Obsolete: LC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.62Å | 94.33Å | |
OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
P | OP1 | doub | 1.50Å | 1.49Å | |
P | OP2 | sing | 1.62Å | 1.49Å | |
P | O5' | sing | 1.62Å | 1.62Å | |
OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
O5' | C5' | sing | 1.42Å | 1.44Å | |
C5' | C4' | sing | 1.52Å | 1.52Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.52Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.40Å | |
C3' | C2' | sing | 1.51Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.41Å | 1.40Å | |
C2' | C1' | sing | 1.52Å | 1.51Å | |
C2' | H2' | sing | 1.10Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N1 | sing | 1.44Å | 1.49Å | |
C1' | H1' | sing | 1.10Å | 1.11Å | |
N1 | C2 | sing | 1.42Å | 1.42Å | |
N1 | C6 | sing | 1.39Å | 1.38Å | |
C2 | O2 | doub | 1.23Å | 1.25Å | |
C2 | N3 | sing | 1.38Å | 1.37Å | |
N3 | C4 | doub | 1.31Å | 1.35Å | |
C4 | N4 | sing | 1.38Å | 1.36Å | |
C4 | C5 | sing | 1.49Å | 1.43Å | |
N4 | H41 | sing | 0.99Å | 1.02Å | |
N4 | H42 | sing | 0.99Å | 1.02Å | |
C5 | C6 | doub | 1.33Å | 1.34Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 54.3° | 118.9° |
OP3 | P | OP1 | 54.3° | 115.3° |
OP3 | P | OP2 | 73.1° | 103.3° |
OP3 | P | O5' | 97.1° | 103.7° |
OP1 | P | OP2 | 120.2° | 115.0° |
OP1 | P | O5' | 107.9° | 114.9° |
OP2 | P | O5' | 104.4° | 102.9° |
P | OP2 | HOP2 | 73.1° | 119.0° |
P | O5' | C5' | 119.6° | 118.5° |
O5' | C5' | C4' | 111.7° | 108.6° |
O5' | C5' | H5' | 111.4° | 109.2° |
O5' | C5' | H5'' | 111.4° | 109.2° |
C4' | C5' | H5' | 111.4° | 110.1° |
C4' | C5' | H5'' | 111.4° | 110.1° |
C5' | C4' | O4' | 112.5° | 108.1° |
C5' | C4' | C3' | 116.7° | 113.3° |
C5' | C4' | H4' | 100.4° | 109.4° |
H5' | C5' | H5'' | 99.0° | 109.6° |
O4' | C4' | C3' | 104.0° | 105.9° |
O4' | C4' | H4' | 114.0° | 107.7° |
C4' | O4' | C1' | 107.8° | 109.1° |
C3' | C4' | H4' | 109.6° | 112.2° |
C4' | C3' | O3' | 111.2° | 107.9° |
C4' | C3' | C2' | 98.7° | 102.1° |
C4' | C3' | H3' | 117.1° | 114.5° |
O4' | C1' | C2' | 106.8° | 106.6° |
O4' | C1' | N1 | 109.9° | 109.0° |
O4' | C1' | H1' | 111.4° | 108.8° |
O3' | C3' | C2' | 114.6° | 110.3° |
O3' | C3' | H3' | 102.0° | 107.9° |
C3' | O3' | HO3' | 111.2° | 106.4° |
C2' | C3' | H3' | 113.9° | 114.0° |
C3' | C2' | O2' | 113.0° | 113.0° |
C3' | C2' | C1' | 99.8° | 102.0° |
C3' | C2' | H2' | 114.5° | 110.1° |
O2' | C2' | C1' | 112.3° | 111.9° |
O2' | C2' | H2' | 102.6° | 108.7° |
C2' | O2' | HO2' | 113.0° | 107.2° |
C1' | C2' | H2' | 115.2° | 111.1° |
C2' | C1' | N1 | 110.7° | 112.7° |
C2' | C1' | H1' | 110.5° | 112.5° |
N1 | C1' | H1' | 107.5° | 107.2° |
C1' | N1 | C2 | 119.7° | 122.0° |
C1' | N1 | C6 | 120.5° | 118.7° |
C2 | N1 | C6 | 119.9° | 119.3° |
N1 | C2 | O2 | 119.9° | 120.9° |
N1 | C2 | N3 | 118.2° | 118.8° |
N1 | C6 | C5 | 121.9° | 122.7° |
N1 | C6 | H6 | 120.4° | 116.1° |
O2 | C2 | N3 | 121.9° | 120.2° |
C2 | N3 | C4 | 120.9° | 121.1° |
N3 | C4 | N4 | 119.3° | 120.2° |
N3 | C4 | C5 | 121.4° | 121.6° |
N4 | C4 | C5 | 119.3° | 118.2° |
C4 | N4 | H41 | 119.3° | 118.0° |
C4 | N4 | H42 | 108.7° | 118.0° |
C4 | C5 | C6 | 117.6° | 116.4° |
C4 | C5 | H5 | 124.0° | 120.5° |
H41 | N4 | H42 | 108.6° | 123.9° |
C6 | C5 | H5 | 118.4° | 123.1° |
C5 | C6 | H6 | 117.7° | 121.2° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 33.5° | 120.1° |
OP3 | P | OP1 | O5' | 85.9° | 120.6° |
OP3 | P | OP2 | O5' | 93.2° | 107.7° |
OP3 | P | OP2 | HOP2 | 180.0° | 78.5° |
OP3 | P | O5' | C5' | 97.7° | 53.2° |
HOP3 | OP3 | P | OP1 | 180.0° | 48.9° |
HOP3 | OP3 | P | OP2 | 29.9° | 77.4° |
HOP3 | OP3 | P | O5' | 73.0° | 175.4° |
OP1 | P | OP2 | O5' | 121.2° | 125.8° |
OP1 | P | OP2 | HOP2 | 152.0° | 48.0° |
OP1 | P | O5' | C5' | 43.0° | 180.0° |
OP2 | P | O5' | C5' | 172.0° | 54.2° |
O5' | P | OP2 | HOP2 | 86.8° | 173.7° |
P | O5' | C5' | C4' | 168.9° | 180.0° |
P | O5' | C5' | H5' | 43.6° | 59.9° |
P | O5' | C5' | H5'' | 65.8° | 59.9° |
O5' | C5' | C4' | H5' | 125.2° | 119.5° |
O5' | C5' | C4' | H5'' | 125.3° | 119.5° |
O5' | C5' | H5' | H5'' | 117.2° | 119.6° |
O5' | C5' | C4' | O4' | 57.8° | 63.4° |
O5' | C5' | C4' | C3' | 62.3° | 179.6° |
O5' | C5' | C4' | H4' | 179.4° | 53.6° |
C4' | C5' | H5' | H5'' | 117.3° | 121.2° |
C5' | C4' | O4' | C3' | 127.2° | 121.7° |
C5' | C4' | O4' | H4' | 113.5° | 118.1° |
C5' | C4' | C3' | H4' | 113.2° | 124.4° |
C5' | C4' | O4' | C1' | 150.8° | 108.7° |
C5' | C4' | C3' | O3' | 71.5° | 157.1° |
C5' | C4' | C3' | C2' | 167.8° | 86.7° |
C5' | C4' | C3' | H3' | 45.2° | 36.9° |
H5' | C5' | C4' | O4' | 67.4° | 177.1° |
H5' | C5' | C4' | C3' | 172.5° | 60.0° |
H5' | C5' | C4' | H4' | 54.2° | 65.9° |
H5'' | C5' | C4' | O4' | 176.9° | 56.2° |
H5'' | C5' | C4' | C3' | 63.0° | 60.9° |
H5'' | C5' | C4' | H4' | 55.3° | 173.1° |
O4' | C4' | C3' | H4' | 122.2° | 117.2° |
O4' | C4' | C3' | O3' | 163.9° | 84.6° |
O4' | C4' | C3' | C2' | 43.2° | 31.6° |
O4' | C4' | C3' | H3' | 79.4° | 155.3° |
C4' | O4' | C1' | C2' | 6.3° | 11.2° |
C4' | O4' | C1' | N1 | 113.9° | 133.1° |
C4' | O4' | C1' | H1' | 127.1° | 110.3° |
C3' | C4' | O4' | C1' | 23.6° | 12.9° |
C4' | C3' | O3' | C2' | 110.8° | 110.7° |
C4' | C3' | O3' | H3' | 125.6° | 124.2° |
C4' | C3' | C2' | H3' | 124.9° | 124.0° |
C4' | C3' | O3' | HO3' | 180.0° | 135.6° |
C4' | C3' | C2' | O2' | 74.2° | 157.4° |
C4' | C3' | C2' | C1' | 45.3° | 37.1° |
C4' | C3' | C2' | H2' | 168.9° | 80.9° |
H4' | C4' | O4' | C1' | 95.7° | 133.2° |
H4' | C4' | C3' | O3' | 41.7° | 32.6° |
H4' | C4' | C3' | C2' | 79.0° | 148.8° |
H4' | C4' | C3' | H3' | 158.4° | 87.5° |
O4' | C1' | C2' | C3' | 33.2° | 30.6° |
O4' | C1' | C2' | O2' | 86.7° | 151.7° |
O4' | C1' | C2' | N1 | 119.6° | 119.5° |
O4' | C1' | C2' | H1' | 121.3° | 119.1° |
O4' | C1' | C2' | H2' | 156.3° | 86.6° |
O4' | C1' | N1 | H1' | 121.4° | 117.6° |
O4' | C1' | N1 | C2 | 165.9° | 147.5° |
O4' | C1' | N1 | C6 | 14.4° | 32.4° |
O3' | C3' | C2' | H3' | 116.9° | 121.5° |
O3' | C3' | C2' | O2' | 44.0° | 42.9° |
O3' | C3' | C2' | C1' | 163.4° | 77.4° |
O3' | C3' | C2' | H2' | 73.0° | 164.6° |
C2' | C3' | O3' | HO3' | 69.2° | 113.7° |
C3' | C2' | O2' | C1' | 112.0° | 114.5° |
C3' | C2' | O2' | H2' | 123.8° | 122.5° |
C3' | C2' | C1' | H2' | 123.1° | 117.2° |
C3' | C2' | O2' | HO2' | 180.0° | 1.1° |
C3' | C2' | C1' | N1 | 86.4° | 150.1° |
C3' | C2' | C1' | H1' | 154.6° | 88.6° |
H3' | C3' | O3' | HO3' | 54.4° | 11.4° |
H3' | C3' | C2' | O2' | 160.9° | 78.5° |
H3' | C3' | C2' | C1' | 79.6° | 161.1° |
H3' | C3' | C2' | H2' | 44.0° | 43.2° |
O2' | C2' | C1' | H2' | 117.0° | 121.7° |
O2' | C2' | C1' | N1 | 153.7° | 88.8° |
O2' | C2' | C1' | H1' | 34.6° | 32.6° |
C1' | C2' | O2' | HO2' | 68.0° | 113.4° |
C2' | C1' | N1 | H1' | 120.9° | 124.3° |
C2' | C1' | N1 | C2 | 76.3° | 94.4° |
C2' | C1' | N1 | C6 | 103.3° | 85.7° |
H2' | C2' | O2' | HO2' | 56.2° | 123.6° |
H2' | C2' | C1' | N1 | 36.7° | 32.9° |
H2' | C2' | C1' | H1' | 82.3° | 154.2° |
C1' | N1 | C2 | C6 | 179.7° | 179.9° |
C1' | N1 | C2 | O2 | 0.1° | 0.0° |
C1' | N1 | C2 | N3 | 179.3° | 180.0° |
C1' | N1 | C6 | C5 | 179.9° | 180.0° |
C1' | N1 | C6 | H6 | 0.1° | 0.1° |
H1' | C1' | N1 | C2 | 44.5° | 29.9° |
H1' | C1' | N1 | C6 | 135.8° | 150.0° |
N1 | C2 | O2 | N3 | 179.3° | 180.0° |
N1 | C2 | N3 | C4 | 1.2° | 0.0° |
C2 | N1 | C6 | C5 | 0.5° | 0.1° |
C2 | N1 | C6 | H6 | 179.5° | 180.0° |
C6 | N1 | C2 | O2 | 179.7° | 179.9° |
C6 | N1 | C2 | N3 | 0.4° | 0.0° |
N1 | C6 | C5 | C4 | 0.5° | 0.1° |
N1 | C6 | C5 | H6 | 180.0° | 179.9° |
N1 | C6 | C5 | H5 | 179.5° | 179.9° |
O2 | C2 | N3 | C4 | 179.5° | 180.0° |
C2 | N3 | C4 | N4 | 179.6° | 180.0° |
C2 | N3 | C4 | C5 | 1.1° | 0.0° |
N3 | C4 | N4 | C5 | 179.3° | 180.0° |
N3 | C4 | N4 | H41 | 180.0° | 72.5° |
N3 | C4 | N4 | H42 | 54.8° | 107.5° |
N3 | C4 | C5 | C6 | 0.2° | 0.0° |
N3 | C4 | C5 | H5 | 179.8° | 180.0° |
C4 | N4 | H41 | H42 | 125.2° | 180.0° |
N4 | C4 | C5 | C6 | 179.5° | 180.0° |
N4 | C4 | C5 | H5 | 0.5° | 0.0° |
C5 | C4 | N4 | H41 | 0.7° | 107.5° |
C5 | C4 | N4 | H42 | 124.5° | 72.5° |
C4 | C5 | C6 | H5 | 180.0° | 180.0° |
C4 | C5 | C6 | H6 | 179.4° | 180.0° |
H5 | C5 | C6 | H6 | 0.6° | 0.0° |