LAQ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2P	P	sing	1.62Å	1.51Å
O2P	HO2P	sing	0.98Å	0.95Å
P	O1P	doub	1.50Å	1.50Å
P	O5'	sing	1.62Å	1.60Å
P	O3P	sing	1.62Å	1.61Å
O3P	C10	sing	1.36Å	1.45Å
C10	O10	doub	1.22Å	1.23Å
C10	C11	sing	1.51Å	1.52Å
C11	C12	sing	1.53Å	1.52Å
C11	H111	sing	1.10Å	1.10Å
C11	H112	sing	1.10Å	1.10Å
C12	C13	sing	1.53Å	1.52Å
C12	H121	sing	1.10Å	1.10Å
C12	H122	sing	1.10Å	1.10Å
C13	C14	sing	1.53Å	1.52Å
C13	H131	sing	1.10Å	1.10Å
C13	H132	sing	1.10Å	1.10Å
C14	C15	sing	1.52Å	1.53Å
C14	H141	sing	1.10Å	1.10Å
C14	H142	sing	1.10Å	1.10Å
C15	C16	sing	1.53Å	1.53Å
C15	S15	sing	1.82Å	1.76Å
C15	H15	sing	1.10Å	1.10Å
S15	S17	sing	2.05Å	2.02Å
S17	C17	sing	1.81Å	1.76Å
C17	C16	sing	1.52Å	1.53Å
C17	H171	sing	1.09Å	1.10Å
C17	H172	sing	1.09Å	1.10Å
C16	H161	sing	1.10Å	1.10Å
C16	H162	sing	1.10Å	1.10Å
O5'	C5'	sing	1.42Å	1.43Å
C5'	C4'	sing	1.52Å	1.53Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.10Å	1.10Å
C3'	C2'	sing	1.52Å	1.52Å
C3'	O3'	sing	1.41Å	1.43Å
C3'	H3'	sing	1.10Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.43Å
C2'	C1'	sing	1.53Å	1.51Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	O4'	sing	1.44Å	1.43Å
C1'	N9	sing	1.46Å	1.48Å
C1'	H1'	sing	1.09Å	1.10Å
N9	C4	sing	1.37Å	1.32Å	Aromatic
N9	C8	sing	1.37Å	1.35Å	Aromatic
C8	N7	doub	1.32Å	1.35Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
N7	C5	sing	1.37Å	1.35Å	Aromatic
C5	C4	doub	1.39Å	1.47Å	Aromatic
C5	C6	sing	1.39Å	1.48Å	Aromatic
C6	N1	doub	1.36Å	1.35Å	Aromatic
C6	N6	sing	1.41Å	1.36Å
N6	HN61	sing	1.00Å	1.00Å
N6	HN62	sing	1.00Å	1.00Å
N1	C2	sing	1.35Å	1.34Å	Aromatic
C2	N3	doub	1.35Å	1.34Å	Aromatic
C2	H2	sing	1.09Å	1.08Å
N3	C4	sing	1.34Å	1.36Å	Aromatic

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O2P	HO2P	109.5°	118.9°
O2P	P	O1P	120.4°	114.7°
O2P	P	O5'	111.1°	103.7°
O2P	P	O3P	103.9°	102.6°
O1P	P	O5'	108.3°	115.9°
O1P	P	O3P	109.9°	114.7°
O5'	P	O3P	101.5°	103.6°
P	O5'	C5'	122.8°	118.5°
P	O3P	C10	125.2°	124.3°
O3P	C10	O10	120.4°	124.7°
O3P	C10	C11	115.8°	109.4°
O10	C10	C11	123.8°	125.8°
C10	C11	C12	112.6°	111.9°
C10	C11	H111	108.4°	108.1°
C10	C11	H112	107.7°	108.2°
C12	C11	H111	108.4°	109.7°
C12	C11	H112	107.7°	109.8°
C11	C12	C13	110.3°	111.4°
C11	C12	H121	109.2°	109.7°
C11	C12	H122	109.0°	109.6°
H111	C11	H112	111.9°	109.1°
C13	C12	H121	109.2°	109.7°
C13	C12	H122	109.0°	109.7°
C12	C13	C14	110.9°	111.3°
C12	C13	H131	109.0°	109.6°
C12	C13	H132	108.7°	109.5°
H121	C12	H122	110.1°	106.6°
C14	C13	H131	109.0°	109.6°
C14	C13	H132	108.7°	109.6°
C13	C14	C15	112.1°	111.5°
C13	C14	H141	108.6°	109.9°
C13	C14	H142	108.0°	109.9°
H131	C13	H132	110.6°	107.1°
C15	C14	H141	108.6°	109.1°
C15	C14	H142	108.0°	109.1°
C14	C15	C16	110.1°	112.2°
C14	C15	S15	114.6°	110.8°
C14	C15	H15	104.0°	109.1°
H141	C14	H142	111.6°	107.2°
C16	C15	S15	104.8°	106.3°
C16	C15	H15	114.0°	110.2°
C15	C16	C17	112.8°	109.7°
C15	C16	H161	108.4°	110.1°
C15	C16	H162	107.6°	110.9°
S15	C15	H15	109.5°	108.1°
C15	S15	S17	93.0°	97.2°
S15	S17	C17	98.2°	97.0°
S17	C17	C16	108.5°	106.8°
S17	C17	H171	109.8°	110.3°
S17	C17	H172	110.0°	109.2°
C16	C17	H171	109.8°	111.2°
C16	C17	H172	110.0°	111.0°
C17	C16	H161	108.4°	109.7°
C17	C16	H162	107.7°	110.2°
H171	C17	H172	108.7°	108.3°
H161	C16	H162	112.1°	106.2°
O5'	C5'	C4'	107.4°	109.0°
O5'	C5'	H5'1	110.2°	108.8°
O5'	C5'	H5'2	110.6°	108.8°
C4'	C5'	H5'1	110.2°	110.5°
C4'	C5'	H5'2	110.7°	110.6°
C5'	C4'	O4'	110.2°	109.8°
C5'	C4'	C3'	114.5°	113.4°
C5'	C4'	H4'	103.9°	108.7°
H5'1	C5'	H5'2	107.8°	109.1°
O4'	C4'	C3'	104.1°	105.2°
O4'	C4'	H4'	114.4°	108.3°
C4'	O4'	C1'	110.6°	108.3°
C3'	C4'	H4'	110.1°	111.3°
C4'	C3'	C2'	102.0°	102.3°
C4'	C3'	O3'	111.4°	112.1°
C4'	C3'	H3'	114.3°	110.3°
C2'	C3'	O3'	112.9°	113.5°
C2'	C3'	H3'	112.8°	109.5°
C3'	C2'	O2'	108.8°	111.2°
C3'	C2'	C1'	102.0°	102.8°
C3'	C2'	H2'	113.0°	112.6°
O3'	C3'	H3'	103.8°	109.0°
C3'	O3'	HO3'	109.5°	106.4°
O2'	C2'	C1'	104.4°	109.3°
O2'	C2'	H2'	111.0°	106.9°
C2'	O2'	HO2'	109.5°	107.3°
C1'	C2'	H2'	117.0°	114.0°
C2'	C1'	O4'	106.0°	107.6°
C2'	C1'	N9	114.3°	113.6°
C2'	C1'	H1'	107.9°	112.5°
O4'	C1'	N9	106.9°	109.5°
O4'	C1'	H1'	115.1°	108.3°
N9	C1'	H1'	106.9°	105.2°
C1'	N9	C4	122.6°	126.9°
C1'	N9	C8	128.7°	126.2°
C4	N9	C8	108.7°	107.0°
N9	C4	C5	106.5°	105.2°
N9	C4	N3	134.0°	127.6°
N9	C8	N7	110.9°	112.2°
N9	C8	H8	124.6°	122.2°
N7	C8	H8	124.5°	125.6°
C8	N7	C5	107.2°	104.8°
N7	C5	C4	106.7°	110.7°
N7	C5	C6	137.0°	132.4°
C4	C5	C6	116.3°	116.9°
C5	C4	N3	119.5°	127.2°
C5	C6	N1	117.7°	119.1°
C5	C6	N6	121.7°	120.8°
N1	C6	N6	120.6°	120.2°
C6	N1	C2	123.0°	117.5°
C6	N6	HN61	109.5°	119.4°
C6	N6	HN62	109.5°	119.4°
HN61	N6	HN62	109.5°	120.9°
N1	C2	N3	122.2°	128.8°
N1	C2	H2	118.9°	115.5°
N3	C2	H2	118.9°	115.7°
C2	N3	C4	121.3°	110.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2P	P	O1P	O5'	129.4°	120.9°
O2P	P	O1P	O3P	120.6°	118.4°
O2P	P	O5'	O3P	110.0°	106.9°
O2P	P	O3P	C10	178.6°	174.9°
O2P	P	O5'	C5'	41.3°	53.4°
HO2P	O2P	P	O1P	61.4°	48.0°
HO2P	O2P	P	O5'	66.7°	79.3°
HO2P	O2P	P	O3P	175.1°	173.1°
O1P	P	O5'	O3P	115.7°	126.5°
O1P	P	O3P	C10	48.4°	60.1°
O1P	P	O5'	C5'	175.7°	180.0°
O5'	P	O3P	C10	66.1°	67.2°
P	O5'	C5'	C4'	159.2°	150.0°
P	O5'	C5'	H5'1	39.2°	29.4°
P	O5'	C5'	H5'2	79.9°	89.4°
P	O3P	C10	O10	18.1°	0.2°
P	O3P	C10	C11	162.6°	180.0°
O3P	P	O5'	C5'	68.7°	53.5°
O3P	C10	O10	C11	179.3°	179.8°
O3P	C10	C11	C12	166.3°	178.9°
O3P	C10	C11	H111	73.7°	60.1°
O3P	C10	C11	H112	47.7°	57.9°
O10	C10	C11	C12	13.0°	1.0°
O10	C10	C11	H111	107.0°	120.0°
O10	C10	C11	H112	131.7°	122.0°
C10	C11	C12	H111	120.0°	120.0°
C10	C11	C12	H112	118.6°	120.1°
C10	C11	H111	H112	118.7°	117.4°
C10	C11	C12	C13	161.2°	178.4°
C10	C11	C12	H121	41.1°	60.0°
C10	C11	C12	H122	79.2°	56.8°
C12	C11	H111	H112	118.7°	120.3°
C11	C12	C13	H121	120.0°	121.6°
C11	C12	C13	H122	119.6°	121.6°
C11	C12	H121	H122	119.7°	118.6°
C11	C12	C13	C14	179.2°	178.7°
C11	C12	C13	H131	59.2°	60.0°
C11	C12	C13	H132	61.4°	57.3°
H111	C11	C12	C13	78.8°	58.3°
H111	C11	C12	H121	161.1°	180.0°
H111	C11	C12	H122	40.8°	63.3°
H112	C11	C12	C13	42.5°	61.5°
H112	C11	C12	H121	77.5°	60.1°
H112	C11	C12	H122	162.1°	176.9°
C13	C12	H121	H122	119.6°	118.7°
C12	C13	C14	H131	120.0°	121.4°
C12	C13	C14	H132	119.4°	121.3°
C12	C13	H131	H132	119.4°	118.8°
C12	C13	C14	C15	176.9°	178.6°
C12	C13	C14	H141	56.9°	57.5°
C12	C13	C14	H142	64.2°	60.2°
H121	C12	C13	C14	60.8°	57.0°
H121	C12	C13	H131	179.3°	178.4°
H121	C12	C13	H132	58.6°	64.3°
H122	C12	C13	C14	59.6°	59.8°
H122	C12	C13	H131	60.4°	61.6°
H122	C12	C13	H132	178.9°	178.8°
C14	C13	H131	H132	119.4°	118.8°
C13	C14	C15	H141	120.0°	121.6°
C13	C14	C15	H142	118.8°	121.6°
C13	C14	H141	H142	118.9°	119.4°
C13	C14	C15	C16	177.4°	61.5°
C13	C14	C15	S15	64.8°	179.9°
C13	C14	C15	H15	54.8°	60.9°
H131	C13	C14	C15	63.1°	60.0°
H131	C13	C14	H141	176.9°	178.9°
H131	C13	C14	H142	55.8°	61.1°
H132	C13	C14	C15	57.5°	57.3°
H132	C13	C14	H141	62.5°	63.8°
H132	C13	C14	H142	176.4°	178.4°
C15	C14	H141	H142	118.9°	118.0°
C14	C15	C16	S15	123.8°	121.2°
C14	C15	C16	H15	116.5°	121.8°
C14	C15	S15	H15	116.5°	119.5°
C14	C15	S15	S17	166.1°	148.0°
C14	C15	C16	C17	170.1°	170.7°
C14	C15	C16	H161	50.1°	68.5°
C14	C15	C16	H162	71.3°	48.7°
H141	C14	C15	C16	62.6°	60.0°
H141	C14	C15	S15	55.2°	58.6°
H141	C14	C15	H15	174.8°	177.5°
H142	C14	C15	C16	58.6°	176.9°
H142	C14	C15	S15	176.4°	58.2°
H142	C14	C15	H15	64.1°	60.7°
C16	C15	S15	H15	122.7°	118.4°
C16	C15	S15	S17	45.3°	25.9°
C15	C16	C17	S17	20.3°	49.9°
C15	C16	C17	H161	120.0°	121.0°
C15	C16	C17	H162	118.6°	122.4°
C15	C16	C17	H171	140.4°	170.4°
C15	C16	C17	H172	100.0°	69.0°
C15	C16	H161	H162	118.7°	120.1°
C15	S15	S17	C17	31.7°	0.3°
S15	C15	C16	C17	46.4°	49.5°
S15	C15	C16	H161	73.6°	170.3°
S15	C15	C16	H162	165.0°	72.5°
H15	C15	S15	S17	77.4°	92.4°
H15	C15	C16	C17	73.3°	67.5°
H15	C15	C16	H161	166.7°	53.3°
H15	C15	C16	H162	45.3°	170.6°
S15	S17	C17	C16	10.5°	26.6°
S15	S17	C17	H171	109.5°	147.6°
S15	S17	C17	H172	130.9°	93.5°
S17	C17	C16	H171	120.0°	120.4°
S17	C17	C16	H172	120.4°	118.9°
S17	C17	H171	H172	120.4°	119.4°
S17	C17	C16	H161	99.7°	171.0°
S17	C17	C16	H162	138.9°	72.4°
C16	C17	H171	H172	120.4°	122.3°
C17	C16	H161	H162	118.6°	119.0°
H171	C17	C16	H161	20.4°	68.6°
H171	C17	C16	H162	101.0°	48.0°
H172	C17	C16	H161	139.9°	52.1°
H172	C17	C16	H162	18.6°	168.7°
O5'	C5'	C4'	H5'1	120.0°	119.5°
O5'	C5'	C4'	H5'2	120.8°	119.5°
O5'	C5'	H5'1	H5'2	120.8°	118.5°
O5'	C5'	C4'	O4'	69.3°	62.1°
O5'	C5'	C4'	C3'	173.8°	179.6°
O5'	C5'	C4'	H4'	53.7°	56.2°
C4'	C5'	H5'1	H5'2	120.9°	121.8°
C5'	C4'	O4'	C3'	123.2°	122.4°
C5'	C4'	O4'	H4'	116.7°	118.5°
C5'	C4'	C3'	H4'	116.6°	122.9°
C5'	C4'	C3'	C2'	155.9°	157.1°
C5'	C4'	C3'	O3'	83.4°	81.0°
C5'	C4'	C3'	H3'	33.8°	40.7°
C5'	C4'	O4'	C1'	142.5°	148.9°
H5'1	C5'	C4'	O4'	170.6°	57.4°
H5'1	C5'	C4'	C3'	53.7°	60.0°
H5'1	C5'	C4'	H4'	66.4°	175.7°
H5'2	C5'	C4'	O4'	51.5°	178.4°
H5'2	C5'	C4'	C3'	65.4°	61.0°
H5'2	C5'	C4'	H4'	174.5°	63.3°
O4'	C4'	C3'	H4'	123.0°	117.1°
O4'	C4'	C3'	C2'	35.6°	37.1°
O4'	C4'	C3'	O3'	156.3°	159.0°
O4'	C4'	C3'	H3'	86.5°	79.3°
C4'	O4'	C1'	C2'	5.1°	5.1°
C4'	O4'	C1'	N9	117.2°	128.9°
C4'	O4'	C1'	H1'	124.2°	116.8°
C4'	C3'	C2'	O3'	119.6°	121.0°
C4'	C3'	C2'	H3'	123.1°	117.0°
C4'	C3'	O3'	H3'	123.4°	122.4°
C4'	C3'	O3'	HO3'	69.9°	141.1°
C4'	C3'	C2'	O2'	71.9°	84.0°
C4'	C3'	C2'	C1'	37.9°	32.8°
C4'	C3'	C2'	H2'	164.4°	156.0°
C3'	C4'	O4'	C1'	19.3°	26.5°
H4'	C4'	C3'	C2'	87.4°	80.0°
H4'	C4'	C3'	O3'	33.2°	41.9°
H4'	C4'	C3'	H3'	150.4°	163.6°
H4'	C4'	O4'	C1'	100.9°	92.6°
C2'	C3'	O3'	H3'	122.5°	122.3°
C2'	C3'	O3'	HO3'	44.2°	103.6°
C3'	C2'	O2'	C1'	108.2°	112.8°
C3'	C2'	O2'	H2'	125.0°	123.4°
C3'	C2'	C1'	H2'	123.8°	122.2°
C3'	C2'	O2'	HO2'	123.4°	146.2°
C3'	C2'	C1'	O4'	27.2°	18.1°
C3'	C2'	C1'	N9	90.2°	103.2°
C3'	C2'	C1'	H1'	151.0°	137.3°
O3'	C3'	C2'	O2'	47.7°	37.0°
O3'	C3'	C2'	C1'	157.5°	153.8°
O3'	C3'	C2'	H2'	76.0°	83.1°
H3'	C3'	O3'	HO3'	166.7°	18.7°
H3'	C3'	C2'	O2'	165.0°	159.0°
H3'	C3'	C2'	C1'	85.2°	84.2°
H3'	C3'	C2'	H2'	41.2°	39.0°
O2'	C2'	C1'	H2'	123.0°	119.6°
O2'	C2'	C1'	O4'	85.9°	100.1°
O2'	C2'	C1'	N9	156.6°	138.6°
O2'	C2'	C1'	H1'	37.8°	19.1°
C1'	C2'	O2'	HO2'	15.2°	33.5°
C2'	C1'	O4'	N9	122.3°	123.9°
C2'	C1'	O4'	H1'	119.1°	121.9°
C2'	C1'	N9	H1'	119.3°	123.5°
C2'	C1'	N9	C4	171.1°	123.6°
C2'	C1'	N9	C8	10.7°	56.4°
H2'	C2'	O2'	HO2'	111.7°	90.4°
H2'	C2'	C1'	O4'	151.1°	140.4°
H2'	C2'	C1'	N9	33.6°	19.0°
H2'	C2'	C1'	H1'	85.2°	100.4°
O4'	C1'	N9	H1'	123.8°	116.2°
O4'	C1'	N9	C4	72.0°	116.1°
O4'	C1'	N9	C8	106.3°	63.8°
C1'	N9	C4	C8	178.6°	179.9°
C1'	N9	C8	N7	179.0°	180.0°
C1'	N9	C8	H8	1.0°	0.1°
C1'	N9	C4	C5	178.7°	179.9°
C1'	N9	C4	N3	1.2°	0.1°
H1'	C1'	N9	C4	51.8°	0.1°
H1'	C1'	N9	C8	130.0°	180.0°
C4	N9	C8	N7	0.6°	0.0°
C4	N9	C8	H8	179.5°	180.0°
N9	C4	C5	N7	0.3°	0.0°
N9	C4	C5	N3	179.9°	180.0°
N9	C4	C5	C6	179.7°	180.0°
N9	C4	N3	C2	179.8°	180.0°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.8°	0.0°
C8	N9	C4	C5	0.1°	0.0°
C8	N9	C4	N3	179.7°	179.9°
C8	N7	C5	C4	0.7°	0.1°
C8	N7	C5	C6	179.8°	180.0°
H8	C8	N7	C5	179.2°	180.0°
N7	C5	C4	C6	179.3°	179.9°
N7	C5	C6	N1	179.2°	179.9°
N7	C5	C6	N6	0.9°	0.1°
N7	C5	C4	N3	179.8°	179.9°
C4	C5	C6	N1	0.2°	0.0°
C4	C5	C6	N6	180.0°	180.0°
C5	C4	N3	C2	0.3°	0.0°
C5	C6	N1	N6	179.9°	180.0°
C5	C6	N6	HN61	92.4°	18.1°
C5	C6	N6	HN62	147.6°	155.6°
C5	C6	N1	C2	0.3°	0.0°
C6	C5	C4	N3	0.4°	0.0°
N1	C6	N6	HN61	87.7°	161.9°
N1	C6	N6	HN62	32.3°	24.4°
C6	N1	C2	N3	0.5°	0.0°
C6	N1	C2	H2	179.5°	180.0°
C6	N6	HN61	HN62	120.0°	173.6°
N6	C6	N1	C2	179.6°	180.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.2°	0.0°
H2	C2	N3	C4	179.8°	179.9°

Definition date:	2006-12-27
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB