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Summary Geometry Related PDB entries

L4Z

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C6	N1	sing	1.47Å	1.46Å
N2	N1	sing	1.40Å	1.36Å	Aromatic
N2	C1	doub	1.31Å	1.33Å	Aromatic
N1	C3	sing	1.35Å	1.35Å	Aromatic
C	C1	sing	1.51Å	1.50Å
C1	C2	sing	1.40Å	1.40Å	Aromatic
C3	C2	doub	1.35Å	1.37Å	Aromatic
C3	C4	sing	1.51Å	1.50Å
O	C5	doub	1.22Å	1.21Å
C5	O1	sing	1.35Å	1.36Å
C5	N	sing	1.35Å	1.35Å
C4	N	sing	1.46Å	1.45Å
C2	H1	sing	1.08Å	1.08Å
C4	H2	sing	1.09Å	1.10Å
C4	H3	sing	1.09Å	1.10Å
C6	H4	sing	1.09Å	1.10Å
C6	H5	sing	1.09Å	1.10Å
C6	H6	sing	1.09Å	1.10Å
N	H7	sing	0.97Å	1.00Å
C	H8	sing	1.09Å	1.10Å
C	H9	sing	1.09Å	1.10Å
C	H10	sing	1.09Å	1.10Å
O1	H11	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	N1	N2	119.3°	126.1°
C6	N1	C3	128.7°	126.0°
N1	C6	H4	109.5°	109.5°
N1	C6	H5	109.5°	109.4°
N1	C6	H6	109.5°	109.5°
N1	N2	C1	104.8°	108.2°
N2	N1	C3	112.1°	107.9°
N2	C1	C	120.4°	125.9°
N2	C1	C2	111.1°	108.2°
N1	C3	C2	106.4°	107.8°
N1	C3	C4	122.2°	126.1°
C	C1	C2	128.5°	125.9°
C1	C	H8	109.5°	109.5°
C1	C	H9	109.5°	109.5°
C1	C	H10	109.5°	109.4°
C1	C2	C3	105.6°	107.9°
C1	C2	H1	127.2°	126.1°
C2	C3	C4	131.4°	126.1°
C3	C2	H1	127.2°	126.0°
C3	C4	N	107.2°	109.5°
C3	C4	H2	110.0°	109.5°
C3	C4	H3	110.0°	109.4°
O	C5	O1	120.7°	120.0°
O	C5	N	125.2°	120.0°
O1	C5	N	114.1°	120.0°
C5	O1	H11	109.5°	117.0°
C5	N	C4	121.5°	120.0°
C5	N	H7	119.2°	120.0°
N	C4	H2	110.0°	109.5°
N	C4	H3	110.0°	109.4°
C4	N	H7	119.3°	120.0°
H2	C4	H3	109.5°	109.5°
H4	C6	H5	109.4°	109.5°
H4	C6	H6	109.5°	109.5°
H5	C6	H6	109.5°	109.5°
H8	C	H9	109.5°	109.5°
H8	C	H10	109.5°	109.4°
H9	C	H10	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	N1	N2	C3	180.0°	179.7°
C6	N1	N2	C1	179.8°	179.8°
C6	N1	C3	C2	179.7°	180.0°
C6	N1	C3	C4	1.6°	0.1°
N1	C6	H4	H5	120.0°	119.9°
N1	C6	H4	H6	120.0°	120.0°
N1	C6	H5	H6	120.0°	120.0°
N1	N2	C1	C	179.9°	179.9°
N1	N2	C1	C2	0.1°	0.4°
N2	N1	C3	C2	0.2°	0.3°
N2	N1	C3	C4	178.4°	179.8°
N2	N1	C6	H4	0.0°	90.3°
N2	N1	C6	H5	120.0°	29.7°
N2	N1	C6	H6	120.0°	149.7°
C1	N2	N1	C3	0.2°	0.5°
N2	C1	C	C2	179.9°	179.7°
N2	C1	C2	C3	0.1°	0.2°
N2	C1	C2	H1	179.9°	179.7°
N2	C1	C	H8	0.0°	89.7°
N2	C1	C	H9	120.0°	30.4°
N2	C1	C	H10	120.0°	150.3°
N1	C3	C2	C1	0.2°	0.0°
N1	C3	C2	C4	178.5°	179.9°
N1	C3	C4	N	76.2°	85.0°
N1	C3	C2	H1	179.8°	180.0°
N1	C3	C4	H2	164.1°	35.1°
N1	C3	C4	H3	43.4°	155.1°
C3	N1	C6	H4	180.0°	90.0°
C3	N1	C6	H5	60.0°	150.0°
C3	N1	C6	H6	60.0°	30.0°
C	C1	C2	C3	180.0°	180.0°
C	C1	C2	H1	0.0°	0.0°
C1	C	H8	H9	120.0°	120.0°
C1	C	H8	H10	120.0°	120.0°
C1	C	H9	H10	120.0°	120.0°
C1	C2	C3	H1	180.0°	179.9°
C1	C2	C3	C4	178.3°	179.9°
C2	C1	C	H8	179.9°	90.0°
C2	C1	C	H9	59.9°	150.0°
C2	C1	C	H10	60.1°	30.0°
C2	C3	C4	N	102.0°	94.9°
C2	C3	C4	H2	17.6°	145.1°
C2	C3	C4	H3	138.3°	25.1°
C3	C4	N	C5	123.1°	180.0°
C3	C4	N	H2	119.6°	120.0°
C3	C4	N	H3	119.7°	119.9°
C4	C3	C2	H1	1.7°	0.2°
C3	C4	H2	H3	121.0°	119.9°
C3	C4	N	H7	56.9°	0.0°
O	C5	O1	N	178.8°	179.9°
O	C5	N	C4	2.1°	0.0°
O	C5	N	H7	177.9°	180.0°
O	C5	O1	H11	0.0°	0.0°
O1	C5	N	C4	179.2°	180.0°
O1	C5	N	H7	0.8°	0.0°
C5	N	C4	H7	180.0°	180.0°
C5	N	C4	H2	117.3°	60.0°
C5	N	C4	H3	3.4°	60.0°
N	C5	O1	H11	178.8°	180.0°
N	C4	H2	H3	121.1°	120.0°
H2	C4	N	H7	62.7°	120.0°
H3	C4	N	H7	176.6°	120.0°
H4	C6	H5	H6	119.9°	120.0°
H8	C	H9	H10	120.0°	120.0°

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PDB entries from 2024-07-17

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