L9X
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | O11 | sing | 1.34Å | 1.26Å | |
| C1 | CA1 | sing | 1.51Å | 1.47Å | |
| N1 | HN1 | sing | 1.01Å | 1.00Å | |
| C2 | CA2 | sing | 1.51Å | 1.50Å | |
| N2 | CD1 | sing | 1.35Å | 1.34Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| O2 | C2 | doub | 1.21Å | 1.23Å | |
| C3 | CA3 | sing | 1.51Å | 1.51Å | |
| C3 | O32 | sing | 1.34Å | 1.27Å | |
| N3 | C2 | sing | 1.35Å | 1.33Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C1' | H1'B | sing | 1.09Å | 1.10Å | |
| N1' | C2' | sing | 1.47Å | 1.46Å | |
| O11 | HO11 | sing | 0.97Å | 0.95Å | |
| O12 | C1 | doub | 1.21Å | 1.28Å | |
| C2' | C1' | sing | 1.53Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C3' | N1' | sing | 1.34Å | 1.34Å | |
| C3' | O1' | doub | 1.21Å | 1.22Å | |
| O31 | C3 | doub | 1.21Å | 1.26Å | |
| O32 | HO32 | sing | 0.97Å | 0.95Å | |
| C4' | C3' | sing | 1.51Å | 1.51Å | |
| C4' | C5' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C4' | H4'A | sing | 1.09Å | 1.10Å | |
| C5' | C6' | sing | 1.51Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C6' | N1' | sing | 1.34Å | 1.28Å | |
| C6' | O2' | doub | 1.21Å | 1.23Å | |
| CA1 | N1 | sing | 1.47Å | 1.27Å | |
| CA2 | N2 | sing | 1.47Å | 1.46Å | |
| CA2 | CB2 | sing | 1.53Å | 1.53Å | |
| CA2 | HA2 | sing | 1.09Å | 1.10Å | |
| CA3 | N3 | sing | 1.46Å | 1.45Å | |
| CA3 | HA3 | sing | 1.09Å | 1.10Å | |
| CA3 | HA3A | sing | 1.09Å | 1.10Å | |
| CB1 | CA1 | sing | 1.53Å | 1.51Å | |
| CB1 | CG1 | sing | 1.53Å | 1.52Å | |
| CB1 | HB1 | sing | 1.09Å | 1.10Å | |
| CB1 | HB1A | sing | 1.09Å | 1.10Å | |
| CB2 | SG2 | sing | 1.81Å | 1.78Å | |
| CB2 | HB2 | sing | 1.09Å | 1.10Å | |
| CB2 | HB2A | sing | 1.09Å | 1.10Å | |
| CD1 | CG1 | sing | 1.51Å | 1.51Å | |
| OE1 | CD1 | doub | 1.21Å | 1.23Å | |
| CG1 | HG1 | sing | 1.09Å | 1.10Å | |
| CG1 | HG1A | sing | 1.09Å | 1.10Å | |
| SG2 | C5' | sing | 1.81Å | 1.78Å | |
| N1 | H23 | sing | 1.01Å | 1.00Å | |
| CA1 | H24 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O11 | C1 | CA1 | 116.0° | 120.0° |
| C1 | O11 | HO11 | 109.5° | 117.0° |
| O11 | C1 | O12 | 122.7° | 120.0° |
| CA1 | C1 | O12 | 121.3° | 120.0° |
| C1 | CA1 | N1 | 118.3° | 109.5° |
| C1 | CA1 | CB1 | 119.7° | 109.5° |
| C1 | CA1 | H24 | 103.4° | 109.5° |
| HN1 | N1 | CA1 | 109.5° | 111.0° |
| HN1 | N1 | H23 | 109.5° | 111.0° |
| CA2 | C2 | O2 | 122.0° | 120.0° |
| CA2 | C2 | N3 | 115.4° | 120.0° |
| C2 | CA2 | N2 | 111.8° | 109.5° |
| C2 | CA2 | CB2 | 111.7° | 109.5° |
| C2 | CA2 | HA2 | 105.3° | 109.5° |
| CD1 | N2 | HN2 | 118.7° | 120.0° |
| CD1 | N2 | CA2 | 122.7° | 120.0° |
| N2 | CD1 | CG1 | 115.9° | 120.0° |
| N2 | CD1 | OE1 | 124.0° | 120.0° |
| HN2 | N2 | CA2 | 118.7° | 120.0° |
| O2 | C2 | N3 | 122.6° | 120.0° |
| CA3 | C3 | O32 | 118.1° | 120.0° |
| CA3 | C3 | O31 | 117.8° | 120.0° |
| C3 | CA3 | N3 | 106.1° | 109.5° |
| C3 | CA3 | HA3 | 110.6° | 109.5° |
| C3 | CA3 | HA3A | 110.6° | 109.5° |
| O32 | C3 | O31 | 124.1° | 120.0° |
| C3 | O32 | HO32 | 109.5° | 116.9° |
| C2 | N3 | HN3 | 117.8° | 120.0° |
| C2 | N3 | CA3 | 124.3° | 120.0° |
| HN3 | N3 | CA3 | 117.9° | 119.9° |
| H1' | C1' | H1'A | 109.4° | 109.5° |
| H1' | C1' | H1'B | 109.4° | 109.5° |
| H1' | C1' | C2' | 109.5° | 109.5° |
| H1'A | C1' | H1'B | 109.5° | 109.5° |
| H1'A | C1' | C2' | 109.5° | 109.5° |
| H1'B | C1' | C2' | 109.5° | 109.4° |
| N1' | C2' | C1' | 110.2° | 109.5° |
| N1' | C2' | H2' | 109.2° | 109.5° |
| N1' | C2' | H2'A | 109.2° | 109.4° |
| C2' | N1' | C3' | 124.3° | 122.7° |
| C2' | N1' | C6' | 124.8° | 122.8° |
| C1' | C2' | H2' | 109.2° | 109.5° |
| C1' | C2' | H2'A | 109.2° | 109.5° |
| H2' | C2' | H2'A | 109.7° | 109.5° |
| N1' | C3' | O1' | 126.3° | 125.5° |
| N1' | C3' | C4' | 111.5° | 109.2° |
| C3' | N1' | C6' | 110.9° | 114.5° |
| O1' | C3' | C4' | 122.2° | 125.3° |
| C3' | C4' | C5' | 100.6° | 103.5° |
| C3' | C4' | H4' | 112.5° | 110.6° |
| C3' | C4' | H4'A | 112.5° | 110.6° |
| C5' | C4' | H4' | 112.5° | 110.6° |
| C5' | C4' | H4'A | 112.6° | 110.6° |
| C4' | C5' | C6' | 102.7° | 103.5° |
| C4' | C5' | H5' | 113.4° | 110.6° |
| C4' | C5' | SG2 | 111.9° | 110.6° |
| H4' | C4' | H4'A | 106.2° | 110.7° |
| C6' | C5' | H5' | 112.9° | 110.8° |
| C5' | C6' | N1' | 112.4° | 109.2° |
| C5' | C6' | O2' | 122.0° | 125.3° |
| C6' | C5' | SG2 | 112.4° | 110.4° |
| H5' | C5' | SG2 | 103.8° | 110.7° |
| N1' | C6' | O2' | 125.5° | 125.4° |
| N1 | CA1 | CB1 | 121.5° | 109.5° |
| CA1 | N1 | H23 | 109.4° | 111.0° |
| N1 | CA1 | H24 | 91.8° | 109.4° |
| N2 | CA2 | CB2 | 106.1° | 109.5° |
| N2 | CA2 | HA2 | 111.0° | 109.5° |
| CB2 | CA2 | HA2 | 111.1° | 109.5° |
| CA2 | CB2 | SG2 | 109.4° | 109.5° |
| CA2 | CB2 | HB2 | 109.5° | 109.5° |
| CA2 | CB2 | HB2A | 109.5° | 109.5° |
| N3 | CA3 | HA3 | 110.6° | 109.5° |
| N3 | CA3 | HA3A | 110.6° | 109.5° |
| HA3 | CA3 | HA3A | 108.3° | 109.4° |
| CA1 | CB1 | CG1 | 115.6° | 109.5° |
| CA1 | CB1 | HB1 | 107.5° | 109.5° |
| CA1 | CB1 | HB1A | 107.5° | 109.5° |
| CB1 | CA1 | H24 | 82.5° | 109.5° |
| CG1 | CB1 | HB1 | 107.5° | 109.5° |
| CG1 | CB1 | HB1A | 107.5° | 109.5° |
| CB1 | CG1 | CD1 | 105.1° | 109.5° |
| CB1 | CG1 | HG1 | 110.9° | 109.4° |
| CB1 | CG1 | HG1A | 110.9° | 109.5° |
| HB1 | CB1 | HB1A | 111.4° | 109.5° |
| SG2 | CB2 | HB2 | 109.5° | 109.4° |
| SG2 | CB2 | HB2A | 109.5° | 109.5° |
| CB2 | SG2 | C5' | 121.6° | 103.0° |
| HB2 | CB2 | HB2A | 109.4° | 109.5° |
| CG1 | CD1 | OE1 | 120.1° | 120.0° |
| CD1 | CG1 | HG1 | 110.9° | 109.5° |
| CD1 | CG1 | HG1A | 110.9° | 109.5° |
| HG1 | CG1 | HG1A | 108.0° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O11 | C1 | CA1 | O12 | 179.5° | 179.8° |
| O11 | C1 | CA1 | N1 | 29.0° | 160.0° |
| O11 | C1 | CA1 | CB1 | 142.6° | 80.0° |
| O11 | C1 | CA1 | H24 | 128.5° | 40.0° |
| C1 | CA1 | N1 | HN1 | 180.0° | 60.0° |
| CA1 | C1 | O11 | HO11 | 179.5° | 180.0° |
| C1 | CA1 | N1 | CB1 | 171.5° | 120.0° |
| C1 | CA1 | N1 | H24 | 106.3° | 120.0° |
| C1 | CA1 | CB1 | H24 | 101.2° | 120.0° |
| C1 | CA1 | CB1 | CG1 | 178.0° | 175.0° |
| C1 | CA1 | CB1 | HB1 | 57.9° | 65.0° |
| C1 | CA1 | CB1 | HB1A | 62.1° | 55.0° |
| C1 | CA1 | N1 | H23 | 60.0° | 176.0° |
| HN1 | N1 | CA1 | H23 | 120.0° | 123.9° |
| HN1 | N1 | CA1 | CB1 | 8.5° | 60.0° |
| HN1 | N1 | CA1 | H24 | 73.8° | 180.0° |
| C2 | CA2 | N2 | CD1 | 93.7° | 85.0° |
| C2 | CA2 | N2 | HN2 | 86.3° | 95.0° |
| CA2 | C2 | O2 | N3 | 178.7° | 180.0° |
| CA2 | C2 | N3 | HN3 | 1.5° | 0.0° |
| C2 | CA2 | N2 | CB2 | 122.0° | 120.0° |
| C2 | CA2 | N2 | HA2 | 117.2° | 120.0° |
| C2 | CA2 | CB2 | HA2 | 117.2° | 120.0° |
| CA2 | C2 | N3 | CA3 | 178.5° | 180.0° |
| C2 | CA2 | CB2 | SG2 | 164.9° | 180.0° |
| C2 | CA2 | CB2 | HB2 | 75.1° | 60.0° |
| C2 | CA2 | CB2 | HB2A | 44.9° | 60.0° |
| CD1 | N2 | HN2 | CA2 | 180.0° | 180.0° |
| CD1 | N2 | CA2 | CB2 | 144.3° | 155.0° |
| CD1 | N2 | CA2 | HA2 | 23.5° | 35.0° |
| N2 | CD1 | CG1 | CB1 | 120.2° | 180.0° |
| N2 | CD1 | CG1 | OE1 | 179.3° | 180.0° |
| N2 | CD1 | CG1 | HG1 | 119.8° | 60.0° |
| N2 | CD1 | CG1 | HG1A | 0.3° | 60.0° |
| HN2 | N2 | CA2 | CB2 | 35.7° | 25.0° |
| HN2 | N2 | CA2 | HA2 | 156.5° | 145.0° |
| HN2 | N2 | CD1 | CG1 | 0.2° | 0.0° |
| HN2 | N2 | CD1 | OE1 | 179.5° | 180.0° |
| O2 | C2 | N3 | HN3 | 177.2° | 180.0° |
| O2 | C2 | CA2 | N2 | 44.7° | 0.0° |
| O2 | C2 | CA2 | CB2 | 74.0° | 120.0° |
| O2 | C2 | CA2 | HA2 | 165.3° | 120.0° |
| O2 | C2 | N3 | CA3 | 2.8° | 0.1° |
| CA3 | C3 | O32 | O31 | 178.3° | 180.0° |
| C3 | CA3 | N3 | C2 | 68.5° | 180.0° |
| C3 | CA3 | N3 | HN3 | 111.5° | 0.0° |
| CA3 | C3 | O32 | HO32 | 178.4° | 180.0° |
| C3 | CA3 | N3 | HA3 | 120.0° | 120.1° |
| C3 | CA3 | N3 | HA3A | 120.0° | 120.0° |
| C3 | CA3 | HA3 | HA3A | 121.4° | 119.9° |
| O32 | C3 | CA3 | N3 | 38.6° | 180.0° |
| O32 | C3 | CA3 | HA3 | 81.4° | 59.9° |
| O32 | C3 | CA3 | HA3A | 158.6° | 60.0° |
| C2 | N3 | HN3 | CA3 | 180.0° | 180.0° |
| N3 | C2 | CA2 | N2 | 134.0° | 180.0° |
| N3 | C2 | CA2 | CB2 | 107.3° | 60.0° |
| N3 | C2 | CA2 | HA2 | 13.4° | 60.0° |
| C2 | N3 | CA3 | HA3 | 171.5° | 59.9° |
| C2 | N3 | CA3 | HA3A | 51.5° | 60.0° |
| HN3 | N3 | CA3 | HA3 | 8.5° | 120.0° |
| HN3 | N3 | CA3 | HA3A | 128.5° | 120.0° |
| H1' | C1' | H1'A | H1'B | 120.0° | 120.0° |
| H1' | C1' | H1'A | C2' | 120.0° | 120.1° |
| H1' | C1' | H1'B | C2' | 120.0° | 120.0° |
| H1' | C1' | C2' | N1' | 180.0° | 60.0° |
| H1' | C1' | C2' | H2' | 60.0° | 60.0° |
| H1' | C1' | C2' | H2'A | 60.0° | 180.0° |
| H1'A | C1' | H1'B | C2' | 120.0° | 120.0° |
| H1'A | C1' | C2' | N1' | 60.0° | 60.0° |
| H1'A | C1' | C2' | H2' | 180.0° | 180.0° |
| H1'A | C1' | C2' | H2'A | 60.0° | 60.0° |
| H1'B | C1' | C2' | N1' | 60.0° | 180.0° |
| H1'B | C1' | C2' | H2' | 60.0° | 60.0° |
| H1'B | C1' | C2' | H2'A | 180.0° | 60.0° |
| N1' | C2' | C1' | H2' | 120.0° | 120.0° |
| N1' | C2' | C1' | H2'A | 120.0° | 120.0° |
| N1' | C2' | H2' | H2'A | 119.7° | 120.0° |
| C2' | N1' | C3' | C6' | 179.7° | 179.7° |
| C2' | N1' | C3' | O1' | 11.4° | 0.1° |
| C2' | N1' | C3' | C4' | 170.3° | 180.0° |
| C2' | N1' | C6' | C5' | 179.0° | 179.8° |
| C2' | N1' | C6' | O2' | 1.5° | 0.2° |
| HO11 | O11 | C1 | O12 | 0.0° | 0.2° |
| O12 | C1 | CA1 | N1 | 151.5° | 20.3° |
| O12 | C1 | CA1 | CB1 | 36.9° | 99.8° |
| O12 | C1 | CA1 | H24 | 52.0° | 140.2° |
| C1' | C2' | H2' | H2'A | 119.7° | 120.0° |
| C1' | C2' | N1' | C3' | 100.1° | 90.0° |
| C1' | C2' | N1' | C6' | 79.5° | 90.3° |
| H2' | C2' | N1' | C3' | 139.9° | 30.0° |
| H2' | C2' | N1' | C6' | 40.5° | 149.7° |
| H2'A | C2' | N1' | C3' | 19.9° | 150.0° |
| H2'A | C2' | N1' | C6' | 160.5° | 29.7° |
| N1' | C3' | O1' | C4' | 178.1° | 179.9° |
| N1' | C3' | C4' | C5' | 13.7° | 0.0° |
| N1' | C3' | C4' | H4' | 133.7° | 118.5° |
| N1' | C3' | C4' | H4'A | 106.3° | 118.5° |
| C3' | N1' | C6' | C5' | 1.4° | 0.4° |
| C3' | N1' | C6' | O2' | 178.2° | 180.0° |
| O1' | C3' | C4' | C5' | 164.6° | 180.0° |
| O1' | C3' | C4' | H4' | 44.6° | 61.6° |
| O1' | C3' | C4' | H4'A | 75.3° | 61.4° |
| O1' | C3' | N1' | C6' | 168.2° | 179.7° |
| O31 | C3 | O32 | HO32 | 0.0° | 0.0° |
| O31 | C3 | CA3 | N3 | 139.9° | 0.0° |
| O31 | C3 | CA3 | HA3 | 100.1° | 120.0° |
| O31 | C3 | CA3 | HA3A | 19.9° | 120.1° |
| C3' | C4' | C5' | H4' | 120.0° | 118.5° |
| C3' | C4' | C5' | H4'A | 120.0° | 118.5° |
| C3' | C4' | H4' | H4'A | 123.6° | 123.0° |
| C3' | C4' | C5' | C6' | 11.6° | 0.3° |
| C3' | C4' | C5' | H5' | 110.5° | 118.5° |
| C4' | C3' | N1' | C6' | 10.0° | 0.2° |
| C3' | C4' | C5' | SG2 | 132.5° | 118.5° |
| C5' | C4' | H4' | H4'A | 123.6° | 122.9° |
| C4' | C5' | C6' | H5' | 122.5° | 118.6° |
| C4' | C5' | C6' | SG2 | 120.4° | 118.4° |
| C4' | C5' | H5' | SG2 | 121.7° | 122.9° |
| C4' | C5' | C6' | N1' | 7.4° | 0.4° |
| C4' | C5' | C6' | O2' | 173.0° | 180.0° |
| C4' | C5' | SG2 | CB2 | 38.7° | 175.0° |
| H4' | C4' | C5' | C6' | 131.6° | 118.7° |
| H4' | C4' | C5' | H5' | 9.5° | 0.0° |
| H4' | C4' | C5' | SG2 | 107.5° | 123.0° |
| H4'A | C4' | C5' | C6' | 108.4° | 118.3° |
| H4'A | C4' | C5' | H5' | 129.5° | 122.9° |
| H4'A | C4' | C5' | SG2 | 12.4° | 0.0° |
| C6' | C5' | H5' | SG2 | 122.0° | 122.9° |
| C5' | C6' | N1' | O2' | 179.6° | 179.6° |
| C6' | C5' | SG2 | CB2 | 153.7° | 71.0° |
| H5' | C5' | C6' | N1' | 115.1° | 118.2° |
| H5' | C5' | C6' | O2' | 64.5° | 61.4° |
| H5' | C5' | SG2 | CB2 | 84.0° | 52.1° |
| N1' | C6' | C5' | SG2 | 127.8° | 118.8° |
| O2' | C6' | C5' | SG2 | 52.6° | 61.6° |
| N1 | CA1 | CB1 | H24 | 87.5° | 120.0° |
| N1 | CA1 | CB1 | CG1 | 6.6° | 65.0° |
| N1 | CA1 | CB1 | HB1 | 113.4° | 55.0° |
| N1 | CA1 | CB1 | HB1A | 126.6° | 175.0° |
| N2 | CA2 | CB2 | HA2 | 120.7° | 120.0° |
| N2 | CA2 | CB2 | SG2 | 73.0° | 60.0° |
| N2 | CA2 | CB2 | HB2 | 47.0° | 60.0° |
| N2 | CA2 | CB2 | HB2A | 167.0° | 180.0° |
| CA2 | N2 | CD1 | CG1 | 179.8° | 180.0° |
| CA2 | N2 | CD1 | OE1 | 0.5° | 0.0° |
| CA2 | CB2 | SG2 | HB2 | 120.0° | 120.0° |
| CA2 | CB2 | SG2 | HB2A | 120.0° | 120.0° |
| CA2 | CB2 | HB2 | HB2A | 120.0° | 120.0° |
| CA2 | CB2 | SG2 | C5' | 134.8° | 180.0° |
| HA2 | CA2 | CB2 | SG2 | 47.7° | 60.0° |
| HA2 | CA2 | CB2 | HB2 | 167.7° | 179.9° |
| HA2 | CA2 | CB2 | HB2A | 72.3° | 60.0° |
| N3 | CA3 | HA3 | HA3A | 121.4° | 120.0° |
| CA1 | CB1 | CG1 | HB1 | 120.0° | 120.0° |
| CA1 | CB1 | CG1 | HB1A | 120.0° | 120.0° |
| CA1 | CB1 | HB1 | HB1A | 117.5° | 120.0° |
| CA1 | CB1 | CG1 | CD1 | 173.2° | 180.0° |
| CA1 | CB1 | CG1 | HG1 | 66.8° | 60.0° |
| CA1 | CB1 | CG1 | HG1A | 53.2° | 60.0° |
| CB1 | CA1 | N1 | H23 | 128.5° | 64.0° |
| CG1 | CB1 | HB1 | HB1A | 117.5° | 120.0° |
| CB1 | CG1 | CD1 | HG1 | 120.0° | 120.0° |
| CB1 | CG1 | CD1 | HG1A | 120.0° | 120.0° |
| CB1 | CG1 | CD1 | OE1 | 60.5° | 0.0° |
| CB1 | CG1 | HG1 | HG1A | 121.8° | 120.0° |
| CG1 | CB1 | CA1 | H24 | 80.9° | 55.0° |
| HB1 | CB1 | CG1 | CD1 | 53.2° | 60.0° |
| HB1 | CB1 | CG1 | HG1 | 173.2° | 180.0° |
| HB1 | CB1 | CG1 | HG1A | 66.8° | 60.0° |
| HB1 | CB1 | CA1 | H24 | 159.1° | 175.0° |
| HB1A | CB1 | CG1 | CD1 | 66.8° | 60.0° |
| HB1A | CB1 | CG1 | HG1 | 53.2° | 60.0° |
| HB1A | CB1 | CG1 | HG1A | 173.2° | 179.9° |
| HB1A | CB1 | CA1 | H24 | 39.1° | 65.0° |
| SG2 | CB2 | HB2 | HB2A | 120.1° | 120.0° |
| HB2 | CB2 | SG2 | C5' | 105.2° | 60.0° |
| HB2A | CB2 | SG2 | C5' | 14.8° | 60.0° |
| CD1 | CG1 | HG1 | HG1A | 121.8° | 120.0° |
| OE1 | CD1 | CG1 | HG1 | 59.5° | 120.0° |
| OE1 | CD1 | CG1 | HG1A | 179.6° | 120.0° |
| H23 | N1 | CA1 | H24 | 46.3° | 56.1° |
