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L5R

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C24C23doub1.38Å1.38ÅAromatic
C24C25sing1.38Å1.38ÅAromatic
C23C22sing1.38Å1.38ÅAromatic
C25C26doub1.38Å1.38ÅAromatic
C22C21doub1.40Å1.39ÅAromatic
C26C21sing1.40Å1.39ÅAromatic
C21C8sing1.48Å1.47Å
O2C2doub1.21Å1.23Å
N3C2sing1.33Å1.39Å
N3C4sing1.34Å1.37Å
C2N1sing1.34Å1.36Å
C8C7doub1.34Å1.38Å
C8C6sing1.52Å1.53Å
C4O4doub1.21Å1.22Å
C4C5sing1.51Å1.50Å
C7C5sing1.52Å1.53Å
N1C6sing1.47Å1.43Å
N1C1'sing1.47Å1.48Å
C6C5sing1.55Å1.58Å
C2'C1'sing1.54Å1.52Å
C2'C3'sing1.55Å1.52Å
C5C10sing1.47Å1.45Å
O3'C3'sing1.43Å1.43Å
C1'O4'sing1.44Å1.43Å
C3'C4'sing1.54Å1.53Å
C10C11trip1.17Å1.19Å
O4'C4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.51Å
C11C12sing1.43Å1.44Å
C5'O5'sing1.43Å1.44Å
C12C13doub1.40Å1.39ÅAromatic
C12C17sing1.40Å1.39ÅAromatic
OP1Pdoub1.48Å1.49Å
O5'Psing1.61Å1.60Å
C13C14sing1.38Å1.38ÅAromatic
C17C16doub1.38Å1.39ÅAromatic
POP2sing1.61Å1.49Å
C14C15doub1.38Å1.38ÅAromatic
C16C15sing1.38Å1.38ÅAromatic
C6H6sing1.09Å1.10Å
N3H3sing0.97Å1.00Å
C1'H1'sing1.09Å1.10Å
C7H71sing1.08Å1.08Å
C13H7sing1.08Å1.08Å
C14H8sing1.08Å1.08Å
C15H9sing1.08Å1.08Å
C16H10sing1.08Å1.08Å
C17H11sing1.08Å1.08Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C2'H2''sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
C22H19sing1.08Å1.08Å
C23H20sing1.08Å1.08Å
C24H21sing1.08Å1.08Å
C25H22sing1.08Å1.08Å
C26H23sing1.08Å1.08Å
OP2HOP2sing0.97Å0.95Å
POP3sing1.61Å1.61Å
OP3HOP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C23C24C25119.8°120.3°
C24C23C22120.2°120.2°
C24C23H20119.9°120.0°
C23C24H21120.1°119.8°
C24C25C26120.1°120.1°
C25C24H21120.1°119.9°
C24C25H22119.9°120.0°
C23C22C21120.8°119.8°
C23C22H19119.6°120.1°
C22C23H20119.9°119.8°
C25C26C21120.9°119.9°
C26C25H22119.9°119.9°
C25C26H23119.6°120.1°
C22C21C26118.2°119.7°
C22C21C8121.2°120.1°
C21C22H19119.6°120.1°
C26C21C8120.7°120.1°
C21C26H23119.5°120.0°
C21C8C7139.5°133.0°
C21C8C6130.9°133.0°
O2C2N3120.5°117.6°
O2C2N1125.1°117.5°
C2N3C4127.3°124.1°
N3C2N1114.4°124.9°
C2N3H3116.3°117.9°
N3C4O4121.6°120.5°
N3C4C5116.4°119.0°
C4N3H3116.3°118.0°
C2N1C6115.7°120.2°
C2N1C1'124.5°119.9°
C7C8C689.6°94.0°
C8C7C589.8°94.0°
C8C7H71135.1°133.0°
C8C6N1113.9°111.1°
C8C6C583.0°86.0°
C8C6H6113.2°113.9°
O4C4C5122.0°120.5°
C4C5C7118.8°111.0°
C4C5C6111.0°115.8°
C4C5C10109.8°113.2°
C7C5C682.6°86.0°
C7C5C10116.6°114.0°
C5C7H71135.1°133.0°
C6N1C1'119.8°119.9°
N1C6C5115.8°116.0°
N1C6H6114.7°113.1°
N1C1'C2'112.9°110.4°
N1C1'O4'108.2°110.4°
N1C1'H1'110.5°110.3°
C6C5C10115.7°114.0°
C5C6H6112.4°113.9°
C1'C2'C3'95.5°104.1°
C2'C1'O4'103.8°104.8°
C2'C1'H1'110.0°110.5°
C1'C2'H2'112.9°110.5°
C1'C2'H2''112.9°110.5°
C2'C3'O3'108.8°110.7°
C2'C3'C4'99.4°104.1°
C2'C3'H3'108.3°110.5°
C3'C2'H2'112.9°110.5°
C3'C2'H2''112.8°110.5°
C5C10C11176.4°179.9°
O3'C3'C4'121.6°110.5°
O3'C3'H3'109.5°110.5°
C3'O3'HO3'109.5°114.0°
C1'O4'C4'107.2°105.2°
O4'C1'H1'111.4°110.4°
C3'C4'O4'104.4°104.8°
C3'C4'C5'112.7°110.4°
C3'C4'H4'109.2°110.5°
C4'C3'H3'108.1°110.5°
C10C11C12177.4°179.9°
O4'C4'C5'110.4°110.3°
O4'C4'H4'110.4°110.3°
C4'C5'O5'110.4°109.5°
C5'C4'H4'109.5°110.4°
C4'C5'H5'109.2°109.4°
C4'C5'H5''109.3°109.5°
C11C12C13120.2°120.2°
C11C12C17120.8°120.1°
C5'O5'P124.3°123.0°
O5'C5'H5'109.3°109.5°
O5'C5'H5''109.3°109.5°
C13C12C17119.0°119.7°
C12C13C14120.2°119.8°
C12C13H7119.9°120.1°
C12C17C16120.1°119.9°
C12C17H11119.9°120.1°
OP1PO5'110.0°109.4°
OP1POP2118.3°109.5°
OP1POP3110.2°109.5°
O5'POP2108.4°109.5°
O5'POP398.3°109.5°
C13C14C15120.3°120.2°
C14C13H7119.9°120.1°
C13C14H8119.8°119.9°
C17C16C15120.3°120.1°
C17C16H10119.8°119.9°
C16C17H11120.0°120.1°
POP2HOP2109.5°114.0°
OP2POP3109.7°109.5°
C14C15C16120.0°120.3°
C15C14H8119.9°119.9°
C14C15H9120.0°119.9°
C16C15H9120.0°119.8°
C15C16H10119.8°120.0°
H2'C2'H2''109.4°110.6°
H5'C5'H5''109.4°109.5°
POP3HOP3109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C23C24C25H21180.0°179.9°
C24C23C22H20180.0°180.0°
C23C24C25C260.0°0.3°
C24C23C22C210.0°0.0°
C24C23C22H19180.0°179.9°
C23C24C25H22180.0°180.0°
C25C24C23C220.0°0.0°
C24C25C26H22180.0°179.7°
C24C25C26C210.0°0.6°
C25C24C23H20180.0°180.0°
C24C25C26H23180.0°180.0°
C23C22C21H19180.0°179.9°
C23C22C21C260.0°0.3°
C23C22C21C8180.0°180.0°
C22C23C24H21180.0°180.0°
C25C26C21C220.0°0.6°
C25C26C21H23180.0°179.4°
C25C26C21C8180.0°179.7°
C26C25C24H21180.0°179.7°
C22C21C26C8180.0°179.7°
C22C21C8C718.5°65.0°
C22C21C8C6161.4°114.9°
C21C22C23H20180.0°180.0°
C22C21C26H23180.0°180.0°
C26C21C8C7161.5°115.3°
C26C21C8C618.6°64.8°
C26C21C22H19180.0°179.8°
C21C26C25H22180.0°179.7°
C21C8C7C6179.9°179.9°
C21C8C7C5149.9°179.9°
C21C8C6N135.5°63.5°
C21C8C6C5150.7°179.9°
C21C8C6H697.9°65.6°
C21C8C7H7130.1°0.0°
C8C21C22H190.0°0.1°
C8C21C26H230.0°0.3°
O2C2N3N1179.9°180.0°
O2C2N3C4177.7°179.9°
O2C2N1C6140.4°180.0°
O2C2N1C1'39.7°0.0°
O2C2N3H32.3°0.1°
C2N3C4H3180.0°180.0°
C2N3C4O4156.1°180.0°
C2N3C4C523.9°0.0°
N3C2N1C639.7°0.0°
N3C2N1C1'140.2°180.0°
C4N3C2N12.4°0.0°
N3C4O4C5180.0°180.0°
N3C4C5C781.0°95.9°
N3C4C5C612.0°0.1°
N3C4C5C10141.2°134.3°
C2N1C6C844.4°96.0°
C2N1C6C1'179.9°180.0°
C2N1C6C549.4°0.1°
C2N1C1'C2'10.5°61.9°
C2N1C1'O4'124.8°53.5°
C2N1C6H6177.0°134.4°
N1C2N3H3177.5°179.9°
C2N1C1'H1'113.1°175.8°
C8C7C5C480.7°116.1°
C8C7C5H71180.0°180.0°
C7C8C6N1144.5°116.4°
C7C8C6C529.3°0.0°
C8C7C5C10144.3°114.6°
C7C8C6H682.1°114.5°
C8C6C5C491.6°111.4°
C8C6N1C593.8°96.0°
C8C6N1H6132.7°129.6°
C8C6N1C1'135.7°84.0°
C8C6C5H6112.2°114.5°
C8C6C5C10142.4°114.6°
C6C8C7H71150.0°180.0°
O4C4C5C799.0°84.0°
O4C4C5C6168.0°179.9°
O4C4C5C1038.8°45.7°
O4C4N3H323.9°0.0°
C4C5C7C6109.9°116.1°
C4C5C7C10135.0°129.3°
C4C5C6N121.6°0.1°
C4C5C6C10126.0°134.0°
C4C5C10C1114.4°115.5°
C4C5C6H6156.1°134.1°
C5C4N3H3156.1°180.0°
C4C5C7H7199.3°63.9°
C7C5C6N1139.6°111.5°
C7C5C6C10115.9°114.6°
C7C5C10C11124.5°116.3°
C7C5C6H685.8°114.4°
N1C6C5H6134.6°134.0°
C6N1C1'C2'169.4°118.1°
N1C6C5C10104.4°133.9°
C6N1C1'O4'55.1°126.4°
C6N1C1'H1'67.0°4.2°
C1'N1C6C5130.5°179.9°
N1C1'C2'O4'116.9°118.8°
N1C1'C2'H1'123.8°122.3°
N1C1'C2'C3'67.1°142.8°
N1C1'O4'H1'121.6°122.2°
N1C1'O4'C4'91.1°159.4°
C1'N1C6H63.1°45.5°
N1C1'C2'H2'175.3°98.5°
N1C1'C2'H2''50.6°24.2°
C6C5C10C11140.9°19.7°
C6C5C7H71150.8°180.0°
C1'C2'C3'H2'117.6°118.7°
C1'C2'C3'H2''117.7°118.6°
C1'C2'C3'O3'178.5°118.7°
C2'C1'O4'H1'118.3°118.9°
C1'C2'C3'C4'50.3°0.0°
C2'C1'O4'C4'29.1°40.5°
C1'C2'C3'H3'62.5°118.6°
C1'C2'H2'H2''126.6°122.7°
C2'C3'O3'C4'114.4°114.7°
C2'C3'O3'H3'118.2°122.7°
C3'C2'C1'O4'49.9°24.0°
C2'C3'C4'H3'112.9°118.6°
C2'C3'C4'O4'35.6°24.0°
C2'C3'C4'C5'155.5°142.8°
C3'C2'C1'H1'169.1°94.9°
C2'C3'C4'H4'82.5°94.9°
C3'C2'H2'H2''126.5°122.7°
C2'C3'O3'HO3'180.0°65.3°
C5C10C11C1224.5°156.8°
C10C5C6H630.2°0.1°
C10C5C7H7135.7°65.4°
O3'C3'C4'H3'128.0°122.6°
O3'C3'C4'O4'154.7°142.8°
O3'C3'C4'C5'85.4°98.4°
O3'C3'C4'H4'36.6°24.0°
O3'C3'C2'H2'60.8°0.0°
O3'C3'C2'H2''63.9°122.7°
C1'O4'C4'C3'4.3°40.5°
C1'O4'C4'C5'125.8°159.3°
C1'O4'C4'H4'112.9°78.5°
O4'C1'C2'H2'67.8°142.6°
O4'C1'C2'H2''167.5°94.7°
C3'C4'O4'C5'121.5°118.8°
C3'C4'O4'H4'117.3°119.0°
C3'C4'C5'H4'121.8°122.5°
C3'C4'C5'O5'143.3°178.2°
C4'C3'C2'H2'67.3°118.7°
C4'C3'C2'H2''167.9°118.7°
C4'C3'O3'HO3'65.6°180.0°
C3'C4'C5'H5'23.1°58.2°
C3'C4'C5'H5''96.6°61.8°
C10C11C12C1398.1°3.6°
C10C11C12C1781.9°176.7°
O4'C4'C5'H4'121.8°122.2°
O4'C4'C5'O5'100.3°66.5°
C4'O4'C1'H1'147.3°78.4°
O4'C4'C3'H3'77.3°94.6°
O4'C4'C5'H5'139.5°173.6°
O4'C4'C5'H5''19.8°53.6°
C4'C5'O5'H5'120.1°119.9°
C4'C5'O5'H5''120.2°120.0°
C4'C5'O5'P81.4°180.0°
C5'C4'C3'H3'42.6°24.1°
C4'C5'H5'H5''119.6°120.0°
C11C12C13C17180.0°179.7°
C11C12C13C14180.0°179.9°
C11C12C17C16180.0°179.8°
C11C12C13H70.0°0.0°
C11C12C17H110.0°0.0°
C5'O5'POP137.9°55.0°
C5'O5'POP292.9°65.0°
O5'C5'C4'H4'21.5°55.7°
O5'C5'H5'H5''119.6°120.0°
C5'O5'POP3153.1°175.0°
C12C13C14H7180.0°180.0°
C13C12C17C160.0°0.5°
C12C13C14C150.0°0.0°
C12C13C14H8180.0°180.0°
C13C12C17H11180.0°179.7°
C17C12C13C140.0°0.2°
C12C17C16H11180.0°179.8°
C12C17C16C150.0°0.5°
C17C12C13H7180.0°179.8°
C12C17C16H10180.0°179.7°
OP1PO5'OP2130.7°120.0°
OP1PO5'OP3115.2°120.0°
OP1POP2OP3127.6°120.0°
OP1POP2HOP20.0°180.0°
OP1POP3HOP30.0°60.0°
O5'POP2OP3106.4°120.1°
PO5'C5'H5'38.7°60.0°
PO5'C5'H5''158.4°60.0°
O5'POP2HOP2126.0°60.0°
O5'POP3HOP3115.0°180.0°
C13C14C15H8180.0°179.9°
C13C14C15C160.0°0.0°
C13C14C15H9179.9°179.9°
C17C16C15C140.0°0.3°
C17C16C15H10180.0°179.8°
C17C16C15H9179.9°179.8°
OP2POP3HOP3132.0°60.0°
C14C15C16H9180.0°179.9°
C15C14C13H7180.0°180.0°
C14C15C16H10179.9°179.9°
C16C15C14H8179.9°180.0°
C15C16C17H11180.0°179.7°
H1'C1'C2'H2'51.5°23.7°
H1'C1'C2'H2''73.3°146.5°
H7C13C14H80.0°0.0°
H8C14C15H90.1°0.0°
H9C15C16H100.1°0.0°
H10C16C17H110.0°0.1°
H4'C4'C3'H3'164.6°146.5°
H4'C4'C5'H5'98.7°64.3°
H4'C4'C5'H5''141.6°175.8°
H3'C3'C2'H2'179.9°122.7°
H3'C3'C2'H2''55.1°0.0°
H3'C3'O3'HO3'61.8°57.4°
H19C22C23H200.0°0.1°
H20C23C24H210.0°0.0°
H21C24C25H220.0°0.1°
H22C25C26H230.0°0.3°
HOP2OP2POP3127.6°60.0°

223532

PDB entries from 2024-08-07

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