LGP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP1	doub	1.48Å	1.48Å
P	OP2	sing	1.61Å	1.48Å
P	OP3	sing	1.61Å	1.62Å
P	O5'	sing	1.61Å	1.62Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.44Å
C5'	C4'	sing	1.53Å	1.54Å
C5'	H5'	sing	1.09Å	1.09Å
C5'	H5''	sing	1.09Å	1.09Å
C4'	O4'	sing	1.43Å	1.43Å
C4'	C3'	sing	1.53Å	1.54Å
C4'	H4'	sing	1.09Å	1.09Å
O4'	C1'	sing	1.43Å	1.43Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'1	sing	1.09Å	1.09Å
C3'	H3'2	sing	1.09Å	1.11Å
O3'	HO3'	sing	0.97Å	0.95Å
C1'	N9	sing	1.46Å	1.47Å
C1'	H1'1	sing	1.09Å	1.08Å
C1'	H1'2	sing	1.09Å	1.09Å
N9	C8	sing	1.36Å	1.35Å	Aromatic
N9	C4	sing	1.37Å	1.38Å	Aromatic
C8	N7	doub	1.30Å	1.29Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
N7	C5	sing	1.35Å	1.40Å	Aromatic
C5	C6	sing	1.41Å	1.42Å
C5	C4	doub	1.40Å	1.39Å	Aromatic
C6	O6	doub	1.22Å	1.23Å
C6	N1	sing	1.35Å	1.39Å
N1	C2	sing	1.36Å	1.38Å
N1	HN1	sing	0.97Å	1.01Å
C2	N2	sing	1.37Å	1.33Å
C2	N3	doub	1.31Å	1.33Å
N2	HN21	sing	0.97Å	1.01Å
N2	HN22	sing	0.97Å	1.01Å
N3	C4	sing	1.34Å	1.35Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	119.7°	109.4°
OP1	P	OP3	108.0°	109.5°
OP1	P	O5'	107.9°	109.5°
OP2	P	OP3	107.9°	109.5°
OP2	P	O5'	108.4°	109.5°
P	OP2	HOP2	119.6°	106.8°
OP3	P	O5'	103.8°	109.5°
P	OP3	HOP3	108.1°	106.8°
P	O5'	C5'	121.2°	106.8°
O5'	C5'	C4'	112.7°	109.5°
O5'	C5'	H5'	108.6°	109.4°
O5'	C5'	H5''	109.1°	109.5°
C4'	C5'	H5'	108.7°	109.5°
C4'	C5'	H5''	109.0°	109.5°
C5'	C4'	O4'	110.5°	109.5°
C5'	C4'	C3'	111.3°	109.5°
C5'	C4'	H4'	108.4°	109.5°
H5'	C5'	H5''	108.7°	109.5°
O4'	C4'	C3'	111.4°	109.5°
O4'	C4'	H4'	107.4°	109.4°
C4'	O4'	C1'	110.2°	106.8°
C3'	C4'	H4'	107.7°	109.5°
C4'	C3'	O3'	110.6°	109.5°
C4'	C3'	H3'1	109.4°	109.5°
C4'	C3'	H3'2	109.2°	109.5°
O4'	C1'	N9	112.1°	109.5°
O4'	C1'	H1'1	108.4°	109.4°
O4'	C1'	H1'2	109.5°	109.5°
O3'	C3'	H3'1	109.2°	109.4°
O3'	C3'	H3'2	108.7°	109.5°
C3'	O3'	HO3'	110.6°	106.8°
H3'1	C3'	H3'2	109.7°	109.5°
N9	C1'	H1'1	109.0°	109.4°
N9	C1'	H1'2	108.9°	109.5°
C1'	N9	C8	129.4°	126.3°
C1'	N9	C4	126.6°	126.3°
H1'1	C1'	H1'2	108.9°	109.5°
C8	N9	C4	103.9°	107.5°
N9	C8	N7	117.8°	109.8°
N9	C8	H8	121.0°	125.1°
N9	C4	C5	106.1°	106.2°
N9	C4	N3	126.0°	134.2°
N7	C8	H8	121.3°	125.1°
C8	N7	C5	101.6°	109.3°
N7	C5	C6	130.0°	134.1°
N7	C5	C4	110.6°	107.3°
C6	C5	C4	119.4°	118.6°
C5	C6	O6	128.5°	120.9°
C5	C6	N1	111.6°	118.4°
C5	C4	N3	127.9°	119.7°
O6	C6	N1	119.9°	120.8°
C6	N1	C2	125.2°	120.3°
C6	N1	HN1	115.7°	119.8°
C2	N1	HN1	119.0°	119.9°
N1	C2	N2	116.3°	119.0°
N1	C2	N3	123.7°	121.9°
N2	C2	N3	120.0°	119.1°
C2	N2	HN21	119.7°	120.0°
C2	N2	HN22	120.1°	120.0°
C2	N3	C4	112.2°	121.1°
HN21	N2	HN22	120.2°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	OP3	124.0°	120.0°
OP1	P	OP2	O5'	124.2°	120.0°
OP1	P	OP3	O5'	114.4°	120.0°
OP1	P	OP2	HOP2	180.0°	60.0°
OP1	P	OP3	HOP3	180.0°	180.0°
OP1	P	O5'	C5'	126.6°	60.0°
OP2	P	OP3	O5'	114.8°	120.0°
OP2	P	OP3	HOP3	49.3°	60.1°
OP2	P	O5'	C5'	4.4°	180.0°
OP3	P	OP2	HOP2	56.0°	59.9°
OP3	P	O5'	C5'	118.9°	60.0°
O5'	P	OP2	HOP2	55.8°	180.0°
O5'	P	OP3	HOP3	65.5°	59.9°
P	O5'	C5'	C4'	145.9°	180.0°
P	O5'	C5'	H5'	93.6°	60.0°
P	O5'	C5'	H5''	24.7°	60.0°
O5'	C5'	C4'	H5'	120.5°	120.0°
O5'	C5'	C4'	H5''	121.2°	120.0°
O5'	C5'	H5'	H5''	118.5°	120.0°
O5'	C5'	C4'	O4'	13.4°	60.0°
O5'	C5'	C4'	C3'	110.9°	180.0°
O5'	C5'	C4'	H4'	130.9°	60.0°
C4'	C5'	H5'	H5''	118.5°	120.0°
C5'	C4'	O4'	C3'	124.2°	120.0°
C5'	C4'	O4'	H4'	118.1°	120.0°
C5'	C4'	C3'	H4'	118.7°	120.0°
C5'	C4'	O4'	C1'	68.8°	150.0°
C5'	C4'	C3'	O3'	22.9°	60.0°
C5'	C4'	C3'	H3'1	97.4°	60.0°
C5'	C4'	C3'	H3'2	142.5°	180.0°
H5'	C5'	C4'	O4'	107.1°	179.9°
H5'	C5'	C4'	C3'	128.7°	60.0°
H5'	C5'	C4'	H4'	10.4°	60.0°
H5''	C5'	C4'	O4'	134.6°	60.1°
H5''	C5'	C4'	C3'	10.4°	60.0°
H5''	C5'	C4'	H4'	107.9°	180.0°
O4'	C4'	C3'	H4'	117.6°	120.0°
O4'	C4'	C3'	O3'	146.7°	60.0°
O4'	C4'	C3'	H3'1	26.4°	180.0°
O4'	C4'	C3'	H3'2	93.8°	60.0°
C4'	O4'	C1'	N9	171.4°	180.0°
C4'	O4'	C1'	H1'1	68.3°	60.1°
C4'	O4'	C1'	H1'2	50.4°	59.9°
C3'	C4'	O4'	C1'	167.0°	89.9°
C4'	C3'	O3'	H3'1	120.5°	120.0°
C4'	C3'	O3'	H3'2	119.9°	120.0°
C4'	C3'	H3'1	H3'2	119.8°	120.0°
C4'	C3'	O3'	HO3'	180.0°	180.0°
H4'	C4'	O4'	C1'	49.3°	30.1°
H4'	C4'	C3'	O3'	95.7°	180.0°
H4'	C4'	C3'	H3'1	143.9°	60.0°
H4'	C4'	C3'	H3'2	23.8°	60.0°
O4'	C1'	N9	H1'1	120.0°	119.9°
O4'	C1'	N9	H1'2	121.3°	120.1°
O4'	C1'	H1'1	H1'2	119.0°	120.0°
O4'	C1'	N9	C8	63.2°	0.1°
O4'	C1'	N9	C4	118.3°	180.0°
O3'	C3'	H3'1	H3'2	119.0°	120.0°
H3'1	C3'	O3'	HO3'	59.5°	60.0°
H3'2	C3'	O3'	HO3'	60.2°	60.0°
N9	C1'	H1'1	H1'2	118.7°	120.0°
C1'	N9	C8	C4	178.8°	179.9°
C1'	N9	C8	N7	178.6°	179.9°
C1'	N9	C8	H8	2.6°	0.1°
C1'	N9	C4	C5	178.8°	179.9°
C1'	N9	C4	N3	1.4°	0.1°
H1'1	C1'	N9	C8	56.9°	120.1°
H1'1	C1'	N9	C4	121.7°	60.1°
H1'2	C1'	N9	C8	175.5°	119.9°
H1'2	C1'	N9	C4	3.0°	59.9°
N9	C8	N7	H8	178.8°	180.0°
N9	C8	N7	C5	0.2°	0.0°
C8	N9	C4	C5	0.1°	0.0°
C8	N9	C4	N3	179.8°	180.0°
C4	N9	C8	N7	0.2°	0.0°
C4	N9	C8	H8	178.6°	180.0°
N9	C4	C5	N7	0.0°	0.0°
N9	C4	C5	C6	179.8°	180.0°
N9	C4	C5	N3	179.8°	180.0°
N9	C4	N3	C2	179.6°	179.9°
C8	N7	C5	C6	179.7°	180.0°
C8	N7	C5	C4	0.1°	0.0°
H8	C8	N7	C5	178.6°	180.0°
N7	C5	C6	C4	179.8°	180.0°
N7	C5	C6	O6	0.3°	0.0°
N7	C5	C6	N1	179.6°	179.7°
N7	C5	C4	N3	179.9°	179.9°
C5	C6	O6	N1	179.9°	179.7°
C5	C6	N1	C2	0.1°	0.5°
C5	C6	N1	HN1	179.4°	180.0°
C6	C5	C4	N3	0.0°	0.0°
C4	C5	C6	O6	179.9°	180.0°
C4	C5	C6	N1	0.2°	0.2°
C5	C4	N3	C2	0.3°	0.1°
O6	C6	N1	C2	179.9°	179.7°
O6	C6	N1	HN1	0.5°	0.2°
C6	N1	C2	HN1	179.6°	179.5°
C6	N1	C2	N2	179.6°	179.8°
C6	N1	C2	N3	0.1°	0.6°
N1	C2	N2	N3	179.7°	179.6°
N1	C2	N2	HN21	179.9°	179.7°
N1	C2	N2	HN22	1.1°	0.6°
N1	C2	N3	C4	0.3°	0.4°
HN1	N1	C2	N2	0.1°	0.3°
HN1	N1	C2	N3	179.6°	179.9°
C2	N2	HN21	HN22	178.8°	179.6°
N2	C2	N3	C4	179.4°	180.0°
N3	C2	N2	HN21	0.2°	0.1°
N3	C2	N2	HN22	178.6°	179.7°

Definition date:	1999-07-08
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	1AC9