	N1	C4	121.0°	111.0°
N1	C1	H2	109.5°	109.5°
N1	C1	H1	109.5°	109.5°
N1	C1	H3	109.5°	109.5°
N1	C2	C3	114.6°	109.5°
C2	N1	C4	122.5°	111.0°
N1	C2	H5	108.2°	109.5°
N1	C2	H4	108.2°	109.5°
C2	C3	O1	110.7°	109.4°
C3	C2	H5	108.1°	109.5°
C3	C2	H4	108.2°	109.5°
C2	C3	H6	109.2°	109.5°
C2	C3	H7	109.2°	109.5°
O1	C3	H6	109.2°	109.5°
O1	C3	H7	109.2°	109.4°
C3	O1	H8	109.5°	114.0°
N1	C4	N2	116.1°	119.7°
N1	C4	C8	123.9°	119.7°
C4	N2	C5	118.9°	121.7°
N2	C4	C8	120.0°	120.6°
N2	C5	C6	122.8°	120.9°
N2	C5	H9	118.6°	119.6°
C5	C6	C7	120.1°	119.4°
C6	C5	H9	118.6°	119.6°
C5	C6	CL1	120.4°	120.3°
C6	C7	C8	118.4°	118.4°
C6	C7	H10	120.8°	120.8°
C7	C6	CL1	119.5°	120.3°
C7	C8	F1	119.0°	120.4°
C7	C8	C4	119.9°	119.0°
C8	C7	H10	120.8°	120.7°
F1	C8	C4	121.1°	120.5°
H2	C1	H1	109.5°	109.4°
H2	C1	H3	109.5°	109.4°
H1	C1	H3	109.5°	109.4°
H5	C2	H4	109.4°	109.5°
H6	C3	H7	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N1	C2	C4	173.5°	123.9°
C1	N1	C2	C3	55.7°	160.1°
C1	N1	C4	N2	5.8°	124.0°
C1	N1	C4	C8	177.0°	56.3°
N1	C1	H2	H1	120.0°	120.0°
N1	C1	H2	H3	120.0°	120.1°
N1	C1	H1	H3	120.0°	120.0°
C1	N1	C2	H5	65.0°	40.1°
C1	N1	C2	H4	176.5°	79.8°
N1	C2	C3	H5	120.8°	120.0°
N1	C2	C3	H4	120.8°	120.0°
N1	C2	C3	O1	164.3°	64.0°
C2	N1	C4	N2	167.5°	0.0°
C2	N1	C4	C8	9.8°	179.7°
C2	N1	C1	H2	180.0°	53.5°
C2	N1	C1	H1	60.0°	173.5°
C2	N1	C1	H3	60.0°	66.5°
N1	C2	H5	H4	117.7°	120.0°
N1	C2	C3	H6	75.5°	176.0°
N1	C2	C3	H7	44.1°	56.0°
C2	C3	O1	H6	120.2°	120.0°
C2	C3	O1	H7	120.2°	120.0°
C3	C2	N1	C4	130.8°	75.9°
C3	C2	H5	H4	117.6°	120.0°
C2	C3	H6	H7	119.4°	120.0°
C2	C3	O1	H8	180.0°	180.0°
O1	C3	C2	H5	43.5°	56.0°
O1	C3	C2	H4	74.9°	176.0°
O1	C3	H6	H7	119.5°	120.0°
N1	C4	N2	C8	177.4°	179.7°
N1	C4	N2	C5	178.0°	180.0°
N1	C4	C8	C7	178.0°	180.0°
N1	C4	C8	F1	2.5°	0.0°
C4	N1	C1	H2	6.4°	177.5°
C4	N1	C1	H1	113.6°	62.5°
C4	N1	C1	H3	126.4°	57.5°
C4	N1	C2	H5	108.5°	164.1°
C4	N1	C2	H4	10.0°	44.1°
C4	N2	C5	C6	0.1°	0.1°
N2	C4	C8	C7	0.8°	0.3°
N2	C4	C8	F1	179.6°	179.8°
C4	N2	C5	H9	179.9°	179.8°
N2	C5	C6	H9	180.0°	179.8°
N2	C5	C6	C7	0.3°	0.2°
C5	N2	C4	C8	0.7°	0.3°
N2	C5	C6	CL1	179.9°	179.8°
C5	C6	C7	CL1	179.8°	179.9°
C5	C6	C7	C8	0.2°	0.2°
C5	C6	C7	H10	179.8°	180.0°
C6	C7	C8	H10	180.0°	179.8°
C6	C7	C8	F1	180.0°	180.0°
C6	C7	C8	C4	0.4°	0.0°
C7	C6	C5	H9	179.7°	180.0°
C7	C8	F1	C4	179.6°	180.0°
C8	C7	C6	CL1	180.0°	179.8°
F1	C8	C7	H10	0.1°	0.2°
C4	C8	C7	H10	179.6°	179.8°
H9	C5	C6	CL1	0.2°	0.0°
H10	C7	C6	CL1	0.0°	0.1°
H2	C1	H1	H3	120.0°	119.9°
H5	C2	C3	H6	163.7°	64.0°
H5	C2	C3	H7	76.7°	176.0°
H4	C2	C3	H6	45.3°	56.0°
H4	C2	C3	H7	164.9°	64.0°
H6	C3	O1	H8	59.8°	60.0°
H7	C3	O1	H8	59.8°	60.0°

250835

PDB entries from 2026-03-18

PDB statistics

PDBj update info

Contact PDBj

numon