LCC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5'	C5'	sing	1.43Å	1.42Å
O5'	P	sing	1.61Å	1.61Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	H5'1	sing	1.09Å	1.09Å
C5'	H5'2	sing	1.09Å	1.09Å
C4'	O4'	sing	1.46Å	1.43Å
C4'	C3'	sing	1.57Å	1.53Å
C4'	C6'	sing	1.56Å	1.54Å
O4'	C1'	sing	1.44Å	1.43Å
C1'	N1	sing	1.46Å	1.50Å
C1'	C2'	sing	1.56Å	1.54Å
C1'	H1'	sing	1.09Å	1.09Å
N1	C6	sing	1.36Å	1.38Å
N1	C2	sing	1.35Å	1.40Å
C6	C5	doub	1.35Å	1.36Å
C6	H6	sing	1.08Å	1.08Å
C5	C5M	sing	1.51Å	1.52Å
C5	C4	sing	1.41Å	1.44Å
C5M	H5M1	sing	1.09Å	1.09Å
C5M	H5M2	sing	1.09Å	1.09Å
C5M	H5M3	sing	1.09Å	1.09Å
C4	N4	sing	1.38Å	1.34Å
C4	N3	doub	1.33Å	1.34Å
N4	H41	sing	0.97Å	1.01Å
N4	H42	sing	0.97Å	1.01Å
N3	C2	sing	1.33Å	1.36Å
C2	O2	doub	1.22Å	1.23Å
C3'	C2'	sing	1.57Å	1.52Å
C3'	O3'	sing	1.43Å	1.42Å
C3'	H3'	sing	1.09Å	1.09Å
C2'	O2'	sing	1.46Å	1.43Å
C2'	H2'1	sing	1.09Å	1.09Å
O2'	C6'	sing	1.44Å	1.43Å
O3'	H3T	sing	0.97Å	0.96Å
C6'	H6'1	sing	1.09Å	1.09Å
C6'	H6'2	sing	1.09Å	1.09Å
P	O1P	sing	1.61Å	1.48Å
P	O2P	doub	1.48Å	1.48Å
P	OXT	sing	1.61Å	1.61Å
O1P	H1P	sing	0.97Å	0.95Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5'	O5'	P	122.7°	106.8°
O5'	C5'	C4'	107.7°	109.5°
O5'	C5'	H5'1	110.4°	109.5°
O5'	C5'	H5'2	109.8°	109.4°
O5'	P	O1P	108.2°	109.5°
O5'	P	O2P	107.5°	109.4°
O5'	P	OXT	104.2°	109.4°
C4'	C5'	H5'1	110.0°	109.5°
C4'	C5'	H5'2	109.6°	109.4°
C5'	C4'	O4'	112.5°	116.3°
C5'	C4'	C3'	114.7°	117.3°
C5'	C4'	C6'	116.0°	116.5°
H5'1	C5'	H5'2	109.4°	109.5°
O4'	C4'	C3'	104.7°	101.2°
O4'	C4'	C6'	107.4°	103.9°
C4'	O4'	C1'	106.4°	106.9°
C3'	C4'	C6'	100.3°	99.0°
C4'	C3'	C2'	88.5°	93.1°
C4'	C3'	O3'	117.0°	112.7°
C4'	C3'	H3'	112.4°	112.6°
C4'	C6'	O2'	101.4°	105.4°
C4'	C6'	H6'1	112.7°	110.3°
C4'	C6'	H6'2	110.2°	110.3°
O4'	C1'	N1	113.0°	110.3°
O4'	C1'	C2'	100.7°	105.4°
O4'	C1'	H1'	111.9°	110.3°
N1	C1'	C2'	113.1°	110.3°
N1	C1'	H1'	107.8°	110.2°
C1'	N1	C6	121.7°	119.8°
C1'	N1	C2	118.1°	119.9°
C2'	C1'	H1'	110.2°	110.2°
C1'	C2'	C3'	101.0°	98.9°
C1'	C2'	O2'	107.7°	103.9°
C1'	C2'	H2'1	113.3°	117.2°
C6	N1	C2	120.1°	120.3°
N1	C6	C5	121.5°	119.3°
N1	C6	H6	119.4°	120.3°
N1	C2	N3	118.9°	121.2°
N1	C2	O2	121.3°	119.4°
C5	C6	H6	119.1°	120.4°
C6	C5	C5M	120.6°	120.5°
C6	C5	C4	117.2°	118.9°
C5M	C5	C4	122.2°	120.5°
C5	C5M	H5M1	110.0°	109.5°
C5	C5M	H5M2	110.4°	109.5°
C5	C5M	H5M3	109.5°	109.4°
C5	C4	N4	121.7°	120.2°
C5	C4	N3	120.9°	119.6°
H5M1	C5M	H5M2	108.5°	109.4°
H5M1	C5M	H5M3	109.3°	109.5°
H5M2	C5M	H5M3	109.1°	109.5°
N4	C4	N3	117.5°	120.2°
C4	N4	H41	119.1°	120.0°
C4	N4	H42	120.1°	120.0°
C4	N3	C2	121.4°	120.7°
H41	N4	H42	120.7°	120.0°
N3	C2	O2	119.9°	119.4°
C2'	C3'	O3'	114.4°	112.5°
C2'	C3'	H3'	112.9°	112.5°
C3'	C2'	O2'	105.2°	101.1°
C3'	C2'	H2'1	114.2°	116.7°
O3'	C3'	H3'	110.2°	112.1°
C3'	O3'	H3T	108.4°	106.9°
O2'	C2'	H2'1	114.3°	116.3°
C2'	O2'	C6'	105.6°	107.0°
O2'	C6'	H6'1	113.5°	110.3°
O2'	C6'	H6'2	109.6°	110.3°
H6'1	C6'	H6'2	109.1°	110.2°
O1P	P	O2P	119.6°	109.5°
O1P	P	OXT	108.2°	109.4°
P	O1P	H1P	108.1°	106.8°
O2P	P	OXT	108.2°	109.5°
P	OXT	HXT	104.3°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	C5'	C4'	H5'1	120.3°	120.1°
O5'	C5'	C4'	H5'2	119.4°	119.9°
O5'	C5'	H5'1	H5'2	120.8°	119.9°
O5'	C5'	C4'	O4'	63.4°	61.2°
O5'	C5'	C4'	C3'	56.1°	178.9°
O5'	C5'	C4'	C6'	172.4°	61.9°
C5'	O5'	P	O1P	43.3°	180.0°
C5'	O5'	P	O2P	173.7°	60.0°
C5'	O5'	P	OXT	71.6°	60.1°
P	O5'	C5'	C4'	176.6°	180.0°
P	O5'	C5'	H5'1	63.3°	60.0°
P	O5'	C5'	H5'2	57.3°	60.0°
O5'	P	O1P	O2P	123.3°	120.0°
O5'	P	O1P	OXT	112.3°	120.0°
O5'	P	O2P	OXT	112.0°	120.0°
O5'	P	O1P	H1P	180.0°	179.9°
O5'	P	OXT	HXT	180.0°	60.0°
C4'	C5'	H5'1	H5'2	120.4°	120.0°
C5'	C4'	O4'	C3'	125.2°	128.3°
C5'	C4'	O4'	C6'	128.8°	129.4°
C5'	C4'	C3'	C6'	125.0°	126.2°
C5'	C4'	O4'	C1'	157.0°	166.1°
C5'	C4'	C3'	C2'	178.2°	177.3°
C5'	C4'	C3'	O3'	65.0°	61.3°
C5'	C4'	C3'	H3'	64.0°	66.7°
C5'	C4'	C6'	O2'	166.9°	158.9°
C5'	C4'	C6'	H6'1	71.3°	39.9°
C5'	C4'	C6'	H6'2	50.8°	82.1°
H5'1	C5'	C4'	O4'	56.9°	58.9°
H5'1	C5'	C4'	C3'	176.5°	61.0°
H5'1	C5'	C4'	C6'	67.3°	178.0°
H5'2	C5'	C4'	O4'	177.2°	179.0°
H5'2	C5'	C4'	C3'	63.3°	59.1°
H5'2	C5'	C4'	C6'	53.0°	58.0°
O4'	C4'	C3'	C6'	111.2°	106.2°
C4'	O4'	C1'	N1	114.3°	122.3°
C4'	O4'	C1'	C2'	6.6°	3.3°
C4'	O4'	C1'	H1'	123.7°	115.7°
O4'	C4'	C3'	C2'	54.4°	55.1°
O4'	C4'	C3'	O3'	171.2°	171.2°
O4'	C4'	C3'	H3'	59.8°	60.9°
O4'	C4'	C6'	O2'	66.3°	71.8°
O4'	C4'	C6'	H6'1	55.4°	169.1°
O4'	C4'	C6'	H6'2	177.6°	47.2°
C3'	C4'	O4'	C1'	31.8°	37.9°
C4'	C3'	C2'	C1'	57.0°	51.1°
C4'	C3'	C2'	O3'	119.1°	116.2°
C4'	C3'	C2'	H3'	113.7°	116.0°
C4'	C3'	O3'	H3'	130.0°	128.2°
C4'	C3'	C2'	O2'	54.9°	55.1°
C4'	C3'	C2'	H2'1	178.9°	177.7°
C3'	C4'	C6'	O2'	42.8°	32.2°
C4'	C3'	O3'	H3T	72.1°	165.2°
C3'	C4'	C6'	H6'1	164.6°	86.9°
C3'	C4'	C6'	H6'2	73.3°	151.2°
C6'	C4'	O4'	C1'	74.2°	64.5°
C6'	C4'	C3'	C2'	56.8°	51.1°
C6'	C4'	C3'	O3'	60.0°	64.9°
C6'	C4'	C3'	H3'	171.1°	167.1°
C4'	C6'	O2'	C2'	6.8°	3.4°
C4'	C6'	O2'	H6'1	121.2°	119.1°
C4'	C6'	O2'	H6'2	116.5°	119.0°
C4'	C6'	H6'1	H6'2	122.8°	122.0°
O4'	C1'	N1	C2'	113.6°	116.0°
O4'	C1'	N1	H1'	124.3°	122.0°
O4'	C1'	C2'	H1'	118.3°	119.0°
O4'	C1'	N1	C6	16.7°	21.4°
O4'	C1'	N1	C2	162.7°	158.6°
O4'	C1'	C2'	C3'	42.9°	32.1°
O4'	C1'	C2'	O2'	67.1°	71.7°
O4'	C1'	C2'	H2'1	165.4°	158.4°
N1	C1'	C2'	H1'	120.8°	122.0°
C1'	N1	C6	C2	179.4°	180.0°
C1'	N1	C6	C5	179.6°	180.0°
C1'	N1	C6	H6	0.4°	0.1°
C1'	N1	C2	N3	179.9°	180.0°
C1'	N1	C2	O2	0.2°	0.0°
N1	C1'	C2'	C3'	78.0°	86.9°
N1	C1'	C2'	O2'	172.0°	169.3°
N1	C1'	C2'	H2'1	44.5°	39.4°
C2'	C1'	N1	C6	96.9°	94.6°
C2'	C1'	N1	C2	83.7°	85.4°
C1'	C2'	C3'	O2'	111.9°	106.2°
C1'	C2'	C3'	H2'1	121.9°	126.6°
C1'	C2'	C3'	O3'	176.1°	167.2°
C1'	C2'	C3'	H3'	56.8°	65.0°
C1'	C2'	O2'	H2'1	126.8°	130.4°
C1'	C2'	O2'	C6'	74.9°	64.4°
H1'	C1'	N1	C6	141.0°	143.4°
H1'	C1'	N1	C2	38.4°	36.6°
H1'	C1'	C2'	C3'	161.2°	151.1°
H1'	C1'	C2'	O2'	51.2°	47.3°
H1'	C1'	C2'	H2'1	76.2°	82.6°
N1	C6	C5	H6	179.2°	179.9°
N1	C6	C5	C5M	179.2°	180.0°
N1	C6	C5	C4	0.8°	0.3°
C6	N1	C2	N3	0.7°	0.0°
C6	N1	C2	O2	179.6°	179.9°
C2	N1	C6	C5	1.1°	0.0°
C2	N1	C6	H6	179.7°	179.9°
N1	C2	N3	C4	0.1°	0.4°
N1	C2	N3	O2	179.7°	180.0°
C6	C5	C5M	C4	180.0°	179.6°
C6	C5	C5M	H5M1	131.2°	180.0°
C6	C5	C5M	H5M2	11.5°	60.0°
C6	C5	C5M	H5M3	108.6°	60.0°
C6	C5	C4	N4	179.5°	180.0°
C6	C5	C4	N3	0.2°	0.7°
H6	C6	C5	C5M	0.0°	0.1°
H6	C6	C5	C4	180.0°	179.8°
C5	C5M	H5M1	H5M2	120.8°	120.0°
C5	C5M	H5M1	H5M3	120.3°	120.0°
C5	C5M	H5M2	H5M3	120.4°	120.0°
C5M	C5	C4	N4	0.5°	0.3°
C5M	C5	C4	N3	179.8°	179.7°
C4	C5	C5M	H5M1	48.8°	0.3°
C4	C5	C5M	H5M2	168.5°	119.7°
C4	C5	C5M	H5M3	71.4°	120.3°
C5	C4	N4	N3	179.7°	179.3°
C5	C4	N4	H41	178.6°	179.4°
C5	C4	N4	H42	1.1°	0.6°
C5	C4	N3	C2	0.2°	0.7°
H5M1	C5M	H5M2	H5M3	119.0°	120.0°
C4	N4	H41	H42	177.5°	180.0°
N4	C4	N3	C2	179.8°	180.0°
N3	C4	N4	H41	1.0°	0.1°
N3	C4	N4	H42	178.5°	179.9°
C4	N3	C2	O2	179.8°	179.6°
C2'	C3'	O3'	H3'	128.5°	128.0°
C3'	C2'	O2'	H2'1	126.1°	127.4°
C3'	C2'	O2'	C6'	32.1°	37.8°
C2'	C3'	O3'	H3T	173.6°	61.4°
O3'	C3'	C2'	O2'	64.2°	61.1°
O3'	C3'	C2'	H2'1	62.0°	66.1°
H3'	C3'	C2'	O2'	168.6°	171.1°
H3'	C3'	C2'	H2'1	65.2°	61.7°
H3'	C3'	O3'	H3T	57.9°	66.6°
C2'	O2'	C6'	H6'1	128.0°	122.4°
C2'	O2'	C6'	H6'2	109.8°	115.6°
H2'1	C2'	O2'	C6'	158.2°	165.2°
O2'	C6'	H6'1	H6'2	122.5°	122.0°
O1P	P	O2P	OXT	124.3°	120.0°
O1P	P	OXT	HXT	65.1°	59.9°
O2P	P	O1P	H1P	56.7°	60.0°
O2P	P	OXT	HXT	65.9°	180.0°
OXT	P	O1P	H1P	67.6°	60.1°

Definition date:	2002-06-27
Last modified:	2011-06-04
Release status:	REL
Processing site:	EBI
Replaces:	LCH
Derived from:	1H0Q