LHO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP3	sing	1.61Å	1.40Å
C1	C2	doub	1.34Å	1.24Å
N1	C1	sing	1.37Å	1.19Å
N1	C5	sing	1.35Å	1.22Å
S1	C5	doub	1.71Å	1.48Å
C2	H2	sing	1.08Å	1.08Å
C2	C3	sing	1.46Å	1.21Å
C3	C6	sing	1.40Å	1.21Å	Aromatic
C4	C3	doub	1.41Å	1.23Å	Aromatic
C4	C9	sing	1.39Å	1.22Å	Aromatic
C5	C4	sing	1.47Å	1.24Å
C6	H6	sing	1.08Å	1.08Å
C6	C7	doub	1.38Å	1.21Å	Aromatic
C7	C10	sing	1.51Å	1.30Å
C8	C7	sing	1.39Å	1.21Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
C9	C8	doub	1.38Å	1.21Å	Aromatic
C1'	N1	sing	1.47Å	1.32Å
C1'	C2'	sing	1.54Å	1.45Å
C10	H110	sing	1.09Å	1.10Å
OP2	P	sing	1.61Å	1.25Å
OP2	HOP2	sing	0.97Å	0.95Å
C2'	H22'	sing	1.09Å	1.10Å
C2'	H12'	sing	1.09Å	1.10Å
OP3	HOP3	sing	0.97Å	0.95Å
C3'	C2'	sing	1.55Å	1.38Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	C3'	sing	1.43Å	1.26Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	C3'	sing	1.55Å	1.49Å
C4'	O4'	sing	1.44Å	1.25Å
C4'	C5'	sing	1.53Å	1.36Å
O4'	C1'	sing	1.44Å	1.35Å
C5'	O5'	sing	1.43Å	1.35Å
O5'	P	sing	1.61Å	1.39Å
H1	C1	sing	1.08Å	1.08Å
H9	C9	sing	1.08Å	1.08Å
H1'	C1'	sing	1.09Å	1.10Å
H210	C10	sing	1.09Å	1.10Å
H310	C10	sing	1.09Å	1.10Å
H4'	C4'	sing	1.09Å	1.10Å
H15'	C5'	sing	1.09Å	1.10Å
H25'	C5'	sing	1.09Å	1.10Å
P	OP1	doub	1.48Å	1.72Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP3	P	OP2	115.2°	109.5°
P	OP3	HOP3	109.5°	113.9°
OP3	P	O5'	111.3°	109.4°
OP3	P	OP1	74.5°	109.5°
C2	C1	N1	122.4°	122.4°
C1	C2	H2	121.2°	120.3°
C1	C2	C3	117.6°	119.4°
C2	C1	H1	118.8°	118.9°
C1	N1	C5	120.6°	122.3°
C1	N1	C1'	118.9°	118.8°
N1	C1	H1	118.8°	118.8°
N1	C5	S1	120.2°	120.4°
N1	C5	C4	116.8°	119.2°
C5	N1	C1'	120.3°	118.9°
S1	C5	C4	123.0°	120.4°
H2	C2	C3	121.2°	120.3°
C2	C3	C6	118.9°	122.0°
C2	C3	C4	119.8°	118.4°
C6	C3	C4	121.3°	119.7°
C3	C6	H6	120.1°	120.2°
C3	C6	C7	119.9°	119.6°
C3	C4	C9	118.0°	119.7°
C3	C4	C5	121.9°	118.3°
C9	C4	C5	120.1°	121.9°
C4	C9	C8	120.5°	119.6°
C4	C9	H9	119.8°	120.2°
H6	C6	C7	120.1°	120.2°
C6	C7	C10	119.6°	119.6°
C6	C7	C8	119.4°	120.7°
C10	C7	C8	121.0°	119.7°
C7	C10	H110	109.5°	109.5°
C7	C10	H210	109.4°	109.4°
C7	C10	H310	109.5°	109.5°
C7	C8	H8	119.6°	119.6°
C7	C8	C9	120.9°	120.8°
H8	C8	C9	119.6°	119.6°
C8	C9	H9	119.7°	120.2°
N1	C1'	C2'	108.4°	109.9°
N1	C1'	O4'	112.0°	109.9°
N1	C1'	H1'	109.6°	109.8°
C1'	C2'	H22'	114.7°	110.5°
C1'	C2'	H12'	114.7°	110.5°
C1'	C2'	C3'	94.6°	104.2°
C2'	C1'	O4'	112.5°	107.3°
C2'	C1'	H1'	109.1°	109.9°
H110	C10	H210	109.5°	109.5°
H110	C10	H310	109.4°	109.5°
P	OP2	HOP2	109.5°	114.0°
OP2	P	O5'	107.3°	109.5°
OP2	P	OP1	58.9°	109.5°
H22'	C2'	H12'	103.8°	110.4°
H22'	C2'	C3'	114.7°	110.5°
H12'	C2'	C3'	114.7°	110.6°
C2'	C3'	H3'	108.1°	110.9°
C2'	C3'	O3'	112.0°	110.9°
C2'	C3'	C4'	106.9°	102.1°
H3'	C3'	O3'	110.2°	110.8°
H3'	C3'	C4'	114.9°	110.9°
C3'	O3'	HO3'	109.5°	114.0°
O3'	C3'	C4'	104.7°	110.9°
C3'	C4'	O4'	107.9°	103.5°
C3'	C4'	C5'	111.5°	110.6°
C3'	C4'	H4'	109.4°	110.7°
O4'	C4'	C5'	110.2°	110.6°
C4'	O4'	C1'	105.9°	106.9°
O4'	C4'	H4'	110.8°	110.6°
C4'	C5'	O5'	110.9°	109.5°
C5'	C4'	H4'	107.1°	110.7°
C4'	C5'	H15'	109.0°	109.4°
C4'	C5'	H25'	109.0°	109.4°
O4'	C1'	H1'	105.2°	110.0°
C5'	O5'	P	121.9°	123.0°
O5'	C5'	H15'	109.0°	109.5°
O5'	C5'	H25'	109.0°	109.5°
O5'	P	OP1	165.6°	109.5°
H210	C10	H310	109.5°	109.4°
H15'	C5'	H25'	109.9°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP2	O5'	124.6°	119.9°
OP3	P	OP2	OP1	51.0°	120.0°
OP3	P	OP2	HOP2	50.9°	59.9°
OP3	P	O5'	C5'	175.1°	175.0°
OP3	P	O5'	OP1	111.4°	120.0°
C2	C1	N1	H1	180.0°	179.7°
C2	C1	N1	C5	10.4°	0.1°
C1	C2	H2	C3	180.0°	180.0°
C1	C2	C3	C6	179.2°	180.0°
C1	C2	C3	C4	3.9°	0.0°
C2	C1	N1	C1'	164.4°	180.0°
C1	N1	C5	C1'	174.7°	179.9°
C1	N1	C5	S1	167.7°	180.0°
N1	C1	C2	H2	177.3°	180.0°
N1	C1	C2	C3	2.7°	0.0°
C1	N1	C5	C4	10.8°	0.1°
C1	N1	C1'	C2'	84.2°	65.0°
C1	N1	C1'	O4'	40.5°	52.9°
C1	N1	C1'	H1'	156.9°	174.0°
N1	C5	S1	C4	178.4°	180.0°
N1	C5	C4	C3	4.3°	0.0°
N1	C5	C4	C9	174.4°	179.9°
C5	N1	C1'	C2'	101.0°	114.9°
C5	N1	C1'	O4'	134.3°	127.2°
C5	N1	C1	H1	169.6°	179.8°
C5	N1	C1'	H1'	17.9°	6.1°
S1	C5	C4	C3	174.1°	179.9°
S1	C5	C4	C9	7.1°	0.1°
S1	C5	N1	C1'	17.7°	0.1°
H2	C2	C3	C6	0.8°	0.1°
H2	C2	C3	C4	176.2°	180.0°
H2	C2	C1	H1	2.7°	0.3°
C2	C3	C6	C4	176.9°	180.0°
C2	C3	C4	C9	178.3°	179.9°
C2	C3	C4	C5	3.0°	0.1°
C2	C3	C6	H6	1.3°	0.0°
C2	C3	C6	C7	178.7°	180.0°
C3	C2	C1	H1	177.3°	179.7°
C6	C3	C4	C9	1.4°	0.1°
C6	C3	C4	C5	179.8°	179.9°
C3	C6	H6	C7	180.0°	180.0°
C3	C6	C7	C10	179.1°	180.0°
C3	C6	C7	C8	0.5°	0.0°
C3	C4	C9	C5	178.8°	179.9°
C4	C3	C6	H6	178.2°	180.0°
C4	C3	C6	C7	1.8°	0.0°
C3	C4	C9	C8	1.2°	0.1°
C3	C4	C9	H9	178.8°	180.0°
C4	C9	C8	C7	3.5°	0.0°
C4	C9	C8	H8	176.5°	180.0°
C4	C9	C8	H9	180.0°	179.9°
C5	C4	C9	C8	177.6°	179.9°
C4	C5	N1	C1'	163.8°	180.0°
C5	C4	C9	H9	2.4°	0.1°
H6	C6	C7	C10	0.9°	0.0°
H6	C6	C7	C8	179.5°	180.0°
C6	C7	C10	C8	179.6°	180.0°
C6	C7	C8	H8	176.9°	180.0°
C6	C7	C8	C9	3.1°	0.0°
C6	C7	C10	H110	89.8°	90.0°
C6	C7	C10	H210	150.2°	150.0°
C6	C7	C10	H310	30.2°	30.0°
C10	C7	C8	H8	3.5°	0.0°
C10	C7	C8	C9	176.5°	180.0°
C7	C10	H110	H210	120.0°	120.0°
C7	C10	H110	H310	120.0°	120.0°
C7	C10	H210	H310	120.0°	120.0°
C7	C8	H8	C9	180.0°	180.0°
C8	C7	C10	H110	89.8°	90.0°
C7	C8	C9	H9	176.5°	179.9°
C8	C7	C10	H210	30.2°	30.0°
C8	C7	C10	H310	150.2°	150.0°
H8	C8	C9	H9	3.5°	0.0°
N1	C1'	C2'	O4'	124.4°	119.4°
N1	C1'	C2'	H1'	119.3°	121.0°
N1	C1'	C2'	H22'	81.1°	2.8°
N1	C1'	C2'	H12'	38.9°	119.7°
N1	C1'	C2'	C3'	158.9°	121.4°
N1	C1'	O4'	C4'	146.7°	146.0°
N1	C1'	O4'	H1'	119.0°	121.0°
C1'	N1	C1	H1	15.6°	0.3°
C1'	C2'	H22'	H12'	126.0°	122.6°
C1'	C2'	H22'	C3'	108.1°	114.8°
C1'	C2'	H12'	C3'	108.1°	114.9°
C1'	C2'	C3'	H3'	154.3°	97.3°
C1'	C2'	C3'	O3'	84.1°	139.1°
C1'	C2'	C3'	C4'	30.1°	20.9°
C2'	C1'	O4'	C4'	24.3°	26.5°
C2'	C1'	O4'	H1'	118.6°	119.5°
H110	C10	H210	H310	120.0°	120.0°
OP2	P	OP3	HOP3	43.6°	60.0°
OP2	P	O5'	C5'	57.9°	65.0°
OP2	P	O5'	OP1	15.6°	120.0°
HOP2	OP2	P	O5'	175.5°	60.0°
HOP2	OP2	P	OP1	0.0°	180.0°
H22'	C2'	H12'	C3'	125.9°	122.6°
H22'	C2'	C3'	H3'	85.7°	21.4°
H22'	C2'	C3'	O3'	35.8°	102.2°
H22'	C2'	C3'	C4'	150.0°	139.6°
H22'	C2'	C1'	O4'	154.5°	116.7°
H22'	C2'	C1'	H1'	38.1°	123.7°
H12'	C2'	C3'	H3'	34.4°	143.9°
H12'	C2'	C3'	O3'	155.9°	20.3°
H12'	C2'	C3'	C4'	89.9°	97.8°
H12'	C2'	C1'	O4'	85.5°	120.8°
H12'	C2'	C1'	H1'	158.2°	1.2°
HOP3	OP3	P	O5'	166.1°	180.0°
HOP3	OP3	P	OP1	0.0°	60.0°
C2'	C3'	H3'	O3'	122.6°	123.7°
C2'	C3'	H3'	C4'	119.4°	112.7°
C2'	C3'	O3'	C4'	115.5°	112.7°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	O4'	20.3°	37.0°
C2'	C3'	C4'	C5'	100.9°	155.5°
C3'	C2'	C1'	O4'	34.5°	2.0°
C3'	C2'	C1'	H1'	81.9°	117.6°
C2'	C3'	C4'	H4'	140.9°	81.5°
H3'	C3'	O3'	C4'	124.1°	123.7°
H3'	C3'	O3'	HO3'	59.7°	62.2°
H3'	C3'	C4'	O4'	140.3°	81.2°
H3'	C3'	C4'	C5'	19.1°	37.3°
H3'	C3'	C4'	H4'	99.2°	160.3°
O3'	C3'	C4'	O4'	98.7°	155.2°
O3'	C3'	C4'	C5'	140.1°	86.3°
O3'	C3'	C4'	H4'	21.9°	36.7°
HO3'	O3'	C3'	C4'	64.4°	174.2°
C3'	C4'	O4'	C5'	122.0°	118.5°
C3'	C4'	O4'	H4'	119.7°	118.5°
C3'	C4'	C5'	H4'	119.6°	123.0°
C3'	C4'	O4'	C1'	2.4°	40.1°
C3'	C4'	C5'	O5'	49.8°	175.0°
C3'	C4'	C5'	H15'	169.8°	55.0°
C3'	C4'	C5'	H25'	70.2°	65.0°
O4'	C4'	C5'	H4'	120.5°	122.9°
O4'	C4'	C5'	O5'	70.0°	70.9°
C4'	O4'	C1'	H1'	94.3°	93.0°
O4'	C4'	C5'	H15'	50.0°	169.1°
O4'	C4'	C5'	H25'	170.0°	49.1°
C5'	C4'	O4'	C1'	124.4°	158.6°
C4'	C5'	O5'	H15'	120.0°	120.0°
C4'	C5'	O5'	H25'	120.0°	120.0°
C4'	C5'	O5'	P	174.5°	180.0°
C4'	C5'	H15'	H25'	119.4°	119.9°
C1'	O4'	C4'	H4'	117.3°	78.5°
O5'	C5'	C4'	H4'	169.4°	52.0°
O5'	C5'	H15'	H25'	119.4°	120.1°
C5'	O5'	P	OP1	73.5°	55.0°
P	O5'	C5'	H15'	65.5°	60.0°
P	O5'	C5'	H25'	54.5°	60.0°
H4'	C4'	C5'	H15'	70.5°	68.0°
H4'	C4'	C5'	H25'	49.4°	172.0°

Definition date:	2011-08-19
Last modified:	2012-06-29
Release status:	REL
Processing site:	RCSB
Derived from:	2LHO