L5Z
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N01 | C02 | doub | 1.30Å | 1.35Å | Aromatic |
N01 | C05 | sing | 1.34Å | 1.36Å | Aromatic |
C02 | N03 | sing | 1.36Å | 1.34Å | Aromatic |
N03 | C04 | sing | 1.37Å | 1.34Å | Aromatic |
N03 | C12 | sing | 1.39Å | 1.34Å | |
C04 | C05 | doub | 1.35Å | 1.38Å | Aromatic |
C1' | C2' | doub | 1.38Å | 1.39Å | Aromatic |
C1' | C24 | sing | 1.51Å | 1.52Å | |
C1' | C6' | sing | 1.38Å | 1.39Å | Aromatic |
N11 | C12 | doub | 1.32Å | 1.36Å | Aromatic |
N11 | C16 | sing | 1.32Å | 1.35Å | Aromatic |
C12 | N13 | sing | 1.32Å | 1.35Å | Aromatic |
N13 | C14 | doub | 1.32Å | 1.34Å | Aromatic |
C14 | C15 | sing | 1.39Å | 1.40Å | Aromatic |
C15 | C16 | doub | 1.39Å | 1.39Å | Aromatic |
C16 | C17 | sing | 1.51Å | 1.52Å | |
C17 | C18 | sing | 1.53Å | 1.52Å | |
C18 | N19 | sing | 1.47Å | 1.47Å | |
N19 | C21 | sing | 1.47Å | 1.48Å | |
C2' | C3' | sing | 1.39Å | 1.40Å | Aromatic |
C21 | C22 | sing | 1.53Å | 1.53Å | |
C21 | C23 | sing | 1.53Å | 1.53Å | |
C22 | C23 | sing | 1.53Å | 1.53Å | |
C23 | C24 | sing | 1.53Å | 1.53Å | |
C3' | C4' | doub | 1.38Å | 1.39Å | Aromatic |
C3' | F7' | sing | 1.35Å | 1.35Å | |
C4' | C5' | sing | 1.38Å | 1.39Å | Aromatic |
C5' | C6' | doub | 1.38Å | 1.39Å | Aromatic |
C02 | H02 | sing | 1.08Å | 1.08Å | |
C04 | H04 | sing | 1.08Å | 1.08Å | |
C05 | H05 | sing | 1.08Å | 1.08Å | |
C14 | H14 | sing | 1.08Å | 1.08Å | |
C15 | H15 | sing | 1.08Å | 1.08Å | |
C17 | H17 | sing | 1.09Å | 1.10Å | |
C17 | H17A | sing | 1.09Å | 1.10Å | |
C18 | H18 | sing | 1.09Å | 1.10Å | |
C18 | H18A | sing | 1.09Å | 1.10Å | |
N19 | HN19 | sing | 1.01Å | 1.00Å | |
C2' | H2' | sing | 1.08Å | 1.08Å | |
C21 | H21 | sing | 1.09Å | 1.10Å | |
C22 | H22 | sing | 1.09Å | 1.10Å | |
C22 | H22A | sing | 1.09Å | 1.10Å | |
C23 | H23 | sing | 1.09Å | 1.10Å | |
C24 | H24 | sing | 1.09Å | 1.10Å | |
C24 | H24A | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.08Å | 1.08Å | |
C5' | H5' | sing | 1.08Å | 1.08Å | |
C6' | H6' | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C02 | N01 | C05 | 111.6° | 109.4° |
N01 | C02 | N03 | 101.8° | 108.5° |
N01 | C02 | H02 | 129.1° | 125.7° |
N01 | C05 | C04 | 107.7° | 108.3° |
N01 | C05 | H05 | 126.2° | 125.9° |
C02 | N03 | C04 | 116.2° | 107.0° |
C02 | N03 | C12 | 120.6° | 126.5° |
N03 | C02 | H02 | 129.1° | 125.7° |
C04 | N03 | C12 | 123.2° | 126.5° |
N03 | C04 | C05 | 102.7° | 106.8° |
N03 | C04 | H04 | 128.7° | 126.6° |
N03 | C12 | N11 | 117.8° | 119.2° |
N03 | C12 | N13 | 120.7° | 119.2° |
C05 | C04 | H04 | 128.7° | 126.6° |
C04 | C05 | H05 | 126.1° | 125.9° |
C2' | C1' | C24 | 120.5° | 120.0° |
C2' | C1' | C6' | 119.1° | 120.0° |
C1' | C2' | C3' | 120.3° | 120.0° |
C1' | C2' | H2' | 119.9° | 120.0° |
C24 | C1' | C6' | 120.4° | 120.0° |
C1' | C24 | C23 | 109.4° | 109.5° |
C1' | C24 | H24 | 109.5° | 109.5° |
C1' | C24 | H24A | 109.5° | 109.4° |
C1' | C6' | C5' | 120.8° | 120.1° |
C1' | C6' | H6' | 119.6° | 120.0° |
C12 | N11 | C16 | 120.3° | 120.8° |
N11 | C12 | N13 | 121.5° | 121.6° |
N11 | C16 | C15 | 118.7° | 119.1° |
N11 | C16 | C17 | 120.3° | 120.4° |
C12 | N13 | C14 | 119.9° | 120.8° |
N13 | C14 | C15 | 119.8° | 119.2° |
N13 | C14 | H14 | 120.1° | 120.4° |
C14 | C15 | C16 | 119.8° | 118.5° |
C15 | C14 | H14 | 120.1° | 120.4° |
C14 | C15 | H15 | 120.1° | 120.8° |
C15 | C16 | C17 | 121.0° | 120.4° |
C16 | C15 | H15 | 120.1° | 120.8° |
C16 | C17 | C18 | 108.5° | 109.5° |
C16 | C17 | H17 | 109.7° | 109.5° |
C16 | C17 | H17A | 109.7° | 109.5° |
C17 | C18 | N19 | 110.3° | 109.5° |
C18 | C17 | H17 | 109.7° | 109.4° |
C18 | C17 | H17A | 109.7° | 109.5° |
C17 | C18 | H18 | 109.3° | 109.4° |
C17 | C18 | H18A | 109.2° | 109.5° |
C18 | N19 | C21 | 113.0° | 111.0° |
N19 | C18 | H18 | 109.3° | 109.5° |
N19 | C18 | H18A | 109.3° | 109.5° |
C18 | N19 | HN19 | 108.6° | 111.0° |
N19 | C21 | C22 | 109.7° | 117.5° |
N19 | C21 | C23 | 110.0° | 117.5° |
C21 | N19 | HN19 | 108.6° | 111.0° |
N19 | C21 | H21 | 121.4° | 115.6° |
C2' | C3' | C4' | 120.2° | 119.9° |
C2' | C3' | F7' | 119.9° | 120.0° |
C3' | C2' | H2' | 119.8° | 120.0° |
C22 | C21 | C23 | 59.9° | 60.0° |
C21 | C22 | C23 | 60.1° | 60.0° |
C22 | C21 | H21 | 120.3° | 117.5° |
C21 | C22 | H22 | 120.0° | 117.5° |
C21 | C22 | H22A | 120.0° | 117.5° |
C21 | C23 | C22 | 60.0° | 60.0° |
C21 | C23 | C24 | 112.2° | 117.5° |
C23 | C21 | H21 | 120.2° | 117.5° |
C21 | C23 | H23 | 120.2° | 117.5° |
C22 | C23 | C24 | 109.4° | 117.5° |
C23 | C22 | H22 | 120.0° | 117.5° |
C23 | C22 | H22A | 120.0° | 117.5° |
C22 | C23 | H23 | 120.2° | 117.5° |
C24 | C23 | H23 | 120.2° | 115.5° |
C23 | C24 | H24 | 109.5° | 109.5° |
C23 | C24 | H24A | 109.5° | 109.5° |
C4' | C3' | F7' | 120.0° | 120.1° |
C3' | C4' | C5' | 119.8° | 120.0° |
C3' | C4' | H4' | 120.1° | 120.0° |
C4' | C5' | C6' | 119.8° | 120.0° |
C5' | C4' | H4' | 120.1° | 120.0° |
C4' | C5' | H5' | 120.1° | 119.9° |
C6' | C5' | H5' | 120.1° | 120.0° |
C5' | C6' | H6' | 119.6° | 119.9° |
H17 | C17 | H17A | 109.5° | 109.5° |
H18 | C18 | H18A | 109.4° | 109.4° |
H22 | C22 | H22A | 109.5° | 115.6° |
H24 | C24 | H24A | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N01 | C02 | N03 | H02 | 180.0° | 180.0° |
N01 | C02 | N03 | C04 | 1.6° | 0.0° |
N01 | C02 | N03 | C12 | 178.4° | 179.9° |
C02 | N01 | C05 | C04 | 0.4° | 0.0° |
C02 | N01 | C05 | H05 | 179.6° | 180.0° |
C05 | N01 | C02 | N03 | 1.1° | 0.0° |
N01 | C05 | C04 | N03 | 0.6° | 0.0° |
N01 | C05 | C04 | H05 | 180.0° | 179.9° |
C05 | N01 | C02 | H02 | 178.9° | 180.0° |
N01 | C05 | C04 | H04 | 179.4° | 180.0° |
C02 | N03 | C04 | C12 | 176.7° | 179.9° |
C02 | N03 | C04 | C05 | 1.4° | 0.0° |
C02 | N03 | C12 | N11 | 8.9° | 0.1° |
C02 | N03 | C12 | N13 | 173.5° | 180.0° |
C02 | N03 | C04 | H04 | 178.6° | 180.0° |
N03 | C04 | C05 | H04 | 180.0° | 180.0° |
C04 | N03 | C12 | N11 | 167.7° | 180.0° |
C04 | N03 | C12 | N13 | 9.9° | 0.1° |
C04 | N03 | C02 | H02 | 178.4° | 180.0° |
N03 | C04 | C05 | H05 | 179.4° | 179.9° |
C12 | N03 | C04 | C05 | 178.1° | 179.9° |
N03 | C12 | N11 | N13 | 177.6° | 179.9° |
N03 | C12 | N11 | C16 | 178.6° | 180.0° |
N03 | C12 | N13 | C14 | 178.4° | 179.9° |
C12 | N03 | C02 | H02 | 1.6° | 0.1° |
C12 | N03 | C04 | H04 | 1.9° | 0.1° |
C2' | C1' | C24 | C6' | 179.9° | 179.7° |
C1' | C2' | C3' | H2' | 180.0° | 179.9° |
C2' | C1' | C24 | C23 | 33.7° | 90.0° |
C1' | C2' | C3' | C4' | 0.4° | 0.0° |
C1' | C2' | C3' | F7' | 179.7° | 180.0° |
C2' | C1' | C6' | C5' | 0.1° | 0.5° |
C2' | C1' | C24 | H24 | 86.3° | 150.0° |
C2' | C1' | C24 | H24A | 153.7° | 30.0° |
C2' | C1' | C6' | H6' | 179.9° | 180.0° |
C24 | C1' | C2' | C3' | 179.8° | 180.0° |
C1' | C24 | C23 | C21 | 163.6° | 175.0° |
C1' | C24 | C23 | C22 | 99.0° | 116.4° |
C1' | C24 | C23 | H24 | 120.0° | 120.0° |
C1' | C24 | C23 | H24A | 120.0° | 120.0° |
C24 | C1' | C6' | C5' | 179.8° | 179.7° |
C24 | C1' | C2' | H2' | 0.2° | 0.1° |
C1' | C24 | C23 | H23 | 46.3° | 29.3° |
C1' | C24 | H24 | H24A | 120.0° | 120.0° |
C24 | C1' | C6' | H6' | 0.2° | 0.3° |
C6' | C1' | C2' | C3' | 0.3° | 0.3° |
C6' | C1' | C24 | C23 | 146.2° | 89.7° |
C1' | C6' | C5' | C4' | 0.3° | 0.5° |
C1' | C6' | C5' | H6' | 180.0° | 179.5° |
C6' | C1' | C2' | H2' | 179.7° | 179.7° |
C6' | C1' | C24 | H24 | 93.8° | 30.3° |
C6' | C1' | C24 | H24A | 26.2° | 150.2° |
C1' | C6' | C5' | H5' | 179.6° | 179.7° |
N11 | C12 | N13 | C14 | 0.8° | 0.0° |
C12 | N11 | C16 | C15 | 0.5° | 0.0° |
C12 | N11 | C16 | C17 | 179.8° | 179.9° |
C16 | N11 | C12 | N13 | 1.0° | 0.1° |
N11 | C16 | C15 | C14 | 0.3° | 0.1° |
N11 | C16 | C15 | C17 | 179.3° | 179.9° |
N11 | C16 | C17 | C18 | 58.1° | 55.0° |
N11 | C16 | C15 | H15 | 179.7° | 180.0° |
N11 | C16 | C17 | H17 | 177.9° | 65.0° |
N11 | C16 | C17 | H17A | 61.8° | 175.0° |
C12 | N13 | C14 | C15 | 0.1° | 0.0° |
C12 | N13 | C14 | H14 | 180.0° | 180.0° |
N13 | C14 | C15 | H14 | 180.0° | 180.0° |
N13 | C14 | C15 | C16 | 0.5° | 0.1° |
N13 | C14 | C15 | H15 | 179.5° | 180.0° |
C14 | C15 | C16 | H15 | 180.0° | 179.9° |
C14 | C15 | C16 | C17 | 179.0° | 180.0° |
C15 | C16 | C17 | C18 | 121.2° | 125.0° |
C16 | C15 | C14 | H14 | 179.5° | 180.0° |
C15 | C16 | C17 | H17 | 1.4° | 115.1° |
C15 | C16 | C17 | H17A | 118.9° | 4.9° |
C16 | C17 | C18 | H17 | 119.9° | 120.0° |
C16 | C17 | C18 | H17A | 119.9° | 120.0° |
C16 | C17 | C18 | N19 | 163.2° | 180.0° |
C17 | C16 | C15 | H15 | 1.0° | 0.1° |
C16 | C17 | H17 | H17A | 120.5° | 120.0° |
C16 | C17 | C18 | H18 | 43.0° | 60.0° |
C16 | C17 | C18 | H18A | 76.7° | 59.9° |
C17 | C18 | N19 | H18 | 120.2° | 120.0° |
C17 | C18 | N19 | H18A | 120.1° | 120.0° |
C17 | C18 | N19 | C21 | 65.2° | 180.0° |
C18 | C17 | H17 | H17A | 120.4° | 120.0° |
C17 | C18 | H18 | H18A | 119.6° | 119.9° |
C17 | C18 | N19 | HN19 | 55.3° | 56.1° |
C18 | N19 | C21 | HN19 | 120.5° | 124.0° |
C18 | N19 | C21 | C22 | 85.6° | 136.4° |
C18 | N19 | C21 | C23 | 149.7° | 155.0° |
N19 | C18 | C17 | H17 | 77.0° | 60.0° |
N19 | C18 | C17 | H17A | 43.3° | 60.0° |
N19 | C18 | H18 | H18A | 119.6° | 120.0° |
C18 | N19 | C21 | H21 | 62.1° | 9.3° |
N19 | C21 | C22 | C23 | 102.2° | 107.5° |
N19 | C21 | C22 | H21 | 148.2° | 145.0° |
N19 | C21 | C23 | H21 | 148.6° | 145.0° |
N19 | C21 | C23 | C24 | 158.0° | 145.0° |
C21 | N19 | C18 | H18 | 174.7° | 60.0° |
C21 | N19 | C18 | H18A | 54.9° | 60.0° |
N19 | C21 | C22 | H22 | 7.3° | 0.0° |
N19 | C21 | C22 | H22A | 148.3° | 145.0° |
N19 | C21 | C23 | H23 | 7.9° | 0.0° |
C2' | C3' | C4' | F7' | 179.9° | 180.0° |
C2' | C3' | C4' | C5' | 0.1° | 0.0° |
C2' | C3' | C4' | H4' | 179.9° | 180.0° |
C22 | C21 | C23 | H21 | 109.6° | 107.5° |
C21 | C22 | C23 | H22 | 109.5° | 107.5° |
C21 | C22 | C23 | H22A | 109.5° | 107.5° |
C22 | C21 | C23 | C24 | 100.2° | 107.5° |
C22 | C21 | N19 | HN19 | 153.9° | 99.7° |
C21 | C22 | H22 | H22A | 144.7° | 145.7° |
C22 | C21 | C23 | H23 | 109.7° | 107.5° |
C21 | C23 | C24 | H23 | 150.1° | 145.7° |
C23 | C21 | N19 | HN19 | 89.8° | 31.0° |
C21 | C23 | C24 | H24 | 76.4° | 55.0° |
C21 | C23 | C24 | H24A | 43.7° | 65.0° |
C22 | C23 | C24 | H23 | 145.3° | 145.7° |
C23 | C22 | H22 | H22A | 144.7° | 145.7° |
C22 | C23 | C24 | H24 | 141.0° | 123.6° |
C22 | C23 | C24 | H24A | 21.0° | 3.6° |
C24 | C23 | C21 | H21 | 9.4° | 0.0° |
C24 | C23 | C22 | H22 | 145.4° | 145.0° |
C24 | C23 | C22 | H22A | 4.4° | 0.0° |
C23 | C24 | H24 | H24A | 120.1° | 120.0° |
C3' | C4' | C5' | H4' | 180.0° | 180.0° |
C3' | C4' | C5' | C6' | 0.3° | 0.3° |
C4' | C3' | C2' | H2' | 179.6° | 180.0° |
C3' | C4' | C5' | H5' | 179.7° | 180.0° |
F7' | C3' | C4' | C5' | 180.0° | 180.0° |
F7' | C3' | C2' | H2' | 0.3° | 0.0° |
F7' | C3' | C4' | H4' | 0.0° | 0.0° |
C4' | C5' | C6' | H5' | 180.0° | 179.7° |
C4' | C5' | C6' | H6' | 179.7° | 180.0° |
C6' | C5' | C4' | H4' | 179.7° | 179.7° |
H04 | C04 | C05 | H05 | 0.6° | 0.0° |
H14 | C14 | C15 | H15 | 0.5° | 0.0° |
H17 | C17 | C18 | H18 | 162.9° | 180.0° |
H17 | C17 | C18 | H18A | 43.2° | 60.1° |
H17A | C17 | C18 | H18 | 76.9° | 60.0° |
H17A | C17 | C18 | H18A | 163.4° | 180.0° |
H18 | C18 | N19 | HN19 | 64.9° | 176.0° |
H18A | C18 | N19 | HN19 | 175.4° | 64.0° |
HN19 | N19 | C21 | H21 | 58.4° | 114.7° |
H21 | C21 | C22 | H22 | 140.9° | 145.1° |
H21 | C21 | C22 | H22A | 0.1° | 0.0° |
H21 | C21 | C23 | H23 | 140.7° | 145.0° |
H22 | C22 | C23 | H23 | 0.1° | 0.0° |
H22A | C22 | C23 | H23 | 140.9° | 145.0° |
H23 | C23 | C24 | H24 | 73.7° | 90.7° |
H23 | C23 | C24 | H24A | 166.3° | 149.3° |
H4' | C4' | C5' | H5' | 0.3° | 0.0° |
H5' | C5' | C6' | H6' | 0.4° | 0.3° |