Obsolete: LG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.62Å | 100.66Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
P | OP1 | doub | 1.50Å | 1.49Å | |
P | OP2 | sing | 1.62Å | 1.46Å | |
P | O5' | sing | 1.62Å | 1.60Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.41Å | |
C5' | C4' | sing | 1.52Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.45Å | 1.45Å | |
C4' | C3' | sing | 1.53Å | 1.54Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.45Å | |
C3' | C2' | sing | 1.52Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.41Å | 1.43Å | |
C2' | C1' | sing | 1.52Å | 1.53Å | |
C2' | H2' | sing | 1.10Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.46Å | |
C1' | H1' | sing | 1.10Å | 1.11Å | |
N9 | C8 | sing | 1.37Å | 1.38Å | Aromatic |
N9 | C4 | sing | 1.36Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.32Å | 1.30Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.25Å | |
C6 | C5 | sing | 1.44Å | 1.42Å | |
C6 | N1 | sing | 1.40Å | 1.40Å | |
C5 | C4 | doub | 1.37Å | 1.39Å | Aromatic |
N1 | C2 | sing | 1.42Å | 1.38Å | |
N1 | H1 | sing | 1.02Å | 1.02Å | |
C2 | N2 | sing | 1.37Å | 1.35Å | |
C2 | N3 | doub | 1.32Å | 1.33Å | |
N2 | H21 | sing | 0.99Å | 1.02Å | |
N2 | H22 | sing | 0.99Å | 1.02Å | |
N3 | C4 | sing | 1.35Å | 1.36Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 52.1° | 118.9° |
OP3 | P | OP1 | 52.1° | 115.3° |
OP3 | P | OP2 | 72.1° | 103.3° |
OP3 | P | O5' | 110.6° | 103.7° |
OP1 | P | OP2 | 121.8° | 115.0° |
OP1 | P | O5' | 105.5° | 115.0° |
OP2 | P | O5' | 108.5° | 102.9° |
P | OP2 | HOP2 | 72.1° | 119.0° |
P | O5' | C5' | 118.5° | 118.5° |
O5' | C5' | C4' | 111.0° | 108.7° |
O5' | C5' | H5' | 111.6° | 109.2° |
O5' | C5' | H5'' | 111.6° | 109.1° |
C4' | C5' | H5' | 111.7° | 110.1° |
C4' | C5' | H5'' | 111.7° | 110.1° |
C5' | C4' | O4' | 107.7° | 108.4° |
C5' | C4' | C3' | 117.4° | 112.9° |
C5' | C4' | H4' | 103.6° | 109.3° |
H5' | C5' | H5'' | 98.8° | 109.6° |
O4' | C4' | C3' | 103.9° | 106.4° |
O4' | C4' | H4' | 117.2° | 107.5° |
C4' | O4' | C1' | 108.0° | 108.8° |
C3' | C4' | H4' | 107.5° | 112.0° |
C4' | C3' | O3' | 113.4° | 108.8° |
C4' | C3' | C2' | 98.1° | 102.3° |
C4' | C3' | H3' | 115.3° | 114.5° |
O4' | C1' | C2' | 107.0° | 106.1° |
O4' | C1' | N9 | 108.9° | 109.8° |
O4' | C1' | H1' | 113.0° | 108.9° |
O3' | C3' | C2' | 112.3° | 109.5° |
O3' | C3' | H3' | 101.9° | 107.7° |
C3' | O3' | HO3' | 113.4° | 106.4° |
C2' | C3' | H3' | 116.4° | 113.9° |
C3' | C2' | O2' | 113.4° | 113.1° |
C3' | C2' | C1' | 99.9° | 101.5° |
C3' | C2' | H2' | 113.5° | 110.3° |
O2' | C2' | C1' | 110.3° | 111.9° |
O2' | C2' | H2' | 103.6° | 108.9° |
C2' | O2' | HO2' | 113.4° | 107.2° |
C1' | C2' | H2' | 116.5° | 111.0° |
C2' | C1' | N9 | 113.8° | 114.1° |
C2' | C1' | H1' | 108.0° | 112.6° |
N9 | C1' | H1' | 106.2° | 105.3° |
C1' | N9 | C8 | 128.9° | 126.0° |
C1' | N9 | C4 | 125.0° | 127.3° |
C8 | N9 | C4 | 106.1° | 106.7° |
N9 | C8 | N7 | 113.5° | 112.4° |
N9 | C8 | H8 | 125.7° | 122.0° |
N9 | C4 | C5 | 105.6° | 104.9° |
N9 | C4 | N3 | 125.3° | 126.0° |
N7 | C8 | H8 | 120.8° | 125.6° |
C8 | N7 | C5 | 104.6° | 103.9° |
N7 | C5 | C6 | 131.3° | 128.7° |
N7 | C5 | C4 | 110.1° | 112.1° |
O6 | C6 | C5 | 129.3° | 123.8° |
O6 | C6 | N1 | 118.7° | 125.4° |
C5 | C6 | N1 | 111.9° | 110.8° |
C6 | C5 | C4 | 118.6° | 119.2° |
C6 | N1 | C2 | 125.0° | 125.3° |
C6 | N1 | H1 | 118.2° | 117.4° |
C5 | C4 | N3 | 129.0° | 129.1° |
C2 | N1 | H1 | 116.8° | 117.4° |
N1 | C2 | N2 | 116.2° | 115.3° |
N1 | C2 | N3 | 123.9° | 122.6° |
N2 | C2 | N3 | 119.8° | 122.0° |
C2 | N2 | H21 | 116.2° | 118.3° |
C2 | N2 | H22 | 109.7° | 118.3° |
C2 | N3 | C4 | 111.6° | 113.0° |
H21 | N2 | H22 | 109.8° | 123.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 19.8° | 120.1° |
OP3 | P | OP1 | O5' | 104.3° | 120.6° |
OP3 | P | OP2 | O5' | 106.4° | 107.7° |
OP3 | P | OP2 | HOP2 | 180.0° | 78.4° |
OP3 | P | O5' | C5' | 98.7° | 53.2° |
HOP3 | OP3 | P | OP1 | 180.0° | 48.8° |
HOP3 | OP3 | P | OP2 | 17.6° | 77.5° |
HOP3 | OP3 | P | O5' | 86.0° | 175.4° |
OP1 | P | OP2 | O5' | 122.7° | 125.8° |
OP1 | P | OP2 | HOP2 | 163.7° | 48.1° |
OP1 | P | O5' | C5' | 43.9° | 180.0° |
OP2 | P | O5' | C5' | 176.0° | 54.2° |
O5' | P | OP2 | HOP2 | 73.6° | 173.9° |
P | O5' | C5' | C4' | 175.0° | 180.0° |
P | O5' | C5' | H5' | 59.7° | 59.9° |
P | O5' | C5' | H5'' | 49.7° | 59.9° |
O5' | C5' | C4' | H5' | 125.2° | 119.5° |
O5' | C5' | C4' | H5'' | 125.2° | 119.5° |
O5' | C5' | H5' | H5'' | 117.5° | 119.5° |
O5' | C5' | C4' | O4' | 73.9° | 62.8° |
O5' | C5' | C4' | C3' | 42.9° | 179.6° |
O5' | C5' | C4' | H4' | 161.2° | 54.1° |
C4' | C5' | H5' | H5'' | 117.6° | 121.3° |
C5' | C4' | O4' | C3' | 125.3° | 121.7° |
C5' | C4' | O4' | H4' | 116.3° | 118.1° |
C5' | C4' | C3' | H4' | 116.2° | 124.0° |
C5' | C4' | O4' | C1' | 148.5° | 114.2° |
C5' | C4' | C3' | O3' | 79.5° | 154.1° |
C5' | C4' | C3' | C2' | 161.9° | 90.1° |
C5' | C4' | C3' | H3' | 37.5° | 33.6° |
H5' | C5' | C4' | O4' | 51.3° | 177.7° |
H5' | C5' | C4' | C3' | 168.1° | 60.1° |
H5' | C5' | C4' | H4' | 73.6° | 65.4° |
H5'' | C5' | C4' | O4' | 160.9° | 56.7° |
H5'' | C5' | C4' | C3' | 82.3° | 60.9° |
H5'' | C5' | C4' | H4' | 36.0° | 173.6° |
O4' | C4' | C3' | H4' | 124.9° | 117.2° |
O4' | C4' | C3' | O3' | 161.7° | 87.1° |
O4' | C4' | C3' | C2' | 43.0° | 28.6° |
O4' | C4' | C3' | H3' | 81.3° | 152.3° |
C4' | O4' | C1' | C2' | 6.7° | 16.9° |
C4' | O4' | C1' | N9 | 116.8° | 140.6° |
C4' | O4' | C1' | H1' | 125.5° | 104.5° |
C3' | C4' | O4' | C1' | 23.2° | 7.5° |
C4' | C3' | O3' | C2' | 110.1° | 111.0° |
C4' | C3' | O3' | H3' | 124.6° | 124.6° |
C4' | C3' | C2' | H3' | 123.6° | 124.1° |
C4' | C3' | O3' | HO3' | 180.0° | 79.6° |
C4' | C3' | C2' | O2' | 72.2° | 157.5° |
C4' | C3' | C2' | C1' | 45.2° | 37.4° |
C4' | C3' | C2' | H2' | 169.8° | 80.3° |
H4' | C4' | O4' | C1' | 95.2° | 127.7° |
H4' | C4' | C3' | O3' | 36.7° | 30.1° |
H4' | C4' | C3' | C2' | 81.9° | 145.9° |
H4' | C4' | C3' | H3' | 153.7° | 90.4° |
O4' | C1' | C2' | C3' | 33.9° | 34.2° |
O4' | C1' | C2' | O2' | 85.8° | 155.1° |
O4' | C1' | C2' | N9 | 120.3° | 121.0° |
O4' | C1' | C2' | H1' | 122.0° | 119.1° |
O4' | C1' | C2' | H2' | 156.5° | 83.0° |
O4' | C1' | N9 | H1' | 122.0° | 117.1° |
O4' | C1' | N9 | C8 | 17.6° | 32.9° |
O4' | C1' | N9 | C4 | 163.7° | 147.1° |
O3' | C3' | C2' | H3' | 116.9° | 120.7° |
O3' | C3' | C2' | O2' | 47.3° | 42.3° |
O3' | C3' | C2' | C1' | 164.7° | 77.8° |
O3' | C3' | C2' | H2' | 70.7° | 164.4° |
C2' | C3' | O3' | HO3' | 69.9° | 169.3° |
C3' | C2' | O2' | C1' | 111.1° | 113.9° |
C3' | C2' | O2' | H2' | 123.5° | 123.0° |
C3' | C2' | C1' | H2' | 122.6° | 117.2° |
C3' | C2' | O2' | HO2' | 180.0° | 117.9° |
C3' | C2' | C1' | N9 | 86.5° | 155.2° |
C3' | C2' | C1' | H1' | 155.9° | 84.9° |
H3' | C3' | O3' | HO3' | 55.4° | 45.0° |
H3' | C3' | C2' | O2' | 164.2° | 78.4° |
H3' | C3' | C2' | C1' | 78.4° | 161.5° |
H3' | C3' | C2' | H2' | 46.3° | 43.8° |
O2' | C2' | C1' | H2' | 117.7° | 121.9° |
O2' | C2' | C1' | N9 | 153.8° | 83.9° |
O2' | C2' | C1' | H1' | 36.2° | 36.0° |
C1' | C2' | O2' | HO2' | 68.9° | 3.9° |
C2' | C1' | N9 | H1' | 118.7° | 123.9° |
C2' | C1' | N9 | C8 | 101.7° | 86.1° |
C2' | C1' | N9 | C4 | 76.9° | 93.9° |
H2' | C2' | O2' | HO2' | 56.5° | 119.2° |
H2' | C2' | C1' | N9 | 36.1° | 38.0° |
H2' | C2' | C1' | H1' | 81.5° | 157.9° |
C1' | N9 | C8 | C4 | 178.8° | 180.0° |
C1' | N9 | C8 | N7 | 179.8° | 180.0° |
C1' | N9 | C8 | H8 | 0.2° | 0.0° |
C1' | N9 | C4 | C5 | 179.6° | 180.0° |
C1' | N9 | C4 | N3 | 0.1° | 0.0° |
H1' | C1' | N9 | C8 | 139.6° | 150.0° |
H1' | C1' | N9 | C4 | 41.8° | 30.0° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 1.4° | 0.0° |
C8 | N9 | C4 | C5 | 0.7° | 0.0° |
C8 | N9 | C4 | N3 | 178.8° | 180.0° |
C4 | N9 | C8 | N7 | 1.3° | 0.0° |
C4 | N9 | C8 | H8 | 178.6° | 180.0° |
N9 | C4 | C5 | N7 | 0.1° | 0.0° |
N9 | C4 | C5 | C6 | 179.0° | 180.0° |
N9 | C4 | C5 | N3 | 179.5° | 180.0° |
N9 | C4 | N3 | C2 | 179.7° | 180.0° |
C8 | N7 | C5 | C6 | 179.6° | 180.0° |
C8 | N7 | C5 | C4 | 0.9° | 0.0° |
H8 | C8 | N7 | C5 | 178.6° | 180.0° |
N7 | C5 | C6 | O6 | 1.7° | 0.1° |
N7 | C5 | C6 | C4 | 178.6° | 179.9° |
N7 | C5 | C6 | N1 | 179.5° | 180.0° |
N7 | C5 | C4 | N3 | 179.6° | 180.0° |
O6 | C6 | C5 | N1 | 178.8° | 179.9° |
O6 | C6 | C5 | C4 | 179.7° | 179.9° |
O6 | C6 | N1 | C2 | 178.9° | 179.9° |
O6 | C6 | N1 | H1 | 1.1° | 0.1° |
C5 | C6 | N1 | C2 | 0.1° | 0.0° |
C5 | C6 | N1 | H1 | 179.9° | 180.0° |
C6 | C5 | C4 | N3 | 1.5° | 0.0° |
N1 | C6 | C5 | C4 | 0.9° | 0.0° |
C6 | N1 | C2 | H1 | 180.0° | 180.0° |
C6 | N1 | C2 | N2 | 179.1° | 179.9° |
C6 | N1 | C2 | N3 | 0.7° | 0.0° |
C5 | C4 | N3 | C2 | 0.9° | 0.0° |
N1 | C2 | N2 | N3 | 179.9° | 179.9° |
N1 | C2 | N2 | H21 | 180.0° | 109.7° |
N1 | C2 | N2 | H22 | 54.7° | 70.2° |
N1 | C2 | N3 | C4 | 0.3° | 0.0° |
H1 | N1 | C2 | N2 | 0.8° | 0.1° |
H1 | N1 | C2 | N3 | 179.3° | 180.0° |
C2 | N2 | H21 | H22 | 125.3° | 179.9° |
N2 | C2 | N3 | C4 | 179.6° | 180.0° |
N3 | C2 | N2 | H21 | 0.1° | 70.4° |
N3 | C2 | N2 | H22 | 125.4° | 109.7° |