L3X
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.48Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| O | C | doub | 1.21Å | 1.24Å | |
| C | N3' | sing | 1.35Å | 1.36Å | |
| N3' | C3' | sing | 1.46Å | 1.48Å | |
| C3' | C4' | sing | 1.54Å | 1.51Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.51Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.34Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.31Å | Aromatic |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| C1' | N9 | sing | 1.47Å | 1.51Å | |
| N9 | C4 | sing | 1.37Å | 1.36Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.34Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.35Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.33Å | Aromatic |
| N6 | C6 | sing | 1.38Å | 1.34Å | |
| C6 | N1 | doub | 1.33Å | 1.34Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| OP2 | H2 | sing | 0.97Å | 0.95Å | |
| C1' | H3 | sing | 1.09Å | 1.10Å | |
| C2' | H4 | sing | 1.09Å | 1.10Å | |
| O2' | H5 | sing | 0.97Å | 0.95Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| N3' | H7 | sing | 0.97Å | 1.00Å | |
| C4' | H8 | sing | 1.09Å | 1.10Å | |
| C5' | H9 | sing | 1.09Å | 1.10Å | |
| C5' | H10 | sing | 1.09Å | 1.10Å | |
| C8 | H11 | sing | 1.08Å | 1.08Å | |
| N6 | H12 | sing | 0.97Å | 1.00Å | |
| N6 | H13 | sing | 0.97Å | 1.00Å | |
| C2 | H14 | sing | 1.08Å | 1.08Å | |
| CA | H15 | sing | 1.09Å | 1.10Å | |
| CA | H16 | sing | 1.09Å | 1.10Å | |
| N | H17 | sing | 1.01Å | 1.00Å | |
| N | H18 | sing | 1.01Å | 1.00Å | |
| P | OP3 | sing | 1.61Å | 1.56Å | |
| OP3 | H1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | C | 114.5° | 109.5° |
| N | CA | H15 | 108.2° | 109.4° |
| N | CA | H16 | 108.2° | 109.5° |
| CA | N | H17 | 109.5° | 111.0° |
| CA | N | H18 | 109.4° | 111.0° |
| CA | C | O | 120.7° | 120.0° |
| CA | C | N3' | 114.6° | 120.0° |
| C | CA | H15 | 108.2° | 109.4° |
| C | CA | H16 | 108.2° | 109.5° |
| O | C | N3' | 124.7° | 120.0° |
| C | N3' | C3' | 122.7° | 120.0° |
| C | N3' | H7 | 118.6° | 120.0° |
| N3' | C3' | C4' | 108.0° | 110.5° |
| N3' | C3' | C2' | 115.4° | 110.6° |
| N3' | C3' | H6 | 110.5° | 110.5° |
| C3' | N3' | H7 | 118.7° | 120.0° |
| C4' | C3' | C2' | 102.6° | 104.2° |
| C3' | C4' | C5' | 108.3° | 109.9° |
| C3' | C4' | O4' | 105.7° | 107.4° |
| C4' | C3' | H6 | 110.1° | 110.5° |
| C3' | C4' | H8 | 111.2° | 109.9° |
| C3' | C2' | O2' | 110.0° | 110.9° |
| C3' | C2' | C1' | 103.4° | 102.1° |
| C3' | C2' | H4 | 112.1° | 110.9° |
| C2' | C3' | H6 | 109.9° | 110.3° |
| OP1 | P | OP2 | 120.3° | 109.5° |
| OP1 | P | O5' | 109.9° | 109.5° |
| OP1 | P | OP3 | 157.7° | 109.5° |
| C4' | C5' | O5' | 108.0° | 109.5° |
| C5' | C4' | O4' | 108.4° | 109.9° |
| C5' | C4' | H8 | 111.1° | 110.0° |
| C4' | C5' | H9 | 109.8° | 109.4° |
| C4' | C5' | H10 | 109.8° | 109.5° |
| C5' | O5' | P | 120.8° | 123.0° |
| O5' | C5' | H9 | 109.8° | 109.5° |
| O5' | C5' | H10 | 109.8° | 109.5° |
| C4' | O4' | C1' | 108.8° | 106.9° |
| O4' | C4' | H8 | 112.0° | 109.7° |
| O2' | C2' | C1' | 104.7° | 110.9° |
| O2' | C2' | H4 | 113.8° | 110.8° |
| C2' | O2' | H5 | 109.5° | 114.0° |
| C2' | C1' | O4' | 106.1° | 103.6° |
| C2' | C1' | N9 | 111.8° | 110.6° |
| C2' | C1' | H3 | 109.1° | 110.6° |
| C1' | C2' | H4 | 112.2° | 110.9° |
| OP2 | P | O5' | 108.4° | 109.5° |
| P | OP2 | H2 | 109.5° | 114.0° |
| OP2 | P | OP3 | 76.5° | 109.5° |
| O5' | P | OP3 | 74.6° | 109.4° |
| N7 | C8 | N9 | 109.0° | 109.9° |
| C8 | N7 | C5 | 108.2° | 109.5° |
| N7 | C8 | H11 | 125.5° | 125.0° |
| C8 | N9 | C1' | 127.2° | 126.3° |
| C8 | N9 | C4 | 106.3° | 107.5° |
| N9 | C8 | H11 | 125.5° | 125.0° |
| N7 | C5 | C4 | 108.9° | 107.1° |
| N7 | C5 | C6 | 132.0° | 134.7° |
| O4' | C1' | N9 | 110.7° | 110.6° |
| O4' | C1' | H3 | 109.8° | 110.6° |
| C1' | N9 | C4 | 126.5° | 126.2° |
| N9 | C1' | H3 | 109.2° | 110.6° |
| N9 | C4 | C5 | 107.6° | 106.0° |
| N9 | C4 | N3 | 131.8° | 135.0° |
| C4 | C5 | C6 | 119.1° | 118.2° |
| C5 | C4 | N3 | 120.6° | 119.1° |
| C5 | C6 | N6 | 119.4° | 120.8° |
| C5 | C6 | N1 | 120.5° | 118.4° |
| C4 | N3 | C2 | 120.1° | 120.7° |
| N6 | C6 | N1 | 120.0° | 120.8° |
| C6 | N6 | H12 | 109.5° | 120.0° |
| C6 | N6 | H13 | 109.5° | 120.0° |
| C6 | N1 | C2 | 119.8° | 121.2° |
| N3 | C2 | N1 | 119.8° | 122.5° |
| N3 | C2 | H14 | 120.1° | 118.8° |
| N1 | C2 | H14 | 120.1° | 118.8° |
| H9 | C5' | H10 | 109.5° | 109.5° |
| H12 | N6 | H13 | 109.4° | 120.1° |
| H15 | CA | H16 | 109.4° | 109.5° |
| H17 | N | H18 | 109.5° | 110.9° |
| P | OP3 | H1 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | C | H15 | 120.7° | 119.9° |
| N | CA | C | H16 | 120.8° | 120.0° |
| N | CA | C | O | 34.8° | 0.0° |
| N | CA | C | N3' | 145.7° | 179.9° |
| N | CA | H15 | H16 | 117.7° | 120.0° |
| CA | N | H17 | H18 | 120.0° | 123.9° |
| CA | C | O | N3' | 179.4° | 180.0° |
| CA | C | N3' | C3' | 173.9° | 180.0° |
| CA | C | N3' | H7 | 6.1° | 0.0° |
| C | CA | H15 | H16 | 117.7° | 120.0° |
| C | CA | N | H17 | 180.0° | 180.0° |
| C | CA | N | H18 | 60.0° | 56.1° |
| O | C | N3' | C3' | 5.6° | 0.0° |
| O | C | N3' | H7 | 174.4° | 180.0° |
| O | C | CA | H15 | 155.5° | 119.9° |
| O | C | CA | H16 | 86.0° | 120.0° |
| C | N3' | C3' | H7 | 180.0° | 180.0° |
| C | N3' | C3' | C4' | 81.5° | 155.0° |
| C | N3' | C3' | C2' | 164.4° | 90.1° |
| C | N3' | C3' | H6 | 38.9° | 32.4° |
| N3' | C | CA | H15 | 25.0° | 60.0° |
| N3' | C | CA | H16 | 93.5° | 60.0° |
| N3' | C3' | C4' | C2' | 122.3° | 118.8° |
| N3' | C3' | C4' | H6 | 120.7° | 122.7° |
| N3' | C3' | C2' | H6 | 125.7° | 122.6° |
| N3' | C3' | C4' | C5' | 88.8° | 119.8° |
| N3' | C3' | C4' | O4' | 155.3° | 120.7° |
| N3' | C3' | C2' | O2' | 41.8° | 20.3° |
| N3' | C3' | C2' | C1' | 153.1° | 97.9° |
| N3' | C3' | C2' | H4 | 85.9° | 143.9° |
| N3' | C3' | C4' | H8 | 33.5° | 1.4° |
| C4' | C3' | C2' | H6 | 117.1° | 118.6° |
| C3' | C4' | C5' | O4' | 114.2° | 118.0° |
| C3' | C4' | C5' | H8 | 122.4° | 121.1° |
| C3' | C4' | C5' | O5' | 120.5° | 175.0° |
| C3' | C4' | O4' | H8 | 121.3° | 119.4° |
| C4' | C3' | C2' | O2' | 75.4° | 139.1° |
| C4' | C3' | C2' | C1' | 35.9° | 20.9° |
| C3' | C4' | O4' | C1' | 17.1° | 26.3° |
| C4' | C3' | C2' | H4 | 156.9° | 97.3° |
| C4' | C3' | N3' | H7 | 98.4° | 25.0° |
| C3' | C4' | C5' | H9 | 119.7° | 55.0° |
| C3' | C4' | C5' | H10 | 0.8° | 65.0° |
| C2' | C3' | C4' | C5' | 148.9° | 121.4° |
| C2' | C3' | C4' | O4' | 32.9° | 1.9° |
| C3' | C2' | O2' | C1' | 110.5° | 112.7° |
| C3' | C2' | O2' | H4 | 126.7° | 123.7° |
| C3' | C2' | C1' | H4 | 121.0° | 118.2° |
| C3' | C2' | C1' | O4' | 26.3° | 37.0° |
| C3' | C2' | C1' | N9 | 94.5° | 155.5° |
| C3' | C2' | C1' | H3 | 144.6° | 81.6° |
| C3' | C2' | O2' | H5 | 180.0° | 174.1° |
| C2' | C3' | N3' | H7 | 15.6° | 89.9° |
| C2' | C3' | C4' | H8 | 88.8° | 117.4° |
| OP1 | P | O5' | C5' | 23.2° | 55.0° |
| OP1 | P | OP2 | O5' | 127.5° | 120.0° |
| OP1 | P | OP2 | OP3 | 164.1° | 120.0° |
| OP1 | P | O5' | OP3 | 157.1° | 120.0° |
| OP1 | P | OP2 | H2 | 0.0° | 60.0° |
| OP1 | P | OP3 | H1 | 0.0° | 180.0° |
| C4' | C5' | O5' | H9 | 119.8° | 120.0° |
| C4' | C5' | O5' | H10 | 119.8° | 120.0° |
| C5' | C4' | O4' | H8 | 122.9° | 121.1° |
| C4' | C5' | O5' | P | 169.6° | 180.0° |
| C5' | C4' | O4' | C1' | 133.0° | 145.8° |
| C5' | C4' | C3' | H6 | 31.9° | 2.9° |
| C4' | C5' | H9 | H10 | 120.7° | 120.0° |
| O5' | C5' | C4' | O4' | 6.3° | 67.0° |
| C5' | O5' | P | OP2 | 110.1° | 175.0° |
| O5' | C5' | C4' | H8 | 117.1° | 53.9° |
| O5' | C5' | H9 | H10 | 120.7° | 120.0° |
| C5' | O5' | P | OP3 | 179.8° | 65.0° |
| C4' | O4' | C1' | C2' | 6.0° | 39.9° |
| C4' | O4' | C1' | N9 | 115.5° | 158.4° |
| C4' | O4' | C1' | H3 | 123.8° | 78.7° |
| O4' | C4' | C3' | H6 | 84.1° | 116.6° |
| O4' | C4' | C5' | H9 | 126.1° | 173.0° |
| O4' | C4' | C5' | H10 | 113.5° | 53.0° |
| O2' | C2' | C1' | H4 | 123.9° | 123.6° |
| O2' | C2' | C1' | O4' | 88.9° | 155.1° |
| O2' | C2' | C1' | N9 | 150.4° | 86.3° |
| O2' | C2' | C1' | H3 | 29.4° | 36.6° |
| O2' | C2' | C3' | H6 | 167.5° | 102.3° |
| C2' | C1' | N9 | C8 | 67.1° | 92.5° |
| C2' | C1' | O4' | N9 | 121.5° | 118.5° |
| C2' | C1' | O4' | H3 | 117.9° | 118.6° |
| C2' | C1' | N9 | H3 | 120.9° | 122.9° |
| C2' | C1' | N9 | C4 | 109.6° | 87.2° |
| C1' | C2' | O2' | H5 | 69.5° | 61.5° |
| C1' | C2' | C3' | H6 | 81.2° | 139.5° |
| OP2 | P | O5' | OP3 | 69.7° | 120.0° |
| OP2 | P | OP3 | H1 | 141.4° | 59.9° |
| O5' | P | OP2 | H2 | 127.5° | 180.0° |
| P | O5' | C5' | H9 | 70.6° | 60.0° |
| P | O5' | C5' | H10 | 49.9° | 60.0° |
| O5' | P | OP3 | H1 | 104.8° | 60.0° |
| N7 | C8 | N9 | H11 | 180.0° | 179.9° |
| N7 | C8 | N9 | C1' | 179.2° | 180.0° |
| N7 | C8 | N9 | C4 | 2.0° | 0.2° |
| C8 | N7 | C5 | C4 | 0.0° | 0.3° |
| C8 | N7 | C5 | C6 | 179.6° | 180.0° |
| N9 | C8 | N7 | C5 | 1.3° | 0.0° |
| C8 | N9 | C1' | O4' | 51.0° | 21.7° |
| C8 | N9 | C1' | C4 | 176.7° | 179.7° |
| C8 | N9 | C4 | C5 | 1.9° | 0.4° |
| C8 | N9 | C4 | N3 | 179.1° | 179.7° |
| C8 | N9 | C1' | H3 | 172.1° | 144.6° |
| N7 | C5 | C4 | N9 | 1.2° | 0.4° |
| N7 | C5 | C4 | C6 | 179.7° | 179.8° |
| N7 | C5 | C4 | N3 | 179.7° | 179.7° |
| N7 | C5 | C6 | N6 | 1.2° | 0.1° |
| N7 | C5 | C6 | N1 | 179.7° | 179.2° |
| C5 | N7 | C8 | H11 | 178.7° | 180.0° |
| O4' | C1' | N9 | H3 | 121.0° | 122.9° |
| O4' | C1' | N9 | C4 | 132.3° | 158.6° |
| O4' | C1' | C2' | H4 | 147.3° | 81.3° |
| C1' | O4' | C4' | H8 | 104.2° | 93.1° |
| C1' | N9 | C4 | C5 | 179.2° | 179.8° |
| C1' | N9 | C4 | N3 | 1.9° | 0.1° |
| N9 | C1' | C2' | H4 | 26.5° | 37.3° |
| C1' | N9 | C8 | H11 | 0.8° | 0.1° |
| N9 | C4 | C5 | N3 | 179.1° | 179.9° |
| N9 | C4 | C5 | C6 | 179.1° | 179.8° |
| N9 | C4 | N3 | C2 | 178.1° | 179.9° |
| C4 | N9 | C1' | H3 | 11.2° | 35.7° |
| C4 | N9 | C8 | H11 | 178.0° | 179.7° |
| C4 | C5 | C6 | N6 | 178.3° | 179.8° |
| C4 | C5 | C6 | N1 | 0.7° | 0.5° |
| C5 | C4 | N3 | C2 | 0.7° | 0.2° |
| C6 | C5 | C4 | N3 | 0.1° | 0.1° |
| C5 | C6 | N6 | N1 | 179.0° | 179.3° |
| C5 | C6 | N1 | C2 | 0.6° | 0.7° |
| C5 | C6 | N6 | H12 | 179.1° | 179.3° |
| C5 | C6 | N6 | H13 | 60.9° | 0.8° |
| C4 | N3 | C2 | N1 | 0.8° | 0.0° |
| C4 | N3 | C2 | H14 | 179.1° | 180.0° |
| N6 | C6 | N1 | C2 | 178.4° | 180.0° |
| C6 | N6 | H12 | H13 | 120.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.2° | 0.5° |
| N1 | C6 | N6 | H12 | 0.0° | 0.0° |
| N1 | C6 | N6 | H13 | 120.0° | 180.0° |
| C6 | N1 | C2 | H14 | 179.8° | 179.6° |
| N3 | C2 | N1 | H14 | 180.0° | 179.9° |
| H2 | OP2 | P | OP3 | 164.1° | 60.0° |
| H3 | C1' | C2' | H4 | 94.4° | 160.2° |
| H4 | C2' | O2' | H5 | 53.3° | 62.2° |
| H4 | C2' | C3' | H6 | 39.8° | 21.3° |
| H6 | C3' | N3' | H7 | 141.1° | 147.6° |
| H6 | C3' | C4' | H8 | 154.2° | 124.1° |
| H8 | C4' | C5' | H9 | 2.7° | 66.1° |
| H8 | C4' | C5' | H10 | 123.2° | 173.9° |
| H15 | CA | N | H17 | 59.3° | 60.1° |
| H15 | CA | N | H18 | 60.8° | 176.0° |
| H16 | CA | N | H17 | 59.2° | 60.0° |
| H16 | CA | N | H18 | 179.3° | 63.9° |
