L5P
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O11 | P9 | doub | 1.48Å | 1.48Å | |
P9 | O8 | sing | 1.61Å | 1.57Å | |
P9 | O10 | sing | 1.61Å | 1.48Å | |
P9 | O12 | sing | 1.61Å | 1.48Å | |
O8 | C7 | sing | 1.43Å | 1.40Å | |
O14 | C6 | sing | 1.43Å | 1.42Å | |
C6 | C7 | sing | 1.53Å | 1.50Å | |
C6 | C5 | sing | 1.53Å | 1.50Å | |
N | CA | sing | 1.47Å | 1.45Å | |
CD | CG | sing | 1.53Å | 1.51Å | |
CD | CE | sing | 1.53Å | 1.51Å | |
O4 | C3 | doub | 1.21Å | 1.22Å | |
NZ | CE | sing | 1.47Å | 1.46Å | |
NZ | C2 | sing | 1.47Å | 1.47Å | |
CG | CB | sing | 1.53Å | 1.49Å | |
O | C1 | doub | 1.21Å | 1.23Å | |
CB | CA | sing | 1.53Å | 1.52Å | |
C3 | C5 | sing | 1.51Å | 1.49Å | |
C3 | C2 | sing | 1.51Å | 1.49Å | |
C5 | O13 | sing | 1.43Å | 1.43Å | |
CA | C1 | sing | 1.51Å | 1.51Å | |
N | H1 | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
CA | H4 | sing | 1.09Å | 1.10Å | |
CB | H5 | sing | 1.09Å | 1.10Å | |
CB | H6 | sing | 1.09Å | 1.10Å | |
CG | H7 | sing | 1.09Å | 1.10Å | |
CG | H8 | sing | 1.09Å | 1.10Å | |
CD | H9 | sing | 1.09Å | 1.10Å | |
CD | H10 | sing | 1.09Å | 1.10Å | |
CE | H11 | sing | 1.09Å | 1.10Å | |
CE | H12 | sing | 1.09Å | 1.10Å | |
NZ | H13 | sing | 1.01Å | 1.00Å | |
C1 | OXT | sing | 1.34Å | 1.08Å | |
C2 | H16 | sing | 1.09Å | 1.10Å | |
C2 | H17 | sing | 1.09Å | 1.10Å | |
C5 | H18 | sing | 1.09Å | 1.10Å | |
O13 | H19 | sing | 0.97Å | 0.95Å | |
C6 | H20 | sing | 1.09Å | 1.10Å | |
O14 | H21 | sing | 0.97Å | 0.95Å | |
C7 | H22 | sing | 1.09Å | 1.10Å | |
C7 | H23 | sing | 1.09Å | 1.10Å | |
O12 | H24 | sing | 0.97Å | 0.95Å | |
O10 | H25 | sing | 0.97Å | 0.95Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O11 | P9 | O8 | 100.4° | 109.5° |
O11 | P9 | O10 | 112.1° | 109.5° |
O11 | P9 | O12 | 117.1° | 109.5° |
O8 | P9 | O10 | 109.2° | 109.5° |
O8 | P9 | O12 | 102.4° | 109.5° |
P9 | O8 | C7 | 121.1° | 123.0° |
O10 | P9 | O12 | 113.9° | 109.5° |
P9 | O10 | H25 | 109.5° | 114.0° |
P9 | O12 | H24 | 109.5° | 114.0° |
O8 | C7 | C6 | 103.6° | 109.5° |
O8 | C7 | H22 | 110.9° | 109.5° |
O8 | C7 | H23 | 110.9° | 109.5° |
O14 | C6 | C7 | 108.4° | 109.5° |
O14 | C6 | C5 | 107.8° | 109.4° |
O14 | C6 | H20 | 110.8° | 109.5° |
C6 | O14 | H21 | 109.5° | 114.0° |
C7 | C6 | C5 | 110.3° | 109.5° |
C7 | C6 | H20 | 109.7° | 109.5° |
C6 | C7 | H22 | 110.9° | 109.4° |
C6 | C7 | H23 | 110.9° | 109.5° |
C6 | C5 | C3 | 109.2° | 109.5° |
C6 | C5 | O13 | 107.8° | 109.4° |
C6 | C5 | H18 | 109.6° | 109.5° |
C5 | C6 | H20 | 109.8° | 109.5° |
N | CA | CB | 110.2° | 109.5° |
N | CA | C1 | 114.4° | 109.4° |
CA | N | H1 | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
N | CA | H4 | 108.8° | 109.5° |
CG | CD | CE | 101.8° | 109.5° |
CD | CG | CB | 111.8° | 109.5° |
CD | CG | H7 | 108.9° | 109.5° |
CD | CG | H8 | 108.9° | 109.5° |
CG | CD | H9 | 111.4° | 109.4° |
CG | CD | H10 | 111.4° | 109.5° |
CD | CE | NZ | 117.1° | 109.5° |
CE | CD | H9 | 111.4° | 109.5° |
CE | CD | H10 | 111.4° | 109.5° |
CD | CE | H11 | 107.5° | 109.5° |
CD | CE | H12 | 107.5° | 109.5° |
O4 | C3 | C5 | 122.4° | 120.1° |
O4 | C3 | C2 | 120.4° | 120.0° |
CE | NZ | C2 | 108.5° | 111.0° |
NZ | CE | H11 | 107.5° | 109.5° |
NZ | CE | H12 | 107.5° | 109.5° |
CE | NZ | H13 | 109.7° | 111.0° |
NZ | C2 | C3 | 111.2° | 109.5° |
C2 | NZ | H13 | 109.7° | 111.0° |
NZ | C2 | H16 | 109.0° | 109.5° |
NZ | C2 | H17 | 109.0° | 109.5° |
CG | CB | CA | 107.0° | 109.4° |
CG | CB | H5 | 110.1° | 109.5° |
CG | CB | H6 | 110.1° | 109.5° |
CB | CG | H7 | 108.9° | 109.5° |
CB | CG | H8 | 108.9° | 109.5° |
O | C1 | CA | 120.1° | 120.0° |
O | C1 | OXT | 119.9° | 120.0° |
CB | CA | C1 | 107.2° | 109.5° |
CB | CA | H4 | 107.9° | 109.5° |
CA | CB | H5 | 110.1° | 109.4° |
CA | CB | H6 | 110.1° | 109.5° |
C5 | C3 | C2 | 117.2° | 119.9° |
C3 | C5 | O13 | 109.7° | 109.5° |
C3 | C5 | H18 | 109.8° | 109.5° |
C3 | C2 | H16 | 109.0° | 109.5° |
C3 | C2 | H17 | 109.1° | 109.5° |
O13 | C5 | H18 | 110.7° | 109.5° |
C5 | O13 | H19 | 109.5° | 114.0° |
C1 | CA | H4 | 108.1° | 109.4° |
CA | C1 | OXT | 119.9° | 120.0° |
H1 | N | H2 | 109.4° | 111.0° |
H5 | CB | H6 | 109.5° | 109.5° |
H7 | CG | H8 | 109.5° | 109.4° |
H9 | CD | H10 | 109.5° | 109.5° |
H11 | CE | H12 | 109.4° | 109.4° |
C1 | OXT | HXT | 109.5° | 117.0° |
H16 | C2 | H17 | 109.5° | 109.5° |
H22 | C7 | H23 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O11 | P9 | O8 | O10 | 118.0° | 120.0° |
O11 | P9 | O8 | O12 | 121.0° | 120.0° |
O11 | P9 | O10 | O12 | 135.8° | 120.0° |
O11 | P9 | O8 | C7 | 157.6° | 55.0° |
O11 | P9 | O12 | H24 | 0.0° | 179.9° |
O11 | P9 | O10 | H25 | 0.0° | 60.0° |
O8 | P9 | O10 | O12 | 113.8° | 120.0° |
P9 | O8 | C7 | C6 | 158.9° | 180.0° |
P9 | O8 | C7 | H22 | 82.0° | 60.0° |
P9 | O8 | C7 | H23 | 39.8° | 60.0° |
O8 | P9 | O12 | H24 | 108.7° | 59.9° |
O8 | P9 | O10 | H25 | 110.4° | 180.0° |
O10 | P9 | O8 | C7 | 39.6° | 175.0° |
O10 | P9 | O12 | H24 | 133.5° | 60.1° |
O12 | P9 | O8 | C7 | 81.4° | 65.0° |
O12 | P9 | O10 | H25 | 135.8° | 60.0° |
O8 | C7 | C6 | O14 | 51.2° | 65.1° |
O8 | C7 | C6 | H22 | 119.0° | 120.0° |
O8 | C7 | C6 | H23 | 119.1° | 120.1° |
O8 | C7 | C6 | C5 | 169.1° | 175.0° |
O8 | C7 | C6 | H20 | 69.9° | 55.0° |
O8 | C7 | H22 | H23 | 122.7° | 120.0° |
O14 | C6 | C7 | C5 | 117.9° | 119.9° |
O14 | C6 | C7 | H20 | 121.1° | 120.0° |
O14 | C6 | C5 | H20 | 120.8° | 120.0° |
O14 | C6 | C5 | C3 | 72.2° | 60.1° |
O14 | C6 | C5 | O13 | 168.7° | 180.0° |
O14 | C6 | C5 | H18 | 48.1° | 60.0° |
O14 | C6 | C7 | H22 | 67.8° | 175.0° |
O14 | C6 | C7 | H23 | 170.3° | 55.0° |
C7 | C6 | C5 | H20 | 121.0° | 120.1° |
C7 | C6 | C5 | C3 | 169.6° | 180.0° |
C7 | C6 | C5 | O13 | 50.5° | 60.0° |
C7 | C6 | C5 | H18 | 70.1° | 59.9° |
C7 | C6 | O14 | H21 | 160.5° | 59.9° |
C6 | C7 | H22 | H23 | 122.8° | 120.0° |
C6 | C5 | C3 | O4 | 59.4° | 99.9° |
C6 | C5 | C3 | O13 | 118.0° | 119.9° |
C6 | C5 | C3 | H18 | 120.2° | 120.1° |
C6 | C5 | C3 | C2 | 121.9° | 80.1° |
C6 | C5 | O13 | H18 | 119.9° | 120.0° |
C6 | C5 | O13 | H19 | 180.0° | 60.1° |
C5 | C6 | O14 | H21 | 41.1° | 60.1° |
C5 | C6 | C7 | H22 | 50.0° | 55.1° |
C5 | C6 | C7 | H23 | 71.9° | 64.9° |
N | CA | CB | CG | 66.4° | 65.0° |
N | CA | C1 | O | 37.5° | 20.0° |
N | CA | CB | C1 | 125.1° | 120.0° |
N | CA | CB | H4 | 118.7° | 120.0° |
N | CA | C1 | H4 | 121.4° | 120.0° |
CA | N | H1 | H2 | 120.0° | 124.0° |
N | CA | CB | H5 | 174.0° | 54.9° |
N | CA | CB | H6 | 53.3° | 175.0° |
N | CA | C1 | OXT | 142.5° | 160.1° |
CG | CD | CE | H9 | 118.7° | 119.9° |
CG | CD | CE | H10 | 118.8° | 120.0° |
CG | CD | CE | NZ | 147.8° | 180.0° |
CD | CG | CB | H7 | 120.4° | 120.0° |
CD | CG | CB | H8 | 120.4° | 120.0° |
CD | CG | CB | CA | 175.2° | 180.0° |
CD | CG | CB | H5 | 65.2° | 60.1° |
CD | CG | CB | H6 | 55.6° | 60.0° |
CD | CG | H7 | H8 | 119.0° | 120.0° |
CG | CD | H9 | H10 | 123.6° | 120.0° |
CG | CD | CE | H11 | 91.0° | 60.0° |
CG | CD | CE | H12 | 26.7° | 60.0° |
CD | CE | NZ | H11 | 121.1° | 120.0° |
CD | CE | NZ | H12 | 121.1° | 120.0° |
CD | CE | NZ | C2 | 169.1° | 180.0° |
CE | CD | CG | CB | 141.6° | 180.0° |
CE | CD | CG | H7 | 98.0° | 60.0° |
CE | CD | CG | H8 | 21.3° | 60.0° |
CE | CD | H9 | H10 | 123.6° | 120.1° |
CD | CE | H11 | H12 | 116.5° | 120.0° |
CD | CE | NZ | H13 | 71.0° | 56.1° |
O4 | C3 | C2 | NZ | 51.4° | 0.0° |
O4 | C3 | C5 | C2 | 178.7° | 180.0° |
O4 | C3 | C5 | O13 | 177.4° | 20.0° |
O4 | C3 | C2 | H16 | 171.6° | 120.0° |
O4 | C3 | C2 | H17 | 68.9° | 120.0° |
O4 | C3 | C5 | H18 | 60.8° | 140.0° |
CE | NZ | C2 | H13 | 119.9° | 123.9° |
CE | NZ | C2 | C3 | 141.1° | 180.0° |
NZ | CE | CD | H9 | 29.1° | 60.1° |
NZ | CE | CD | H10 | 93.4° | 60.0° |
NZ | CE | H11 | H12 | 116.5° | 120.0° |
CE | NZ | C2 | H16 | 98.7° | 60.0° |
CE | NZ | C2 | H17 | 20.8° | 60.0° |
NZ | C2 | C3 | C5 | 129.9° | 180.0° |
NZ | C2 | C3 | H16 | 120.2° | 120.0° |
NZ | C2 | C3 | H17 | 120.3° | 120.0° |
C2 | NZ | CE | H11 | 48.0° | 60.0° |
C2 | NZ | CE | H12 | 69.8° | 60.0° |
NZ | C2 | H16 | H17 | 119.2° | 120.0° |
CG | CB | CA | H5 | 119.6° | 120.0° |
CG | CB | CA | H6 | 119.6° | 120.0° |
CG | CB | CA | C1 | 168.6° | 175.0° |
CG | CB | CA | H4 | 52.3° | 55.0° |
CG | CB | H5 | H6 | 121.2° | 120.1° |
CB | CG | H7 | H8 | 118.9° | 120.0° |
CB | CG | CD | H9 | 99.6° | 60.0° |
CB | CG | CD | H10 | 22.9° | 60.0° |
O | C1 | CA | CB | 84.9° | 100.0° |
O | C1 | CA | OXT | 180.0° | 179.9° |
O | C1 | CA | H4 | 159.0° | 140.0° |
O | C1 | OXT | HXT | 0.0° | 0.1° |
CB | CA | C1 | H4 | 116.1° | 120.0° |
CB | CA | N | H1 | 180.0° | 176.0° |
CB | CA | N | H2 | 60.0° | 60.0° |
CA | CB | H5 | H6 | 121.1° | 120.0° |
CA | CB | CG | H7 | 54.8° | 60.0° |
CA | CB | CG | H8 | 64.4° | 60.0° |
CB | CA | C1 | OXT | 95.1° | 79.9° |
C3 | C5 | O13 | H18 | 121.3° | 120.1° |
C5 | C3 | C2 | H16 | 9.7° | 60.0° |
C5 | C3 | C2 | H17 | 109.8° | 60.0° |
C3 | C5 | O13 | H19 | 61.2° | 59.9° |
C3 | C5 | C6 | H20 | 48.7° | 59.9° |
C2 | C3 | C5 | O13 | 4.0° | 160.0° |
C3 | C2 | NZ | H13 | 21.2° | 56.1° |
C3 | C2 | H16 | H17 | 119.2° | 120.0° |
C2 | C3 | C5 | H18 | 117.9° | 40.0° |
O13 | C5 | C6 | H20 | 70.5° | 60.0° |
C1 | CA | N | H1 | 59.2° | 64.0° |
C1 | CA | N | H2 | 60.8° | 60.0° |
C1 | CA | CB | H5 | 49.0° | 65.0° |
C1 | CA | CB | H6 | 71.8° | 55.0° |
CA | C1 | OXT | HXT | 180.0° | 180.0° |
H1 | N | CA | H4 | 61.9° | 56.0° |
H2 | N | CA | H4 | 178.2° | 179.9° |
H4 | CA | CB | H5 | 67.3° | 175.0° |
H4 | CA | CB | H6 | 172.0° | 65.0° |
H4 | CA | C1 | OXT | 21.0° | 40.1° |
H5 | CB | CG | H7 | 174.4° | 179.9° |
H5 | CB | CG | H8 | 55.2° | 60.0° |
H6 | CB | CG | H7 | 64.8° | 60.0° |
H6 | CB | CG | H8 | 176.0° | 180.0° |
H7 | CG | CD | H9 | 20.7° | 180.0° |
H7 | CG | CD | H10 | 143.2° | 60.0° |
H8 | CG | CD | H9 | 140.1° | 60.0° |
H8 | CG | CD | H10 | 97.5° | 180.0° |
H9 | CD | CE | H11 | 150.2° | 179.9° |
H9 | CD | CE | H12 | 92.0° | 60.0° |
H10 | CD | CE | H11 | 27.7° | 60.0° |
H10 | CD | CE | H12 | 145.5° | 180.0° |
H11 | CE | NZ | H13 | 167.9° | 176.1° |
H12 | CE | NZ | H13 | 50.1° | 64.0° |
H13 | NZ | C2 | H16 | 141.5° | 176.1° |
H13 | NZ | C2 | H17 | 99.0° | 64.0° |
H18 | C5 | O13 | H19 | 60.1° | 180.0° |
H18 | C5 | C6 | H20 | 168.9° | 180.0° |
H20 | C6 | O14 | H21 | 79.1° | 180.0° |
H20 | C6 | C7 | H22 | 171.0° | 65.0° |
H20 | C6 | C7 | H23 | 49.1° | 175.1° |