LHH
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2 | C2 | doub | 1.22Å | 0.00Å | |
C1 | O2' | sing | 1.43Å | 0.00Å | |
N3 | C2 | sing | 1.33Å | 0.00Å | |
N3 | C4 | doub | 1.33Å | 0.00Å | |
C2 | N1 | sing | 1.35Å | 0.00Å | |
N4 | C4 | sing | 1.38Å | 0.00Å | |
N4 | C7 | sing | 1.35Å | 0.00Å | |
C4 | C5 | sing | 1.41Å | 0.00Å | |
O2' | C2' | sing | 1.43Å | 0.00Å | |
N1 | C1' | sing | 1.46Å | 0.00Å | |
N1 | C6 | sing | 1.36Å | 0.00Å | |
C1' | C2' | sing | 1.55Å | 0.00Å | |
C1' | O4' | sing | 1.44Å | 0.00Å | |
O7 | C7 | doub | 1.21Å | 0.00Å | |
C2' | C3' | sing | 1.55Å | 0.00Å | |
C7 | CM7 | sing | 1.51Å | 0.00Å | |
C5 | C6 | doub | 1.36Å | 0.00Å | |
O4' | C4' | sing | 1.44Å | 0.00Å | |
C3' | C4' | sing | 1.54Å | 0.00Å | |
C3' | O3' | sing | 1.43Å | 0.00Å | |
C4' | C5' | sing | 1.53Å | 0.00Å | |
C5' | O5' | sing | 1.43Å | 0.00Å | |
O5' | P | sing | 1.61Å | 0.00Å | |
P | OP1 | sing | 1.61Å | 0.00Å | |
P | OP2 | doub | 1.48Å | 0.00Å | |
C5 | H1 | sing | 1.08Å | 0.00Å | |
C6 | H2 | sing | 1.08Å | 0.00Å | |
N4 | H3 | sing | 0.97Å | 0.00Å | |
C1 | H4 | sing | 1.09Å | 0.00Å | |
C1 | H5 | sing | 1.09Å | 0.00Å | |
C1 | H6 | sing | 1.09Å | 0.00Å | |
C1' | H7 | sing | 1.09Å | 0.00Å | |
C2' | H8 | sing | 1.09Å | 0.00Å | |
C3' | H9 | sing | 1.09Å | 0.00Å | |
C4' | H10 | sing | 1.09Å | 0.00Å | |
C5' | H11 | sing | 1.09Å | 0.00Å | |
C5' | H12 | sing | 1.09Å | 0.00Å | |
CM7 | H13 | sing | 1.09Å | 0.00Å | |
CM7 | H14 | sing | 1.09Å | 0.00Å | |
CM7 | H15 | sing | 1.09Å | 0.00Å | |
O3' | H16 | sing | 0.97Å | 0.00Å | |
OP1 | H17 | sing | 0.97Å | 0.00Å | |
P | OP3 | sing | 1.61Å | 0.00Å | |
OP3 | H18 | sing | 0.97Å | 0.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2 | C2 | N3 | 90.0° | 119.5° |
O2 | C2 | N1 | 90.0° | 119.4° |
C1 | O2' | C2' | 90.0° | 114.0° |
O2' | C1 | H4 | 90.0° | 109.5° |
O2' | C1 | H5 | 90.0° | 109.5° |
O2' | C1 | H6 | 90.0° | 109.5° |
C2 | N3 | C4 | 90.0° | 120.7° |
N3 | C2 | N1 | 90.0° | 121.1° |
N3 | C4 | N4 | 90.0° | 120.2° |
N3 | C4 | C5 | 90.0° | 119.7° |
C2 | N1 | C1' | 90.0° | 119.9° |
C2 | N1 | C6 | 90.0° | 120.3° |
C4 | N4 | C7 | 90.0° | 120.0° |
N4 | C4 | C5 | 90.0° | 120.2° |
C4 | N4 | H3 | 90.0° | 120.0° |
N4 | C7 | O7 | 90.0° | 120.0° |
N4 | C7 | CM7 | 90.0° | 120.0° |
C7 | N4 | H3 | 90.0° | 120.0° |
C4 | C5 | C6 | 90.0° | 119.0° |
C4 | C5 | H1 | 90.0° | 120.5° |
O2' | C2' | C1' | 90.0° | 111.0° |
O2' | C2' | C3' | 90.0° | 110.9° |
O2' | C2' | H8 | 90.0° | 110.9° |
C1' | N1 | C6 | 90.0° | 119.9° |
N1 | C1' | C2' | 90.0° | 110.6° |
N1 | C1' | O4' | 90.0° | 110.6° |
N1 | C1' | H7 | 90.0° | 110.6° |
N1 | C6 | C5 | 90.0° | 119.3° |
N1 | C6 | H2 | 90.0° | 120.3° |
C2' | C1' | O4' | 90.0° | 103.5° |
C1' | C2' | C3' | 90.0° | 102.1° |
C2' | C1' | H7 | 90.0° | 110.6° |
C1' | C2' | H8 | 90.0° | 110.9° |
C1' | O4' | C4' | 90.0° | 107.0° |
O4' | C1' | H7 | 90.0° | 110.8° |
O7 | C7 | CM7 | 90.0° | 120.0° |
C2' | C3' | C4' | 90.0° | 104.2° |
C2' | C3' | O3' | 90.0° | 110.5° |
C3' | C2' | H8 | 90.0° | 110.9° |
C2' | C3' | H9 | 90.0° | 110.5° |
C7 | CM7 | H13 | 90.0° | 109.5° |
C7 | CM7 | H14 | 90.0° | 109.5° |
C7 | CM7 | H15 | 90.0° | 109.5° |
C6 | C5 | H1 | 90.0° | 120.5° |
C5 | C6 | H2 | 90.0° | 120.4° |
O4' | C4' | C3' | 90.0° | 107.3° |
O4' | C4' | C5' | 90.0° | 109.9° |
O4' | C4' | H10 | 90.0° | 110.0° |
C4' | C3' | O3' | 90.0° | 110.5° |
C3' | C4' | C5' | 90.0° | 109.9° |
C4' | C3' | H9 | 90.0° | 110.5° |
C3' | C4' | H10 | 90.0° | 109.9° |
O3' | C3' | H9 | 90.0° | 110.6° |
C3' | O3' | H16 | 90.0° | 114.0° |
C4' | C5' | O5' | 90.0° | 109.5° |
C5' | C4' | H10 | 90.0° | 109.8° |
C4' | C5' | H11 | 90.0° | 109.5° |
C4' | C5' | H12 | 90.0° | 109.4° |
C5' | O5' | P | 90.0° | 123.0° |
O5' | C5' | H11 | 90.0° | 109.5° |
O5' | C5' | H12 | 90.0° | 109.5° |
O5' | P | OP1 | 90.0° | 109.4° |
O5' | P | OP2 | 90.0° | 109.5° |
O5' | P | OP3 | 90.0° | 109.5° |
OP1 | P | OP2 | 90.0° | 109.5° |
P | OP1 | H17 | 90.0° | 114.0° |
OP1 | P | OP3 | 90.0° | 109.4° |
OP2 | P | OP3 | 90.0° | 109.5° |
H4 | C1 | H5 | 90.0° | 109.5° |
H4 | C1 | H6 | 90.0° | 109.4° |
H5 | C1 | H6 | 90.0° | 109.4° |
H11 | C5' | H12 | 90.0° | 109.5° |
H13 | CM7 | H14 | 90.0° | 109.4° |
H13 | CM7 | H15 | 90.0° | 109.5° |
H14 | CM7 | H15 | 90.0° | 109.4° |
P | OP3 | H18 | 90.0° | 114.1° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2 | C2 | N3 | N1 | 90.0° | 179.9° |
O2 | C2 | N3 | C4 | 90.0° | 180.0° |
O2 | C2 | N1 | C1' | 90.0° | 0.1° |
O2 | C2 | N1 | C6 | 90.0° | 180.0° |
C1 | O2' | C2' | C1' | 90.0° | 150.0° |
C1 | O2' | C2' | C3' | 90.0° | 97.3° |
O2' | C1 | H4 | H5 | 90.0° | 120.0° |
O2' | C1 | H4 | H6 | 90.0° | 120.0° |
O2' | C1 | H5 | H6 | 90.0° | 120.0° |
C1 | O2' | C2' | H8 | 90.0° | 26.3° |
C2 | N3 | C4 | N4 | 90.0° | 179.8° |
C2 | N3 | C4 | C5 | 90.0° | 0.0° |
N3 | C2 | N1 | C1' | 90.0° | 180.0° |
N3 | C2 | N1 | C6 | 90.0° | 0.1° |
C4 | N3 | C2 | N1 | 90.0° | 0.1° |
N3 | C4 | N4 | C5 | 90.0° | 179.7° |
N3 | C4 | N4 | C7 | 90.0° | 0.2° |
N3 | C4 | C5 | C6 | 90.0° | 0.0° |
N3 | C4 | C5 | H1 | 90.0° | 180.0° |
N3 | C4 | N4 | H3 | 90.0° | 179.7° |
C2 | N1 | C1' | C6 | 90.0° | 179.9° |
C2 | N1 | C1' | C2' | 90.0° | 65.1° |
C2 | N1 | C1' | O4' | 90.0° | 49.0° |
C2 | N1 | C6 | C5 | 90.0° | 0.0° |
C2 | N1 | C6 | H2 | 90.0° | 179.9° |
C2 | N1 | C1' | H7 | 90.0° | 172.1° |
C4 | N4 | C7 | H3 | 90.0° | 179.9° |
C4 | N4 | C7 | O7 | 90.0° | 0.1° |
C4 | N4 | C7 | CM7 | 90.0° | 180.0° |
N4 | C4 | C5 | C6 | 90.0° | 179.7° |
N4 | C4 | C5 | H1 | 90.0° | 0.3° |
C7 | N4 | C4 | C5 | 90.0° | 180.0° |
N4 | C7 | O7 | CM7 | 90.0° | 179.9° |
N4 | C7 | CM7 | H13 | 90.0° | 90.0° |
N4 | C7 | CM7 | H14 | 90.0° | 150.0° |
N4 | C7 | CM7 | H15 | 90.0° | 30.1° |
C4 | C5 | C6 | N1 | 90.0° | 0.0° |
C4 | C5 | C6 | H1 | 90.0° | 179.9° |
C4 | C5 | C6 | H2 | 90.0° | 179.9° |
C5 | C4 | N4 | H3 | 90.0° | 0.0° |
O2' | C2' | C1' | N1 | 90.0° | 86.3° |
O2' | C2' | C1' | C3' | 90.0° | 118.2° |
O2' | C2' | C1' | H8 | 90.0° | 123.7° |
O2' | C2' | C1' | O4' | 90.0° | 155.2° |
O2' | C2' | C3' | H8 | 90.0° | 123.6° |
O2' | C2' | C3' | C4' | 90.0° | 139.1° |
O2' | C2' | C3' | O3' | 90.0° | 20.4° |
C2' | O2' | C1 | H4 | 90.0° | 180.0° |
C2' | O2' | C1 | H5 | 90.0° | 59.9° |
C2' | O2' | C1 | H6 | 90.0° | 60.0° |
O2' | C2' | C1' | H7 | 90.0° | 36.5° |
O2' | C2' | C3' | H9 | 90.0° | 102.3° |
N1 | C1' | C2' | O4' | 90.0° | 118.5° |
N1 | C1' | C2' | H7 | 90.0° | 122.8° |
N1 | C1' | O4' | H7 | 90.0° | 123.0° |
N1 | C1' | C2' | C3' | 90.0° | 155.5° |
C1' | N1 | C6 | C5 | 90.0° | 179.9° |
N1 | C1' | O4' | C4' | 90.0° | 158.5° |
C1' | N1 | C6 | H2 | 90.0° | 0.0° |
N1 | C1' | C2' | H8 | 90.0° | 37.4° |
C6 | N1 | C1' | C2' | 90.0° | 115.0° |
C6 | N1 | C1' | O4' | 90.0° | 130.9° |
N1 | C6 | C5 | H2 | 90.0° | 179.9° |
N1 | C6 | C5 | H1 | 90.0° | 179.9° |
C6 | N1 | C1' | H7 | 90.0° | 7.8° |
C2' | C1' | O4' | H7 | 90.0° | 118.5° |
C1' | C2' | C3' | H8 | 90.0° | 118.2° |
C2' | C1' | O4' | C4' | 90.0° | 40.0° |
C1' | C2' | C3' | C4' | 90.0° | 20.9° |
C1' | C2' | C3' | O3' | 90.0° | 97.8° |
C1' | C2' | C3' | H9 | 90.0° | 139.5° |
O4' | C1' | C2' | C3' | 90.0° | 37.0° |
C1' | O4' | C4' | C3' | 90.0° | 26.5° |
C1' | O4' | C4' | C5' | 90.0° | 145.9° |
O4' | C1' | C2' | H8 | 90.0° | 81.1° |
C1' | O4' | C4' | H10 | 90.0° | 93.0° |
O7 | C7 | N4 | H3 | 90.0° | 180.0° |
O7 | C7 | CM7 | H13 | 90.0° | 89.9° |
O7 | C7 | CM7 | H14 | 90.0° | 30.1° |
O7 | C7 | CM7 | H15 | 90.0° | 150.0° |
C2' | C3' | C4' | O4' | 90.0° | 2.0° |
C2' | C3' | C4' | O3' | 90.0° | 118.7° |
C2' | C3' | C4' | H9 | 90.0° | 118.6° |
C2' | C3' | O3' | H9 | 90.0° | 122.6° |
C2' | C3' | C4' | C5' | 90.0° | 121.5° |
C3' | C2' | C1' | H7 | 90.0° | 81.7° |
C2' | C3' | C4' | H10 | 90.0° | 117.6° |
C2' | C3' | O3' | H16 | 90.0° | 180.0° |
CM7 | C7 | N4 | H3 | 90.0° | 0.1° |
C7 | CM7 | H13 | H14 | 90.0° | 120.0° |
C7 | CM7 | H13 | H15 | 90.0° | 120.1° |
C7 | CM7 | H14 | H15 | 90.0° | 120.0° |
O4' | C4' | C3' | C5' | 90.0° | 119.5° |
O4' | C4' | C3' | H10 | 90.0° | 119.6° |
O4' | C4' | C3' | O3' | 90.0° | 120.7° |
O4' | C4' | C5' | H10 | 90.0° | 121.1° |
O4' | C4' | C5' | O5' | 90.0° | 67.1° |
C4' | O4' | C1' | H7 | 90.0° | 78.5° |
O4' | C4' | C3' | H9 | 90.0° | 116.6° |
O4' | C4' | C5' | H11 | 90.0° | 172.9° |
O4' | C4' | C5' | H12 | 90.0° | 52.8° |
C4' | C3' | O3' | H9 | 90.0° | 122.6° |
C3' | C4' | C5' | H10 | 90.0° | 121.0° |
C3' | C4' | C5' | O5' | 90.0° | 175.0° |
C4' | C3' | C2' | H8 | 90.0° | 97.3° |
C3' | C4' | C5' | H11 | 90.0° | 55.0° |
C3' | C4' | C5' | H12 | 90.0° | 65.0° |
C4' | C3' | O3' | H16 | 90.0° | 65.2° |
O3' | C3' | C4' | C5' | 90.0° | 119.9° |
O3' | C3' | C2' | H8 | 90.0° | 144.0° |
O3' | C3' | C4' | H10 | 90.0° | 1.1° |
C4' | C5' | O5' | H11 | 90.0° | 120.0° |
C4' | C5' | O5' | H12 | 90.0° | 119.9° |
C4' | C5' | O5' | P | 90.0° | 180.0° |
C5' | C4' | C3' | H9 | 90.0° | 2.8° |
C4' | C5' | H11 | H12 | 90.0° | 119.9° |
C5' | O5' | P | OP1 | 90.0° | 65.0° |
C5' | O5' | P | OP2 | 90.0° | 55.0° |
O5' | C5' | C4' | H10 | 90.0° | 54.0° |
O5' | C5' | H11 | H12 | 90.0° | 120.1° |
C5' | O5' | P | OP3 | 90.0° | 175.0° |
O5' | P | OP1 | OP2 | 90.0° | 120.0° |
O5' | P | OP1 | OP3 | 90.0° | 120.0° |
O5' | P | OP2 | OP3 | 90.0° | 120.1° |
P | O5' | C5' | H11 | 90.0° | 60.0° |
P | O5' | C5' | H12 | 90.0° | 60.1° |
O5' | P | OP1 | H17 | 90.0° | 60.1° |
O5' | P | OP3 | H18 | 90.0° | 180.0° |
OP1 | P | OP2 | OP3 | 90.0° | 120.0° |
OP1 | P | OP3 | H18 | 90.0° | 60.0° |
OP2 | P | OP1 | H17 | 90.0° | 180.0° |
OP2 | P | OP3 | H18 | 90.0° | 60.0° |
H1 | C5 | C6 | H2 | 90.0° | 0.0° |
H4 | C1 | H5 | H6 | 90.0° | 120.0° |
H7 | C1' | C2' | H8 | 90.0° | 160.2° |
H8 | C2' | C3' | H9 | 90.0° | 21.3° |
H9 | C3' | C4' | H10 | 90.0° | 123.8° |
H9 | C3' | O3' | H16 | 90.0° | 57.4° |
H10 | C4' | C5' | H11 | 90.0° | 66.0° |
H10 | C4' | C5' | H12 | 90.0° | 174.0° |
H13 | CM7 | H14 | H15 | 90.0° | 119.9° |
H17 | OP1 | P | OP3 | 90.0° | 60.0° |