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Summary Geometry Related PDB entries

L3Y

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O11	S02	doub	1.42Å	1.49Å
O03	S02	doub	1.42Å	1.45Å
S02	C01	sing	1.81Å	1.80Å
S02	C04	sing	1.76Å	1.79Å
C04	C05	doub	1.38Å	1.38Å	Aromatic
C04	C10	sing	1.38Å	1.37Å	Aromatic
C05	C06	sing	1.38Å	1.38Å	Aromatic
C10	C09	doub	1.38Å	1.39Å	Aromatic
C06	C07	doub	1.40Å	1.38Å	Aromatic
C09	C07	sing	1.40Å	1.40Å	Aromatic
C07	C08	sing	1.47Å	1.51Å
C01	H1	sing	1.09Å	1.10Å
C01	H2	sing	1.09Å	1.10Å
C01	H3	sing	1.09Å	1.10Å
C05	H4	sing	1.08Å	1.08Å
C06	H5	sing	1.08Å	1.08Å
C08	H6	sing	1.08Å	1.08Å
C09	H9	sing	1.08Å	1.08Å
C10	H10	sing	1.08Å	1.08Å
C08	O1	doub	1.21Å	1.29Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O11	S02	O03	120.9°	121.1°
O11	S02	C01	100.2°	110.5°
O11	S02	C04	112.8°	104.3°
O03	S02	C01	109.7°	110.5°
O03	S02	C04	108.2°	104.3°
C01	S02	C04	103.5°	104.4°
S02	C01	H1	109.5°	109.4°
S02	C01	H2	109.5°	109.5°
S02	C01	H3	109.4°	109.4°
S02	C04	C05	116.2°	119.8°
S02	C04	C10	119.8°	119.8°
C05	C04	C10	124.0°	120.3°
C04	C05	C06	117.7°	120.2°
C04	C05	H4	121.2°	119.9°
C04	C10	C09	118.0°	120.2°
C04	C10	H10	121.0°	119.9°
C05	C06	C07	120.4°	119.8°
C06	C05	H4	121.2°	119.9°
C05	C06	H5	119.8°	120.0°
C10	C09	C07	119.5°	119.8°
C10	C09	H9	120.3°	120.1°
C09	C10	H10	121.0°	119.9°
C06	C07	C09	120.3°	119.7°
C06	C07	C08	118.5°	120.2°
C07	C06	H5	119.8°	120.2°
C09	C07	C08	121.0°	120.2°
C07	C09	H9	120.2°	120.1°
C07	C08	H6	118.5°	120.0°
C07	C08	O1	123.1°	120.0°
H1	C01	H2	109.5°	109.5°
H1	C01	H3	109.5°	109.5°
H2	C01	H3	109.5°	109.5°
H6	C08	O1	118.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O11	S02	O03	C01	115.6°	131.5°
O11	S02	O03	C04	132.1°	116.8°
O11	S02	C01	C04	116.6°	111.6°
O11	S02	C04	C05	33.3°	26.0°
O11	S02	C04	C10	147.5°	153.6°
O11	S02	C01	H1	180.0°	171.6°
O11	S02	C01	H2	60.0°	68.4°
O11	S02	C01	H3	60.0°	51.7°
O03	S02	C01	C04	115.3°	111.6°
O03	S02	C04	C05	169.7°	153.9°
O03	S02	C04	C10	11.1°	25.7°
O03	S02	C01	H1	51.9°	51.6°
O03	S02	C01	H2	68.1°	68.4°
O03	S02	C01	H3	171.9°	171.6°
C01	S02	C04	C05	74.0°	90.1°
C01	S02	C04	C10	105.2°	90.3°
S02	C01	H1	H2	120.0°	120.0°
S02	C01	H1	H3	120.0°	119.9°
S02	C01	H2	H3	120.0°	120.0°
S02	C04	C05	C10	179.2°	179.6°
S02	C04	C05	C06	177.7°	180.0°
S02	C04	C10	C09	178.1°	179.8°
C04	S02	C01	H1	63.4°	60.0°
C04	S02	C01	H2	176.6°	180.0°
C04	S02	C01	H3	56.6°	60.0°
S02	C04	C05	H4	2.3°	0.1°
S02	C04	C10	H10	1.9°	0.1°
C04	C05	C06	H4	180.0°	180.0°
C05	C04	C10	C09	1.0°	0.6°
C04	C05	C06	C07	0.3°	0.0°
C04	C05	C06	H5	179.7°	179.9°
C05	C04	C10	H10	179.0°	179.7°
C10	C04	C05	C06	1.4°	0.3°
C04	C10	C09	H10	180.0°	179.8°
C04	C10	C09	C07	0.6°	0.5°
C10	C04	C05	H4	178.5°	179.7°
C04	C10	C09	H9	179.4°	179.7°
C05	C06	C07	H5	180.0°	179.9°
C05	C06	C07	C09	1.2°	0.1°
C05	C06	C07	C08	176.7°	179.9°
C10	C09	C07	C06	1.6°	0.2°
C10	C09	C07	H9	180.0°	179.8°
C10	C09	C07	C08	177.0°	179.7°
C06	C07	C09	C08	175.3°	179.9°
C07	C06	C05	H4	179.7°	180.0°
C06	C07	C08	H6	13.4°	180.0°
C06	C07	C09	H9	178.4°	180.0°
C06	C07	C08	O1	166.6°	0.1°
C09	C07	C06	H5	178.8°	180.0°
C09	C07	C08	H6	162.0°	0.1°
C07	C09	C10	H10	179.5°	179.8°
C09	C07	C08	O1	18.0°	180.0°
C08	C07	C06	H5	3.4°	0.1°
C07	C08	H6	O1	180.0°	179.9°
C08	C07	C09	H9	3.0°	0.1°
H1	C01	H2	H3	120.0°	120.0°
H4	C05	C06	H5	0.3°	0.1°
H9	C09	C10	H10	0.5°	0.1°

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