LDY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C4	C5	sing	1.53Å	1.51Å
C5	O5	sing	1.43Å	1.45Å
C5	H51	sing	1.09Å	1.10Å
C5	H52	sing	1.09Å	1.10Å
C1	O5	sing	1.43Å	1.45Å
C2	C1	sing	1.53Å	1.56Å
C1	O1	sing	1.43Å	1.40Å
C1	H1	sing	1.09Å	1.10Å
O2	C2	sing	1.43Å	1.42Å
C3	C2	sing	1.53Å	1.54Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
O3	C3	sing	1.43Å	1.42Å
C3	C4	sing	1.53Å	1.52Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.42Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
O1	HO1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	C5	O5	109.7°	109.4°
C4	C5	H51	109.4°	109.5°
C4	C5	H52	109.4°	109.5°
C5	C4	C3	108.3°	109.1°
C5	C4	O4	110.1°	109.6°
C5	C4	H4	110.0°	109.5°
O5	C5	H51	109.4°	109.5°
O5	C5	H52	109.4°	109.4°
C5	O5	C1	114.1°	114.1°
H51	C5	H52	109.6°	109.5°
O5	C1	C2	111.9°	109.4°
O5	C1	O1	107.1°	109.4°
O5	C1	H1	109.0°	109.5°
C2	C1	O1	108.2°	109.5°
C2	C1	H1	108.0°	109.5°
C1	C2	O2	109.0°	109.5°
C1	C2	C3	114.3°	109.2°
C1	C2	H2	106.2°	109.6°
O1	C1	H1	112.7°	109.5°
C1	O1	HO1	109.5°	114.0°
O2	C2	C3	108.7°	109.5°
O2	C2	H2	112.1°	109.5°
C2	O2	HO2	109.5°	114.0°
C3	C2	H2	106.6°	109.6°
C2	C3	O3	110.4°	109.6°
C2	C3	C4	111.2°	109.0°
C2	C3	H3	107.6°	109.5°
O3	C3	C4	109.1°	109.6°
O3	C3	H3	109.7°	109.6°
C3	O3	HO3	109.5°	114.0°
C4	C3	H3	108.9°	109.6°
C3	C4	O4	109.9°	109.5°
C3	C4	H4	110.2°	109.5°
O4	C4	H4	108.4°	109.6°
C4	O4	HO4	109.5°	113.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4	C5	O5	H51	120.0°	120.0°
C4	C5	O5	H52	119.9°	119.9°
C4	C5	H51	H52	119.9°	120.0°
C4	C5	O5	C1	64.1°	61.2°
C5	C4	C3	C2	54.8°	57.0°
C5	C4	C3	O3	67.2°	62.8°
C5	C4	C3	O4	120.2°	120.0°
C5	C4	C3	H4	120.3°	119.8°
C5	C4	C3	H3	173.1°	176.9°
C5	C4	O4	H4	120.3°	120.2°
C5	C4	O4	HO4	22.7°	60.3°
O5	C5	H51	H52	119.9°	120.0°
C5	O5	C1	C2	50.9°	61.2°
C5	O5	C1	O1	169.3°	178.8°
C5	O5	C1	H1	68.5°	58.8°
O5	C5	C4	C3	64.5°	57.7°
O5	C5	C4	O4	55.6°	62.2°
O5	C5	C4	H4	175.0°	177.5°
H51	C5	O5	C1	175.9°	58.8°
H51	C5	C4	C3	175.5°	62.3°
H51	C5	C4	O4	64.4°	177.8°
H51	C5	C4	H4	55.0°	57.5°
H52	C5	O5	C1	55.9°	178.8°
H52	C5	C4	C3	55.4°	177.6°
H52	C5	C4	O4	175.6°	57.7°
H52	C5	C4	H4	65.0°	62.6°
O5	C1	C2	O1	117.8°	119.9°
O5	C1	C2	H1	120.0°	120.0°
O5	C1	O1	H1	119.9°	120.1°
O5	C1	C2	O2	162.6°	177.6°
O5	C1	C2	C3	40.8°	57.7°
O5	C1	C2	H2	76.4°	62.3°
O5	C1	O1	HO1	46.3°	60.1°
C2	C1	O1	H1	119.3°	120.1°
C1	C2	O2	C3	125.2°	119.7°
C1	C2	O2	H2	117.3°	120.1°
C1	C2	C3	H2	117.0°	120.0°
C1	C2	O2	HO2	11.1°	60.0°
C1	C2	C3	O3	77.1°	62.8°
C1	C2	C3	C4	44.2°	57.0°
C1	C2	C3	H3	163.3°	176.9°
C2	C1	O1	HO1	167.1°	179.9°
O1	C1	C2	O2	79.6°	62.5°
O1	C1	C2	C3	158.6°	177.6°
O1	C1	C2	H2	41.4°	57.6°
H1	C1	C2	O2	42.7°	57.6°
H1	C1	C2	C3	79.2°	62.3°
H1	C1	C2	H2	163.7°	177.7°
H1	C1	O1	HO1	73.6°	60.0°
O2	C2	C3	H2	121.0°	120.1°
O2	C2	C3	O3	45.0°	57.1°
O2	C2	C3	C4	166.2°	176.9°
O2	C2	C3	H3	74.7°	63.2°
C3	C2	O2	HO2	136.3°	179.7°
C2	C3	O3	C4	122.4°	119.5°
C2	C3	O3	H3	118.3°	120.2°
C2	C3	C4	H3	118.3°	119.8°
C2	C3	O3	HO3	96.9°	179.9°
C2	C3	C4	O4	65.5°	62.9°
C2	C3	C4	H4	175.1°	176.8°
H2	C2	O2	HO2	106.2°	60.1°
H2	C2	C3	O3	165.9°	177.2°
H2	C2	C3	C4	72.8°	63.0°
H2	C2	C3	H3	46.3°	56.9°
O3	C3	C4	H3	119.7°	120.3°
O3	C3	C4	O4	172.6°	177.2°
O3	C3	C4	H4	53.2°	57.0°
C4	C3	O3	HO3	140.7°	60.4°
C3	C4	O4	H4	120.5°	120.1°
C3	C4	O4	HO4	141.9°	180.0°
H3	C3	O3	HO3	21.5°	59.8°
H3	C3	C4	O4	52.9°	56.9°
H3	C3	C4	H4	66.5°	63.3°
H4	C4	O4	HO4	97.6°	59.8°

Definition date:	2008-01-09
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	2RI9