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LDG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6C6doub1.22Å1.26Å
C6N1sing1.35Å1.40Å
C6C5sing1.41Å1.41Å
N1C2sing1.36Å1.38Å
C15O17sing1.43Å1.40Å
O17C17sing1.36Å1.35Å
N2C2sing1.37Å1.35Å
N2C2Rsing1.46Å1.42Å
C2N3doub1.31Å1.32Å
O19C19doub1.22Å1.23Å
C5N7sing1.35Å1.37ÅAromatic
C5C4doub1.40Å1.36ÅAromatic
N7C8doub1.30Å1.30ÅAromatic
C2RC16sing1.51Å1.50Å
C17C16doub1.39Å1.47ÅAromatic
C17C18sing1.40Å1.46ÅAromatic
C4N3sing1.34Å1.34Å
C4N9sing1.37Å1.36ÅAromatic
C19C18sing1.47Å1.46Å
C19C20sing1.48Å1.47Å
C1C20doub1.39Å1.37ÅAromatic
C1C71sing1.38Å1.37ÅAromatic
C16C9sing1.39Å1.47ÅAromatic
C8N9sing1.36Å1.36ÅAromatic
C18C7doub1.41Å1.46ÅAromatic
C20C51sing1.41Å1.46ÅAromatic
N9C1'sing1.47Å1.44Å
C71C3doub1.39Å1.37ÅAromatic
C9O1sing1.36Å1.35Å
C9C81doub1.39Å1.37ÅAromatic
C7C81sing1.39Å1.35ÅAromatic
C7C61sing1.48Å1.45Å
C51C61sing1.48Å1.46Å
C51C41doub1.39Å1.36ÅAromatic
C1'O4'sing1.44Å1.39Å
C1'C2'sing1.54Å1.50Å
O1C14sing1.43Å1.41Å
C3C41sing1.39Å1.37ÅAromatic
OP2Psing1.61Å1.42Å
O4'C4'sing1.44Å1.43Å
C61O61doub1.22Å1.22Å
C2'C3'sing1.55Å1.51Å
O5'Psing1.61Å1.57Å
O5'C5'sing1.43Å1.43Å
POP1sing1.61Å1.44Å
C4'C5'sing1.53Å1.50Å
C4'C3'sing1.55Å1.52Å
C3'O3'sing1.43Å1.42Å
C81H1sing1.08Å1.08Å
C1H2sing1.08Å1.08Å
C41H3sing1.08Å1.08Å
C3H4sing1.08Å1.08Å
C71H5sing1.08Å1.08Å
C14H6sing1.09Å1.10Å
C14H7sing1.09Å1.10Å
C14H8sing1.09Å1.10Å
C15H9sing1.09Å1.10Å
C15H10sing1.09Å1.10Å
C15H11sing1.09Å1.10Å
C2RH12sing1.09Å1.10Å
C2RH13sing1.09Å1.10Å
OP1H14sing0.97Å0.95Å
C5'H15sing1.09Å1.10Å
C5'H16sing1.09Å1.10Å
C4'H17sing1.09Å1.10Å
C3'H18sing1.09Å1.10Å
O3'H19sing0.97Å0.95Å
C2'H20sing1.09Å1.10Å
C2'H21sing1.09Å1.10Å
C1'H22sing1.09Å1.10Å
C8H23sing1.08Å1.08Å
N2H24sing0.97Å1.00Å
N1H25sing0.97Å1.00Å
OP2H26sing0.97Å0.95Å
POP3doub1.48Å1.57Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6C6N1121.4°120.8°
O6C6C5128.1°120.8°
N1C6C5110.5°118.4°
C6N1C2126.3°120.3°
C6N1H25116.9°119.8°
C6C5N7130.6°134.2°
C6C5C4119.2°118.6°
N1C2N2118.8°119.1°
N1C2N3121.7°121.9°
C2N1H25116.8°119.9°
C15O17C17117.9°117.0°
O17C15H9109.5°109.5°
O17C15H10109.5°109.5°
O17C15H11109.5°109.5°
O17C17C16123.3°120.1°
O17C17C18120.6°120.1°
C2N2C2R120.6°120.1°
N2C2N3119.4°119.0°
C2N2H24119.7°119.9°
N2C2RC16121.2°109.5°
N2C2RH12106.5°109.5°
N2C2RH13106.5°109.4°
C2RN2H24119.7°120.0°
C2N3C4113.0°121.1°
O19C19C18120.5°120.3°
O19C19C20120.3°120.4°
N7C5C4110.1°107.3°
C5N7C8106.2°109.3°
C5C4N3129.2°119.7°
C5C4N9104.9°106.0°
N7C8N9110.3°109.8°
N7C8H23124.8°125.1°
C2RC16C17125.2°119.8°
C2RC16C9116.3°119.8°
C16C2RH12106.5°109.5°
C16C2RH13106.5°109.5°
C16C17C18116.0°119.7°
C17C16C9118.4°120.3°
C17C18C19119.4°120.6°
C17C18C7121.0°119.7°
N3C4N9125.9°134.3°
C4N9C8108.3°107.5°
C4N9C1'125.9°126.2°
C18C19C20119.2°119.3°
C19C18C7119.5°119.7°
C19C20C1119.9°120.6°
C19C20C51120.5°119.7°
C20C1C71118.9°119.8°
C1C20C51119.5°119.8°
C20C1H2120.5°120.1°
C1C71C3121.2°120.4°
C71C1H2120.5°120.1°
C1C71H5119.4°119.8°
C16C9O1116.0°119.7°
C16C9C81122.6°120.5°
C8N9C1'125.6°126.3°
N9C8H23124.8°125.1°
C18C7C81120.8°119.8°
C18C7C61121.3°119.6°
C20C51C61120.0°119.7°
C20C51C41119.7°119.8°
N9C1'O4'108.7°110.4°
N9C1'C2'113.1°110.4°
N9C1'H22109.9°110.4°
C71C3C41121.7°120.4°
C71C3H4119.2°119.8°
C3C71H5119.4°119.8°
O1C9C81121.4°119.8°
C9O1C14122.2°117.0°
C9C81C7121.1°119.9°
C9C81H1119.4°120.1°
C81C7C61118.0°120.5°
C7C81H1119.4°120.0°
C7C61C51119.4°119.2°
C7C61O61120.4°120.4°
C61C51C41120.4°120.5°
C51C61O61120.2°120.4°
C51C41C3118.9°119.8°
C51C41H3120.5°120.1°
O4'C1'C2'105.2°104.8°
C1'O4'C4'112.0°105.3°
O4'C1'H22110.7°110.3°
C1'C2'C3'106.1°104.1°
C1'C2'H20110.3°110.5°
C1'C2'H21110.3°110.6°
C2'C1'H22109.1°110.4°
O1C14H6109.5°109.5°
O1C14H7109.5°109.4°
O1C14H8109.5°109.5°
C3C41H3120.5°120.1°
C41C3H4119.2°119.8°
OP2PO5'115.1°109.5°
OP2POP1116.3°109.5°
POP2H26109.5°114.0°
OP2POP3106.0°109.4°
O4'C4'C5'104.3°110.4°
O4'C4'C3'106.3°104.8°
O4'C4'H17111.0°110.5°
C2'C3'C4'104.4°104.1°
C2'C3'O3'109.9°110.5°
C2'C3'H18110.1°110.6°
C3'C2'H20110.3°110.5°
C3'C2'H21110.3°110.5°
PO5'C5'116.6°123.0°
O5'POP1108.3°109.5°
O5'POP3102.1°109.5°
O5'C5'C4'110.8°109.5°
O5'C5'H15109.1°109.5°
O5'C5'H16109.2°109.4°
POP1H14109.5°114.1°
OP1POP3107.8°109.5°
C5'C4'C3'115.5°110.4°
C4'C5'H15109.2°109.5°
C4'C5'H16109.1°109.5°
C5'C4'H17109.9°110.3°
C4'C3'O3'110.8°110.5°
C3'C4'H17109.7°110.3°
C4'C3'H18110.0°110.5°
O3'C3'H18111.4°110.5°
C3'O3'H19109.5°114.0°
H6C14H7109.5°109.5°
H6C14H8109.5°109.5°
H7C14H8109.4°109.5°
H9C15H10109.5°109.5°
H9C15H11109.4°109.5°
H10C15H11109.5°109.5°
H12C2RH13109.5°109.5°
H15C5'H16109.5°109.4°
H20C2'H21109.5°110.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6C6N1C5179.4°179.5°
O6C6N1C2179.8°179.9°
O6C6C5N70.8°0.3°
O6C6C5C4179.1°179.9°
O6C6N1H250.2°0.3°
C6N1C2H25180.0°179.7°
C6N1C2N2179.6°179.8°
C6N1C2N31.7°0.2°
N1C6C5N7179.8°179.8°
N1C6C5C40.3°0.4°
C5C6N1C20.8°0.4°
C6C5N7C4179.9°179.7°
C6C5N7C8179.9°180.0°
C6C5C4N30.5°0.2°
C6C5C4N9179.1°179.7°
C5C6N1H25179.2°179.8°
N1C2N2N3177.9°179.9°
N1C2N2C2R176.9°180.0°
N1C2N3C41.4°0.1°
N1C2N2H243.2°0.0°
C15O17C17C16103.3°90.0°
C15O17C17C1879.9°90.0°
O17C15H9H10120.0°120.0°
O17C15H9H11120.0°120.0°
O17C15H10H11120.0°120.0°
O17C17C16C2R4.8°0.0°
O17C17C16C18176.9°180.0°
O17C17C18C191.8°0.0°
O17C17C16C9179.0°180.0°
O17C17C18C7178.2°179.9°
C17O17C15H9180.0°180.0°
C17O17C15H1060.0°60.0°
C17O17C15H1160.0°60.0°
C2N2C2RH24180.0°179.9°
C2N2C2RC1692.9°180.0°
N2C2N3C4179.3°180.0°
C2N2C2RH1228.7°59.9°
C2N2C2RH13145.5°60.0°
N2C2N1H250.4°0.0°
C2RN2C2N31.1°0.1°
N2C2RC16H12121.6°120.0°
N2C2RC16H13121.6°120.0°
N2C2RC16C1746.3°90.0°
N2C2RC16C9137.5°90.0°
N2C2RH12H13114.7°119.9°
C2N3C4C50.3°0.1°
C2N3C4N9177.9°180.0°
N3C2N2H24178.9°180.0°
N3C2N1H25178.2°179.9°
O19C19C18C170.6°13.9°
O19C19C18C20179.1°179.8°
O19C19C20C10.6°13.8°
O19C19C18C7179.4°166.2°
O19C19C20C51179.9°166.0°
N7C5C4N3179.6°180.0°
N7C5C4N91.0°0.1°
C5N7C8N91.0°0.4°
C5N7C8H23179.0°179.9°
C4C5N7C80.0°0.2°
C5C4N3N9178.2°179.9°
C5C4N9C81.6°0.3°
C5C4N9C1'177.2°180.0°
N7C8N9C41.7°0.5°
N7C8N9H23180.0°179.6°
N7C8N9C1'177.3°179.9°
C2RC16C17C9176.2°180.0°
C2RC16C17C18178.3°180.0°
C2RC16C9O11.2°0.0°
C2RC16C9C81178.2°180.0°
C16C2RH12H13114.7°120.0°
C16C2RN2H2487.2°0.0°
C16C17C18C19178.8°180.0°
C16C17C18C71.2°0.1°
C17C16C9O1177.8°180.0°
C17C16C9C811.6°0.0°
C17C16C2RH12167.8°150.0°
C17C16C2RH1375.4°30.0°
C17C18C19C7180.0°179.9°
C17C18C19C20179.7°165.8°
C18C17C16C92.1°0.0°
C17C18C7C810.3°0.2°
C17C18C7C61179.6°179.8°
N3C4N9C8179.8°179.8°
N3C4N9C1'4.3°0.1°
C4N9C8C1'175.5°179.7°
C4N9C1'O4'124.0°156.4°
C4N9C1'C2'119.5°88.2°
C4N9C1'H222.7°34.2°
C4N9C8H23178.3°179.9°
C18C19C20C1179.7°166.0°
C18C19C20C511.0°14.3°
C19C18C7C81179.7°179.9°
C19C18C7C610.4°0.0°
C19C20C1C51179.3°179.7°
C19C20C1C71179.1°180.0°
C20C19C18C70.3°14.0°
C19C20C51C611.0°0.5°
C19C20C51C41179.1°180.0°
C19C20C1H20.9°0.1°
C20C1C71H2180.0°179.9°
C20C1C71C31.0°0.0°
C1C20C51C61179.7°179.7°
C1C20C51C410.2°0.3°
C20C1C71H5179.0°180.0°
C71C1C20C510.3°0.3°
C1C71C3H5180.0°179.9°
C1C71C3C411.8°0.3°
C1C71C3H4178.2°180.0°
C16C9O1C81179.4°180.0°
C16C9C81C70.1°0.0°
C16C9O1C14159.8°180.0°
C16C9C81H1179.9°180.0°
C9C16C2RH1215.9°30.0°
C9C16C2RH13100.9°150.0°
C8N9C1'O4'61.2°23.2°
C8N9C1'C2'55.2°92.1°
C8N9C1'H22177.4°145.5°
C18C7C81C90.9°0.1°
C18C7C81C61179.3°180.0°
C18C7C61C510.4°13.7°
C18C7C61O61179.1°166.3°
C18C7C81H1179.1°179.9°
C20C51C61C70.4°13.4°
C20C51C61C41179.9°179.4°
C20C51C41C31.0°0.0°
C20C51C61O61179.8°166.6°
C51C20C1H2179.7°179.7°
C20C51C41H3179.0°180.0°
N9C1'O4'C2'121.4°118.8°
N9C1'O4'H22120.9°122.3°
N9C1'C2'H22122.7°122.4°
N9C1'O4'C4'146.0°159.3°
N9C1'C2'C3'142.2°142.8°
N9C1'C2'H2098.4°24.1°
N9C1'C2'H2122.7°98.5°
C1'N9C8H232.7°0.2°
C71C3C41C511.8°0.3°
C71C3C41H4180.0°179.6°
C3C71C1H2179.0°180.0°
C71C3C41H3178.2°179.7°
O1C9C81C7179.3°180.0°
O1C9C81H10.7°0.0°
C9O1C14H6180.0°180.0°
C9O1C14H760.0°60.0°
C9O1C14H860.0°60.0°
C9C81C7H1180.0°180.0°
C9C81C7C61179.8°179.9°
C81C9O1C1420.7°0.0°
C81C7C61C51179.6°166.3°
C81C7C61O610.2°13.6°
C7C61C51O61179.5°180.0°
C7C61C51C41179.7°166.0°
C61C7C81H10.2°0.1°
C61C51C41C3178.9°179.4°
C61C51C41H31.1°0.5°
C51C41C3H3180.0°180.0°
C41C51C61O610.3°13.9°
C51C41C3H4178.2°180.0°
O4'C1'C2'H22118.9°118.8°
O4'C1'C2'C3'23.7°24.0°
C1'O4'C4'C5'138.0°159.3°
C1'O4'C4'C3'15.5°40.5°
C1'O4'C4'H17103.7°78.3°
O4'C1'C2'H20143.1°94.7°
O4'C1'C2'H2195.8°142.7°
C2'C1'O4'C4'24.7°40.5°
C1'C2'C3'H20119.5°118.6°
C1'C2'C3'H21119.5°118.8°
C1'C2'C3'C4'14.4°0.0°
C1'C2'C3'O3'104.4°118.6°
C1'C2'C3'H18132.5°118.7°
C1'C2'H20H21121.6°122.7°
O1C14H6H7120.0°120.0°
O1C14H6H8120.0°120.0°
O1C14H7H8120.0°120.0°
C41C3C71H5178.2°179.7°
OP2PO5'OP1132.1°120.0°
OP2PO5'OP3114.3°120.0°
OP2PO5'C5'153.6°65.0°
OP2POP1OP3118.8°120.0°
OP2POP1H14118.9°60.0°
O4'C4'C3'C2'0.4°24.0°
O4'C4'C5'O5'39.3°69.6°
O4'C4'C5'C3'116.3°115.4°
O4'C4'C5'H17119.1°122.4°
O4'C4'C3'H17120.1°118.9°
O4'C4'C3'O3'117.8°142.6°
O4'C4'C5'H15159.5°50.4°
O4'C4'C5'H1680.9°170.4°
O4'C4'C3'H18118.5°94.8°
C4'O4'C1'H2293.1°78.4°
C2'C3'C4'C5'114.7°142.8°
C2'C3'C4'O3'118.2°118.6°
C2'C3'C4'H18118.1°118.8°
C2'C3'O3'H18122.3°122.7°
C2'C3'C4'H17120.5°95.0°
C2'C3'O3'H19180.0°65.4°
C3'C2'H20H21121.6°122.7°
C3'C2'C1'H2295.2°94.8°
O5'POP1OP3109.7°120.0°
PO5'C5'C4'154.4°180.0°
O5'POP1H14109.7°180.0°
PO5'C5'H1534.2°59.9°
PO5'C5'H1685.4°60.0°
O5'POP2H26112.0°60.0°
C5'O5'POP121.5°175.0°
O5'C5'C4'H15120.2°120.1°
O5'C5'C4'H16120.2°120.0°
O5'C5'C4'C3'76.9°175.0°
O5'C5'H15H16119.4°120.0°
O5'C5'C4'H17158.4°52.7°
C5'O5'POP392.0°55.0°
OP1POP2H26119.8°60.0°
C5'C4'C3'H17124.8°122.2°
C5'C4'C3'O3'127.0°98.6°
C4'C5'H15H16119.4°120.0°
C5'C4'C3'H183.4°24.0°
C4'C3'O3'H18122.8°122.6°
C3'C4'C5'H1543.3°65.0°
C3'C4'C5'H16162.9°55.0°
C4'C3'O3'H1965.1°180.0°
C4'C3'C2'H20133.9°118.6°
C4'C3'C2'H21105.1°118.8°
O3'C3'C4'H172.3°23.7°
O3'C3'C2'H2015.0°122.8°
O3'C3'C2'H21136.1°0.1°
H2C1C71H51.0°0.1°
H3C41C3H41.8°0.1°
H4C3C71H51.8°0.1°
H6C14H7H8120.0°120.0°
H9C15H10H11119.9°120.0°
H12C2RN2H24151.2°120.0°
H13C2RN2H2434.5°120.0°
H14OP1POP30.0°60.0°
H15C5'C4'H1781.4°172.8°
H16C5'C4'H1738.2°67.2°
H17C4'C3'H18121.4°146.3°
H18C3'O3'H1957.7°57.4°
H18C3'C2'H20108.1°0.1°
H18C3'C2'H2113.0°122.5°
H20C2'C1'H2224.3°146.5°
H21C2'C1'H22145.4°23.9°
H26OP2POP30.0°180.0°

224931

PDB entries from 2024-09-11

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