L8P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | C4' | sing | 1.82Å | 1.84Å | |
| P | OP1 | sing | 1.61Å | 1.72Å | |
| P | OP2 | doub | 1.48Å | 1.51Å | |
| N1 | C2 | sing | 1.35Å | 1.36Å | |
| N1 | C6 | sing | 1.36Å | 1.34Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.33Å | 1.33Å | |
| N3 | C4 | doub | 1.33Å | 1.32Å | |
| C4 | N4 | sing | 1.38Å | 1.31Å | |
| C4 | C5 | sing | 1.41Å | 1.51Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å | |
| C5 | C6 | doub | 1.35Å | 1.53Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.53Å | 1.54Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.53Å | 1.56Å | |
| C2' | O4' | sing | 1.43Å | 1.47Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C3' | H3'A | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.43Å | 1.48Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C4' | H4'A | sing | 1.09Å | 1.10Å | |
| P | O6 | sing | 1.61Å | 1.72Å | |
| O3' | H12 | sing | 0.97Å | 0.95Å | |
| OP1 | H13 | sing | 0.97Å | 0.95Å | |
| O6 | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4' | P | OP1 | 110.8° | 109.5° |
| C4' | P | OP2 | 110.1° | 109.5° |
| P | C4' | O4' | 131.6° | 109.5° |
| P | C4' | H4' | 102.7° | 109.5° |
| P | C4' | H4'A | 102.7° | 109.5° |
| C4' | P | O6 | 117.3° | 109.5° |
| OP1 | P | OP2 | 104.9° | 109.5° |
| OP1 | P | O6 | 106.1° | 109.5° |
| P | OP1 | H13 | 109.5° | 114.0° |
| OP2 | P | O6 | 106.9° | 109.5° |
| C2 | N1 | C6 | 123.4° | 120.4° |
| C2 | N1 | C1' | 121.1° | 119.8° |
| N1 | C2 | O2 | 122.5° | 119.5° |
| N1 | C2 | N3 | 122.5° | 121.1° |
| C6 | N1 | C1' | 115.5° | 119.8° |
| N1 | C6 | C5 | 116.3° | 119.2° |
| N1 | C6 | H6 | 121.9° | 120.4° |
| N1 | C1' | C2' | 114.3° | 109.4° |
| N1 | C1' | H1' | 107.9° | 109.4° |
| N1 | C1' | H1'A | 107.9° | 109.5° |
| O2 | C2 | N3 | 115.0° | 119.4° |
| C2 | N3 | C4 | 123.5° | 120.7° |
| N3 | C4 | N4 | 126.4° | 120.2° |
| N3 | C4 | C5 | 118.3° | 119.6° |
| N4 | C4 | C5 | 115.2° | 120.2° |
| C4 | N4 | HN4 | 120.0° | 120.0° |
| C4 | N4 | HN4A | 120.0° | 120.0° |
| C4 | C5 | C6 | 115.9° | 119.0° |
| C4 | C5 | H5 | 122.1° | 120.5° |
| HN4 | N4 | HN4A | 120.0° | 120.0° |
| C6 | C5 | H5 | 122.0° | 120.5° |
| C5 | C6 | H6 | 121.9° | 120.4° |
| C2' | C1' | H1' | 107.9° | 109.5° |
| C2' | C1' | H1'A | 107.9° | 109.5° |
| C1' | C2' | C3' | 111.3° | 109.4° |
| C1' | C2' | O4' | 110.0° | 109.5° |
| C1' | C2' | H2' | 109.5° | 109.5° |
| H1' | C1' | H1'A | 111.0° | 109.5° |
| C3' | C2' | O4' | 114.0° | 109.5° |
| C3' | C2' | H2' | 105.1° | 109.4° |
| C2' | C3' | O3' | 113.9° | 109.5° |
| C2' | C3' | H3' | 108.0° | 109.4° |
| C2' | C3' | H3'A | 108.0° | 109.5° |
| O4' | C2' | H2' | 106.6° | 109.5° |
| C2' | O4' | C4' | 120.7° | 113.9° |
| O3' | C3' | H3' | 108.0° | 109.4° |
| O3' | C3' | H3'A | 108.0° | 109.5° |
| C3' | O3' | H12 | 109.5° | 114.0° |
| H3' | C3' | H3'A | 110.9° | 109.5° |
| O4' | C4' | H4' | 102.6° | 109.4° |
| O4' | C4' | H4'A | 102.6° | 109.4° |
| H4' | C4' | H4'A | 115.4° | 109.4° |
| P | O6 | H14 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4' | P | OP1 | OP2 | 118.7° | 120.0° |
| C4' | P | OP1 | O6 | 128.3° | 120.0° |
| C4' | P | OP2 | O6 | 128.3° | 120.0° |
| P | C4' | O4' | C2' | 165.0° | 76.1° |
| P | C4' | O4' | H4' | 120.0° | 120.0° |
| P | C4' | O4' | H4'A | 120.0° | 120.1° |
| P | C4' | H4' | H4'A | 110.8° | 120.0° |
| C4' | P | OP1 | H13 | 118.8° | 180.0° |
| C4' | P | O6 | H14 | 124.1° | 60.0° |
| OP1 | P | OP2 | O6 | 112.4° | 120.0° |
| OP1 | P | C4' | O4' | 151.0° | 176.7° |
| OP1 | P | C4' | H4' | 89.0° | 63.4° |
| OP1 | P | C4' | H4'A | 31.0° | 56.6° |
| OP1 | P | O6 | H14 | 111.5° | 60.0° |
| OP2 | P | C4' | O4' | 93.4° | 63.3° |
| OP2 | P | C4' | H4' | 26.6° | 56.7° |
| OP2 | P | C4' | H4'A | 146.6° | 176.7° |
| OP2 | P | OP1 | H13 | 0.0° | 60.0° |
| OP2 | P | O6 | H14 | 0.0° | 180.0° |
| C2 | N1 | C6 | C1' | 177.2° | 179.7° |
| N1 | C2 | O2 | N3 | 179.1° | 180.0° |
| N1 | C2 | N3 | C4 | 0.9° | 0.0° |
| C2 | N1 | C6 | C5 | 2.7° | 0.0° |
| C2 | N1 | C6 | H6 | 177.2° | 180.0° |
| C2 | N1 | C1' | C2' | 92.1° | 90.0° |
| C2 | N1 | C1' | H1' | 27.9° | 150.0° |
| C2 | N1 | C1' | H1'A | 147.9° | 30.0° |
| C6 | N1 | C2 | O2 | 178.2° | 180.0° |
| C6 | N1 | C2 | N3 | 2.8° | 0.0° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 179.7° | 179.9° |
| C6 | N1 | C1' | C2' | 90.6° | 90.3° |
| C6 | N1 | C1' | H1' | 149.4° | 29.7° |
| C6 | N1 | C1' | H1'A | 29.4° | 149.7° |
| C1' | N1 | C2 | O2 | 4.7° | 0.3° |
| C1' | N1 | C2 | N3 | 174.3° | 179.7° |
| C1' | N1 | C6 | C5 | 174.5° | 179.7° |
| C1' | N1 | C6 | H6 | 5.5° | 0.3° |
| N1 | C1' | C2' | H1' | 120.0° | 119.9° |
| N1 | C1' | C2' | H1'A | 120.0° | 120.0° |
| N1 | C1' | H1' | H1'A | 118.0° | 120.0° |
| N1 | C1' | C2' | C3' | 170.0° | 180.0° |
| N1 | C1' | C2' | O4' | 62.7° | 60.1° |
| N1 | C1' | C2' | H2' | 54.1° | 60.0° |
| O2 | C2 | N3 | C4 | 178.2° | 180.0° |
| C2 | N3 | C4 | N4 | 179.5° | 179.9° |
| C2 | N3 | C4 | C5 | 3.9° | 0.0° |
| N3 | C4 | N4 | C5 | 175.7° | 179.9° |
| N3 | C4 | N4 | HN4 | 0.0° | 0.1° |
| N3 | C4 | N4 | HN4A | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 3.5° | 0.0° |
| N3 | C4 | C5 | H5 | 176.5° | 180.0° |
| C4 | N4 | HN4 | HN4A | 180.0° | 179.9° |
| N4 | C4 | C5 | C6 | 179.6° | 179.9° |
| N4 | C4 | C5 | H5 | 0.4° | 0.1° |
| C5 | C4 | N4 | HN4 | 175.7° | 180.0° |
| C5 | C4 | N4 | HN4A | 4.3° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 179.7° | 180.0° |
| H5 | C5 | C6 | H6 | 0.3° | 0.1° |
| C2' | C1' | H1' | H1'A | 118.0° | 120.0° |
| C1' | C2' | C3' | O4' | 125.1° | 120.0° |
| C1' | C2' | C3' | H2' | 118.5° | 119.9° |
| C1' | C2' | O4' | H2' | 118.7° | 120.0° |
| C1' | C2' | C3' | O3' | 57.8° | 55.3° |
| C1' | C2' | C3' | H3' | 62.3° | 175.3° |
| C1' | C2' | C3' | H3'A | 177.7° | 64.7° |
| C1' | C2' | O4' | C4' | 83.4° | 154.7° |
| H1' | C1' | C2' | C3' | 50.0° | 60.0° |
| H1' | C1' | C2' | O4' | 177.3° | 180.0° |
| H1' | C1' | C2' | H2' | 65.9° | 59.9° |
| H1'A | C1' | C2' | C3' | 70.0° | 60.0° |
| H1'A | C1' | C2' | O4' | 57.3° | 60.0° |
| H1'A | C1' | C2' | H2' | 174.2° | 180.0° |
| C3' | C2' | O4' | H2' | 115.5° | 120.0° |
| C2' | C3' | O3' | H3' | 120.0° | 119.9° |
| C2' | C3' | O3' | H3'A | 120.0° | 120.0° |
| C2' | C3' | H3' | H3'A | 118.2° | 120.0° |
| C3' | C2' | O4' | C4' | 42.4° | 85.3° |
| C2' | C3' | O3' | H12 | 180.0° | 180.0° |
| O4' | C2' | C3' | O3' | 177.1° | 64.6° |
| O4' | C2' | C3' | H3' | 62.9° | 55.3° |
| O4' | C2' | C3' | H3'A | 57.1° | 175.3° |
| C2' | O4' | C4' | H4' | 45.0° | 163.9° |
| C2' | O4' | C4' | H4'A | 75.0° | 44.0° |
| H2' | C2' | C3' | O3' | 60.8° | 175.3° |
| H2' | C2' | C3' | H3' | 179.2° | 64.8° |
| H2' | C2' | C3' | H3'A | 59.2° | 55.2° |
| H2' | C2' | O4' | C4' | 157.9° | 34.7° |
| O3' | C3' | H3' | H3'A | 118.2° | 120.0° |
| H3' | C3' | O3' | H12 | 60.0° | 60.0° |
| H3'A | C3' | O3' | H12 | 60.0° | 60.0° |
| O4' | C4' | H4' | H4'A | 110.8° | 119.9° |
| O4' | C4' | P | O6 | 29.0° | 56.6° |
| H4' | C4' | P | O6 | 149.0° | 176.6° |
| H4'A | C4' | P | O6 | 91.0° | 63.4° |
| O6 | P | OP1 | H13 | 112.9° | 60.0° |
