LDH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.44Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | C | sing | 1.51Å | 1.51Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | CG | sing | 1.53Å | 1.54Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CG | CD | sing | 1.53Å | 1.52Å | |
| CG | HG1 | sing | 1.09Å | 1.10Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CD | CE | sing | 1.53Å | 1.53Å | |
| CD | HD1 | sing | 1.09Å | 1.10Å | |
| CD | HD2 | sing | 1.09Å | 1.10Å | |
| CE | NZ | sing | 1.47Å | 1.46Å | |
| CE | HE1 | sing | 1.09Å | 1.10Å | |
| CE | HE2 | sing | 1.09Å | 1.10Å | |
| NZ | CH | sing | 1.47Å | 1.45Å | |
| NZ | HNZ | sing | 1.01Å | 1.00Å | |
| CH | C1 | sing | 1.53Å | 1.48Å | |
| CH | HH1 | sing | 1.09Å | 1.10Å | |
| CH | HH2 | sing | 1.09Å | 1.10Å | |
| C1 | H11 | sing | 1.09Å | 1.10Å | |
| C1 | H12 | sing | 1.09Å | 1.10Å | |
| C1 | H13 | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.20Å | |
| C | OXT | sing | 1.34Å | 1.30Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | CB | 109.8° | 109.5° |
| N | CA | C | 110.2° | 109.5° |
| N | CA | HA | 108.9° | 109.5° |
| H | N | H2 | 109.5° | 110.9° |
| CB | CA | C | 109.7° | 109.5° |
| CB | CA | HA | 109.4° | 109.5° |
| CA | CB | CG | 115.8° | 109.4° |
| CA | CB | HB1 | 107.4° | 109.4° |
| CA | CB | HB2 | 105.9° | 109.5° |
| C | CA | HA | 108.9° | 109.4° |
| CA | C | O | 113.4° | 120.0° |
| CA | C | OXT | 116.3° | 120.0° |
| CG | CB | HB1 | 107.4° | 109.5° |
| CG | CB | HB2 | 105.9° | 109.5° |
| CB | CG | CD | 114.0° | 109.5° |
| CB | CG | HG1 | 108.0° | 109.5° |
| CB | CG | HG2 | 107.0° | 109.5° |
| HB1 | CB | HB2 | 114.6° | 109.5° |
| CD | CG | HG1 | 108.0° | 109.5° |
| CD | CG | HG2 | 107.0° | 109.4° |
| CG | CD | CE | 112.4° | 109.5° |
| CG | CD | HD1 | 108.5° | 109.4° |
| CG | CD | HD2 | 107.9° | 109.4° |
| HG1 | CG | HG2 | 113.1° | 109.4° |
| CE | CD | HD1 | 108.5° | 109.5° |
| CE | CD | HD2 | 107.9° | 109.5° |
| CD | CE | NZ | 111.7° | 109.4° |
| CD | CE | HE1 | 108.7° | 109.5° |
| CD | CE | HE2 | 108.3° | 109.5° |
| HD1 | CD | HD2 | 111.7° | 109.5° |
| NZ | CE | HE1 | 108.7° | 109.4° |
| NZ | CE | HE2 | 108.2° | 109.5° |
| CE | NZ | CH | 108.4° | 111.0° |
| CE | NZ | HNZ | 109.8° | 111.0° |
| HE1 | CE | HE2 | 111.2° | 109.5° |
| CH | NZ | HNZ | 109.8° | 111.0° |
| NZ | CH | C1 | 113.7° | 109.5° |
| NZ | CH | HH1 | 108.1° | 109.5° |
| NZ | CH | HH2 | 107.1° | 109.5° |
| C1 | CH | HH1 | 108.1° | 109.4° |
| C1 | CH | HH2 | 107.1° | 109.5° |
| CH | C1 | H11 | 109.5° | 109.4° |
| CH | C1 | H12 | 109.5° | 109.5° |
| CH | C1 | H13 | 109.4° | 109.5° |
| HH1 | CH | HH2 | 112.9° | 109.4° |
| H11 | C1 | H12 | 109.5° | 109.4° |
| H11 | C1 | H13 | 109.5° | 109.5° |
| H12 | C1 | H13 | 109.5° | 109.5° |
| O | C | OXT | 129.6° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | C | 121.2° | 120.0° |
| N | CA | CB | HA | 119.4° | 120.0° |
| N | CA | C | HA | 119.3° | 120.0° |
| N | CA | CB | CG | 109.8° | 65.0° |
| N | CA | CB | HB1 | 10.2° | 55.0° |
| N | CA | CB | HB2 | 133.1° | 175.0° |
| N | CA | C | O | 126.7° | 20.0° |
| N | CA | C | OXT | 61.2° | 160.0° |
| H | N | CA | CB | 151.3° | 176.1° |
| H | N | CA | C | 30.4° | 63.9° |
| H | N | CA | HA | 89.0° | 56.0° |
| H2 | N | CA | CB | 31.3° | 60.0° |
| H2 | N | CA | C | 89.6° | 60.0° |
| H2 | N | CA | HA | 151.0° | 179.9° |
| CB | CA | C | HA | 119.7° | 120.0° |
| CA | CB | CG | HB1 | 120.0° | 119.9° |
| CA | CB | CG | HB2 | 117.1° | 120.0° |
| CA | CB | HB1 | HB2 | 117.4° | 120.0° |
| CA | CB | CG | CD | 80.7° | 180.0° |
| CA | CB | CG | HG1 | 159.3° | 60.0° |
| CA | CB | CG | HG2 | 37.3° | 60.0° |
| CB | CA | C | O | 112.3° | 100.0° |
| CB | CA | C | OXT | 59.8° | 80.0° |
| C | CA | CB | CG | 129.0° | 175.0° |
| C | CA | CB | HB1 | 111.0° | 65.0° |
| C | CA | CB | HB2 | 11.9° | 55.0° |
| CA | C | O | OXT | 170.7° | 180.0° |
| CA | C | OXT | HXT | 170.5° | 180.0° |
| HA | CA | CB | CG | 9.6° | 55.0° |
| HA | CA | CB | HB1 | 129.6° | 175.0° |
| HA | CA | CB | HB2 | 107.5° | 65.0° |
| HA | CA | C | O | 7.4° | 140.0° |
| HA | CA | C | OXT | 179.4° | 40.0° |
| CG | CB | HB1 | HB2 | 117.4° | 120.0° |
| CB | CG | CD | HG1 | 120.0° | 120.0° |
| CB | CG | CD | HG2 | 118.0° | 120.0° |
| CB | CG | HG1 | HG2 | 118.1° | 120.0° |
| CB | CG | CD | CE | 124.3° | NaN° |
| CB | CG | CD | HD1 | 4.3° | 60.0° |
| CB | CG | CD | HD2 | 116.9° | 60.0° |
| HB1 | CB | CG | CD | 39.3° | 60.0° |
| HB1 | CB | CG | HG1 | 80.7° | 180.0° |
| HB1 | CB | CG | HG2 | 157.3° | 60.0° |
| HB2 | CB | CG | CD | 162.2° | 60.0° |
| HB2 | CB | CG | HG1 | 42.1° | 60.0° |
| HB2 | CB | CG | HG2 | 79.8° | 180.0° |
| CD | CG | HG1 | HG2 | 118.1° | 119.9° |
| CG | CD | CE | HD1 | 120.0° | 120.0° |
| CG | CD | CE | HD2 | 118.8° | 120.0° |
| CG | CD | HD1 | HD2 | 118.8° | 119.9° |
| CG | CD | CE | NZ | 179.1° | 180.0° |
| CG | CD | CE | HE1 | 60.9° | 60.0° |
| CG | CD | CE | HE2 | 60.1° | 60.0° |
| HG1 | CG | CD | CE | 115.7° | 60.0° |
| HG1 | CG | CD | HD1 | 124.3° | 180.0° |
| HG1 | CG | CD | HD2 | 3.1° | 60.1° |
| HG2 | CG | CD | CE | 6.3° | 60.0° |
| HG2 | CG | CD | HD1 | 113.7° | 60.0° |
| HG2 | CG | CD | HD2 | 125.1° | 180.0° |
| CE | CD | HD1 | HD2 | 118.8° | 120.0° |
| CD | CE | NZ | HE1 | 120.0° | 120.0° |
| CD | CE | NZ | HE2 | 119.1° | 120.0° |
| CD | CE | HE1 | HE2 | 119.1° | 120.0° |
| CD | CE | NZ | CH | 174.4° | 180.0° |
| CD | CE | NZ | HNZ | 54.4° | 56.1° |
| HD1 | CD | CE | NZ | 59.1° | 60.0° |
| HD1 | CD | CE | HE1 | 179.1° | 180.0° |
| HD1 | CD | CE | HE2 | 59.9° | 60.0° |
| HD2 | CD | CE | NZ | 62.1° | 60.0° |
| HD2 | CD | CE | HE1 | 57.9° | 60.0° |
| HD2 | CD | CE | HE2 | 178.9° | 180.0° |
| NZ | CE | HE1 | HE2 | 119.1° | 120.0° |
| CE | NZ | CH | HNZ | 120.0° | 123.9° |
| CE | NZ | CH | C1 | 177.6° | 180.0° |
| CE | NZ | CH | HH1 | 62.4° | 60.0° |
| CE | NZ | CH | HH2 | 59.4° | 60.0° |
| HE1 | CE | NZ | CH | 65.6° | 60.0° |
| HE1 | CE | NZ | HNZ | 174.4° | 176.1° |
| HE2 | CE | NZ | CH | 55.4° | 60.0° |
| HE2 | CE | NZ | HNZ | 64.6° | 63.9° |
| NZ | CH | C1 | HH1 | 120.0° | 120.0° |
| NZ | CH | C1 | HH2 | 118.1° | 120.1° |
| NZ | CH | HH1 | HH2 | 118.3° | 120.0° |
| NZ | CH | C1 | H11 | 12.1° | 60.0° |
| NZ | CH | C1 | H12 | 107.9° | 59.9° |
| NZ | CH | C1 | H13 | 132.1° | 180.0° |
| HNZ | NZ | CH | C1 | 57.6° | 56.1° |
| HNZ | NZ | CH | HH1 | 177.5° | 176.1° |
| HNZ | NZ | CH | HH2 | 60.6° | 64.0° |
| C1 | CH | HH1 | HH2 | 118.2° | 119.9° |
| CH | C1 | H11 | H12 | 120.0° | 119.9° |
| CH | C1 | H11 | H13 | 120.0° | 120.0° |
| CH | C1 | H12 | H13 | 120.0° | 120.1° |
| HH1 | CH | C1 | H11 | 132.1° | NaN° |
| HH1 | CH | C1 | H12 | 12.2° | 60.1° |
| HH1 | CH | C1 | H13 | 107.9° | 60.0° |
| HH2 | CH | C1 | H11 | 106.0° | 60.1° |
| HH2 | CH | C1 | H12 | 134.0° | 180.0° |
| HH2 | CH | C1 | H13 | 14.0° | 59.9° |
| H11 | C1 | H12 | H13 | 120.0° | 120.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
