Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

LB9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NE2C1sing1.47Å1.45Å
C1C2sing1.53Å1.49Å
C2C3sing1.53Å1.50Å
C3C4sing1.53Å1.49Å
C4C5sing1.53Å1.50Å
C5N1sing1.47Å1.48Å
C1H1C1sing1.09Å1.10Å
C1H1C2sing1.09Å1.10Å
C2H2C1sing1.09Å1.10Å
C2H2C2sing1.09Å1.10Å
C3H3C1sing1.09Å1.10Å
C3H3C2sing1.09Å1.10Å
C4H4C1sing1.09Å1.10Å
C4H4C2sing1.09Å1.10Å
NE2HE21sing1.01Å1.00Å
NE2HE22sing1.01Å1.00Å
NE2H11sing1.01Å1.00Å
C5H5C1sing1.09Å1.10Å
C5H5C2sing1.09Å1.10Å
N1H1N1sing1.01Å1.00Å
N1H1N2sing1.01Å1.00Å
N1H16sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NE2C1C2115.8°109.5°
NE2C1H1C1107.9°109.5°
NE2C1H1C2107.9°109.5°
C1NE2HE21109.5°109.4°
C1NE2HE22109.5°109.5°
C1NE2H11109.5°109.5°
C1C2C3112.8°109.5°
C2C1H1C1107.8°109.5°
C2C1H1C2107.8°109.4°
C1C2H2C1108.6°109.4°
C1C2H2C2108.7°109.5°
C2C3C4114.6°109.5°
C3C2H2C1108.6°109.5°
C3C2H2C2108.6°109.5°
C2C3H3C1108.2°109.5°
C2C3H3C2108.2°109.5°
C3C4C5112.9°109.5°
C4C3H3C1108.2°109.5°
C4C3H3C2108.2°109.5°
C3C4H4C1108.6°109.5°
C3C4H4C2108.6°109.5°
C4C5N1111.6°109.5°
C5C4H4C1108.6°109.4°
C5C4H4C2108.6°109.5°
C4C5H5C1108.9°109.4°
C4C5H5C2108.9°109.5°
N1C5H5C1108.9°109.5°
N1C5H5C2108.9°109.5°
C5N1H1N1109.5°109.5°
C5N1H1N2109.4°109.4°
C5N1H16109.5°109.5°
H1C1C1H1C2109.5°109.5°
H2C1C2H2C2109.5°109.5°
H3C1C3H3C2109.5°109.5°
H4C1C4H4C2109.5°109.5°
HE21NE2HE22109.4°109.5°
HE21NE2H11109.5°109.5°
HE22NE2H11109.5°109.5°
H5C1C5H5C2109.5°109.5°
H1N1N1H1N2109.5°109.5°
H1N1N1H16109.4°109.5°
H1N2N1H16109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NE2C1C2H1C1120.9°120.0°
NE2C1C2H1C2121.0°120.0°
NE2C1C2C3170.1°180.0°
NE2C1H1C1H1C2117.1°120.0°
NE2C1C2H2C169.4°60.0°
NE2C1C2H2C249.7°60.0°
C1NE2HE21HE22120.0°120.0°
C1NE2HE21H11120.0°120.0°
C1NE2HE22H11120.0°120.0°
C1C2C3H2C1120.5°120.0°
C1C2C3H2C2120.5°120.0°
C1C2C3C4172.9°180.0°
C2C1H1C1H1C2117.1°120.0°
C1C2H2C1H2C2118.5°120.0°
C1C2C3H3C152.2°60.0°
C1C2C3H3C266.3°60.0°
C2C1NE2HE21180.0°180.0°
C2C1NE2HE2260.0°60.0°
C2C1NE2H1160.0°60.0°
C2C3C4H3C1120.8°120.0°
C2C3C4H3C2120.8°120.0°
C2C3C4C5171.8°180.0°
C3C2C1H1C149.2°60.0°
C3C2C1H1C268.9°60.0°
C3C2H2C1H2C2118.5°120.0°
C2C3H3C1H3C2117.7°120.0°
C2C3C4H4C167.7°60.0°
C2C3C4H4C251.3°60.0°
C3C4C5H4C1120.5°120.0°
C3C4C5H4C2120.5°120.0°
C3C4C5N1174.7°180.0°
C4C3C2H2C166.6°60.0°
C4C3C2H2C252.4°60.0°
C4C3H3C1H3C2117.6°120.0°
C3C4H4C1H4C2118.4°120.0°
C3C4C5H5C165.0°60.0°
C3C4C5H5C254.4°60.0°
C4C5N1H5C1120.3°120.0°
C4C5N1H5C2120.3°120.0°
C5C4C3H3C151.0°60.0°
C5C4C3H3C267.4°60.0°
C5C4H4C1H4C2118.5°120.0°
C4C5H5C1H5C2119.0°120.0°
C4C5N1H1N1180.0°60.0°
C4C5N1H1N260.0°180.0°
C4C5N1H1660.0°60.0°
N1C5C4H4C154.2°60.0°
N1C5C4H4C264.8°60.0°
N1C5H5C1H5C2119.0°120.0°
C5N1H1N1H1N2120.0°120.0°
C5N1H1N1H16120.0°120.0°
C5N1H1N2H16120.0°120.0°
H1C1C1C2H2C1169.7°60.0°
H1C1C1C2H2C271.3°180.0°
H1C1C1NE2HE2159.1°60.0°
H1C1C1NE2HE2260.9°180.0°
H1C1C1NE2H11179.1°60.0°
H1C2C1C2H2C151.6°180.0°
H1C2C1C2H2C2170.6°60.0°
H1C2C1NE2HE2159.1°60.0°
H1C2C1NE2HE22179.1°60.0°
H1C2C1NE2H1160.9°180.0°
H2C1C2C3H3C1172.6°180.0°
H2C1C2C3H3C254.1°60.0°
H2C2C2C3H3C168.3°60.0°
H2C2C2C3H3C2173.2°180.0°
H3C1C3C4H4C1171.6°180.0°
H3C1C3C4H4C269.5°60.0°
H3C2C3C4H4C153.1°60.0°
H3C2C3C4H4C2172.1°180.0°
H4C1C4C5H5C1174.5°180.0°
H4C1C4C5H5C266.1°60.0°
H4C2C4C5H5C155.5°60.0°
H4C2C4C5H5C2174.9°180.0°
HE21NE2HE22H11120.0°120.0°
H5C1C5N1H1N159.7°60.0°
H5C1C5N1H1N2179.7°60.0°
H5C1C5N1H1660.3°180.0°
H5C2C5N1H1N159.7°180.0°
H5C2C5N1H1N260.3°60.0°
H5C2C5N1H16179.7°60.0°
H1N1N1H1N2H16120.0°120.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon