LDO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.47Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| CB | CG | sing | 1.53Å | 1.51Å | |
| CB | HB1 | sing | 1.09Å | 1.11Å | |
| CB | HB2 | sing | 1.09Å | 1.12Å | |
| CG | CD | sing | 1.53Å | 1.53Å | |
| CG | HG1 | sing | 1.09Å | 1.11Å | |
| CG | HG2 | sing | 1.09Å | 1.11Å | |
| CD | CE | sing | 1.53Å | 1.53Å | |
| CD | HD1 | sing | 1.09Å | 1.12Å | |
| CD | HD2 | sing | 1.09Å | 1.11Å | |
| CE | OZ | sing | 1.43Å | 1.42Å | |
| CE | HE1 | sing | 1.09Å | 1.11Å | |
| CE | HE2 | sing | 1.09Å | 1.11Å | |
| OZ | HOZ | sing | 0.97Å | 0.95Å | |
| C | O | doub | 1.21Å | 1.25Å | |
| C | OXT | sing | 1.34Å | 1.25Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 111.0° | 106.7° |
| CA | N | H2 | 111.6° | 106.7° |
| N | CA | CB | 111.0° | 109.5° |
| N | CA | C | 111.5° | 109.5° |
| N | CA | HA | 106.6° | 109.4° |
| H | N | H2 | 111.7° | 106.7° |
| CB | CA | C | 108.1° | 109.6° |
| CB | CA | HA | 110.1° | 109.5° |
| CA | CB | CG | 115.3° | 109.5° |
| CA | CB | HB1 | 110.1° | 109.5° |
| CA | CB | HB2 | 110.1° | 109.5° |
| C | CA | HA | 109.5° | 109.4° |
| CA | C | O | 118.4° | 120.0° |
| CA | C | OXT | 117.4° | 120.0° |
| CG | CB | HB1 | 110.1° | 109.5° |
| CG | CB | HB2 | 110.1° | 109.5° |
| CB | CG | CD | 111.4° | 109.5° |
| CB | CG | HG1 | 111.5° | 109.5° |
| CB | CG | HG2 | 111.5° | 109.5° |
| HB1 | CB | HB2 | 100.1° | 109.4° |
| CD | CG | HG1 | 111.6° | 109.4° |
| CD | CG | HG2 | 111.5° | 109.4° |
| CG | CD | CE | 113.9° | 109.6° |
| CG | CD | HD1 | 110.6° | 109.4° |
| CG | CD | HD2 | 110.6° | 109.4° |
| HG1 | CG | HG2 | 98.9° | 109.4° |
| CE | CD | HD1 | 110.6° | 109.5° |
| CE | CD | HD2 | 110.6° | 109.4° |
| CD | CE | OZ | 111.9° | 109.5° |
| CD | CE | HE1 | 111.3° | 109.4° |
| CD | CE | HE2 | 111.3° | 109.4° |
| HD1 | CD | HD2 | 99.7° | 109.5° |
| OZ | CE | HE1 | 111.3° | 109.5° |
| OZ | CE | HE2 | 111.3° | 109.5° |
| CE | OZ | HOZ | 112.0° | 106.9° |
| HE1 | CE | HE2 | 99.1° | 109.4° |
| O | C | OXT | 124.3° | 119.9° |
| C | OXT | HXT | 117.3° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.2° | 113.7° |
| N | CA | CB | C | 122.6° | 120.1° |
| N | CA | CB | HA | 117.8° | 119.9° |
| N | CA | C | HA | 117.8° | 119.9° |
| N | CA | CB | CG | 68.2° | 60.0° |
| N | CA | CB | HB1 | 57.1° | 60.1° |
| N | CA | CB | HB2 | 166.5° | 180.0° |
| N | CA | C | O | 142.3° | 30.1° |
| N | CA | C | OXT | 38.7° | 150.0° |
| H | N | CA | CB | 180.0° | 60.1° |
| H | N | CA | C | 59.4° | 60.0° |
| H | N | CA | HA | 60.1° | 180.0° |
| H2 | N | CA | CB | 54.7° | 53.7° |
| H2 | N | CA | C | 175.4° | 173.8° |
| H2 | N | CA | HA | 65.1° | 66.3° |
| CB | CA | C | HA | 120.0° | 120.0° |
| CA | CB | CG | HB1 | 125.3° | 120.0° |
| CA | CB | CG | HB2 | 125.3° | 120.1° |
| CA | CB | HB1 | HB2 | 115.9° | 120.0° |
| CA | CB | CG | CD | 152.9° | 180.0° |
| CA | CB | CG | HG1 | 27.6° | 60.0° |
| CA | CB | CG | HG2 | 81.9° | 60.0° |
| CB | CA | C | O | 95.4° | 90.0° |
| CB | CA | C | OXT | 83.6° | 89.9° |
| C | CA | CB | CG | 169.2° | 180.0° |
| C | CA | CB | HB1 | 65.5° | 60.0° |
| C | CA | CB | HB2 | 44.0° | 59.9° |
| CA | C | O | OXT | 178.9° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 179.9° |
| HA | CA | CB | CG | 49.6° | 60.0° |
| HA | CA | CB | HB1 | 174.9° | 180.0° |
| HA | CA | CB | HB2 | 75.7° | 60.1° |
| HA | CA | C | O | 24.5° | 150.0° |
| HA | CA | C | OXT | 156.5° | 30.1° |
| CG | CB | HB1 | HB2 | 115.9° | 119.9° |
| CB | CG | CD | HG1 | 125.2° | 120.1° |
| CB | CG | CD | HG2 | 125.2° | 120.0° |
| CB | CG | HG1 | HG2 | 117.4° | 120.0° |
| CB | CG | CD | CE | 63.0° | 180.0° |
| CB | CG | CD | HD1 | 62.2° | 59.9° |
| CB | CG | CD | HD2 | 171.7° | 60.0° |
| HB1 | CB | CG | CD | 81.8° | 59.9° |
| HB1 | CB | CG | HG1 | 152.9° | 180.0° |
| HB1 | CB | CG | HG2 | 43.4° | 60.1° |
| HB2 | CB | CG | CD | 27.6° | 59.9° |
| HB2 | CB | CG | HG1 | 97.7° | 60.1° |
| HB2 | CB | CG | HG2 | 152.9° | 179.9° |
| CD | CG | HG1 | HG2 | 117.5° | 119.9° |
| CG | CD | CE | HD1 | 125.3° | 120.0° |
| CG | CD | CE | HD2 | 125.3° | 120.0° |
| CG | CD | HD1 | HD2 | 116.4° | 119.9° |
| CG | CD | CE | OZ | 72.7° | 180.0° |
| CG | CD | CE | HE1 | 162.0° | 59.9° |
| CG | CD | CE | HE2 | 52.5° | 60.0° |
| HG1 | CG | CD | CE | 171.8° | 59.9° |
| HG1 | CG | CD | HD1 | 63.0° | 180.0° |
| HG1 | CG | CD | HD2 | 46.5° | 60.0° |
| HG2 | CG | CD | CE | 62.2° | 60.0° |
| HG2 | CG | CD | HD1 | 172.5° | 60.1° |
| HG2 | CG | CD | HD2 | 63.1° | 179.9° |
| CE | CD | HD1 | HD2 | 116.5° | 120.0° |
| CD | CE | OZ | HE1 | 125.2° | 120.0° |
| CD | CE | OZ | HE2 | 125.2° | 120.0° |
| CD | CE | HE1 | HE2 | 117.2° | 119.9° |
| CD | CE | OZ | HOZ | 180.0° | 180.0° |
| HD1 | CD | CE | OZ | 52.5° | 60.0° |
| HD1 | CD | CE | HE1 | 72.7° | 180.0° |
| HD1 | CD | CE | HE2 | 177.8° | 60.1° |
| HD2 | CD | CE | OZ | 162.0° | 60.0° |
| HD2 | CD | CE | HE1 | 36.8° | 60.0° |
| HD2 | CD | CE | HE2 | 72.8° | 179.9° |
| OZ | CE | HE1 | HE2 | 117.2° | 120.0° |
| HE1 | CE | OZ | HOZ | 54.7° | 60.0° |
| HE2 | CE | OZ | HOZ | 54.8° | 60.0° |
| O | C | OXT | HXT | 1.1° | 0.0° |
