L3U
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CD2 | CG | sing | 1.53Å | 1.52Å | |
O3' | C3' | sing | 1.43Å | 1.42Å | |
CG | CB | sing | 1.53Å | 1.53Å | |
CG | CD1 | sing | 1.53Å | 1.52Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C5' | sing | 1.53Å | 1.51Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
CB | CA | sing | 1.53Å | 1.53Å | |
O2 | C2 | doub | 1.22Å | 1.22Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C5' | O5' | sing | 1.43Å | 1.45Å | |
C1' | C2' | sing | 1.55Å | 1.52Å | |
C1' | N1 | sing | 1.47Å | 1.47Å | |
O2' | C2' | sing | 1.43Å | 1.42Å | |
C2 | N1 | sing | 1.35Å | 1.38Å | |
C2 | N3 | sing | 1.35Å | 1.39Å | |
N | CA | sing | 1.47Å | 1.48Å | |
CA | C | sing | 1.51Å | 1.54Å | |
N1 | C6 | sing | 1.37Å | 1.37Å | |
O5' | S | sing | 1.52Å | 1.59Å | |
C3U | N3 | sing | 1.46Å | 1.47Å | |
C | N3S | sing | 1.35Å | 1.43Å | |
C | O | doub | 1.21Å | 1.23Å | |
N3 | C4 | sing | 1.35Å | 1.40Å | |
N3S | S | sing | 1.66Å | 1.60Å | |
C6 | C5 | doub | 1.35Å | 1.34Å | |
O2S | S | doub | 1.42Å | 1.42Å | |
S | O1S | doub | 1.42Å | 1.42Å | |
C4 | C5 | sing | 1.42Å | 1.43Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
N | H1 | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
CA | H4 | sing | 1.09Å | 1.10Å | |
CB | H5 | sing | 1.09Å | 1.10Å | |
CB | H6 | sing | 1.09Å | 1.10Å | |
CG | H7 | sing | 1.09Å | 1.10Å | |
CD1 | H8 | sing | 1.09Å | 1.10Å | |
CD1 | H9 | sing | 1.09Å | 1.10Å | |
CD1 | H10 | sing | 1.09Å | 1.10Å | |
CD2 | H11 | sing | 1.09Å | 1.10Å | |
CD2 | H12 | sing | 1.09Å | 1.10Å | |
CD2 | H13 | sing | 1.09Å | 1.10Å | |
C1' | H14 | sing | 1.09Å | 1.10Å | |
C2' | H15 | sing | 1.09Å | 1.10Å | |
C3' | H16 | sing | 1.09Å | 1.10Å | |
C3U | H17 | sing | 1.09Å | 1.10Å | |
C3U | H18 | sing | 1.09Å | 1.10Å | |
C3U | H19 | sing | 1.09Å | 1.10Å | |
C4' | H20 | sing | 1.09Å | 1.10Å | |
C5 | H21 | sing | 1.08Å | 1.08Å | |
C5' | H22 | sing | 1.09Å | 1.10Å | |
C5' | H23 | sing | 1.09Å | 1.10Å | |
C6 | H24 | sing | 1.08Å | 1.08Å | |
N3S | H25 | sing | 0.97Å | 1.00Å | |
O2' | H26 | sing | 0.97Å | 0.95Å | |
O3' | H27 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CD2 | CG | CB | 110.2° | 109.5° |
CD2 | CG | CD1 | 110.9° | 109.5° |
CD2 | CG | H7 | 108.8° | 109.4° |
CG | CD2 | H11 | 109.5° | 109.5° |
CG | CD2 | H12 | 109.5° | 109.5° |
CG | CD2 | H13 | 109.5° | 109.4° |
O3' | C3' | C4' | 109.6° | 110.6° |
O3' | C3' | C2' | 114.1° | 110.5° |
O3' | C3' | H16 | 110.9° | 110.4° |
C3' | O3' | H27 | 109.5° | 114.0° |
CB | CG | CD1 | 109.3° | 109.5° |
CG | CB | CA | 113.6° | 109.5° |
CG | CB | H5 | 108.4° | 109.4° |
CG | CB | H6 | 108.4° | 109.5° |
CB | CG | H7 | 108.8° | 109.5° |
CD1 | CG | H7 | 108.8° | 109.5° |
CG | CD1 | H8 | 109.5° | 109.5° |
CG | CD1 | H9 | 109.5° | 109.5° |
CG | CD1 | H10 | 109.5° | 109.5° |
C3' | C4' | O4' | 106.3° | 107.3° |
C3' | C4' | C5' | 114.7° | 109.9° |
C4' | C3' | C2' | 103.1° | 104.2° |
C4' | C3' | H16 | 109.4° | 110.5° |
C3' | C4' | H20 | 108.1° | 109.9° |
O4' | C4' | C5' | 110.0° | 109.8° |
C4' | O4' | C1' | 108.7° | 106.9° |
O4' | C4' | H20 | 109.2° | 109.9° |
C4' | C5' | O5' | 106.0° | 109.5° |
C5' | C4' | H20 | 108.4° | 110.0° |
C4' | C5' | H22 | 110.3° | 109.4° |
C4' | C5' | H23 | 110.3° | 109.5° |
C3' | C2' | C1' | 100.5° | 102.1° |
C3' | C2' | O2' | 115.1° | 110.9° |
C3' | C2' | H15 | 110.1° | 110.9° |
C2' | C3' | H16 | 109.4° | 110.5° |
CB | CA | N | 111.2° | 109.5° |
CB | CA | C | 111.9° | 109.5° |
CB | CA | H4 | 108.6° | 109.5° |
CA | CB | H5 | 108.5° | 109.4° |
CA | CB | H6 | 108.4° | 109.5° |
O2 | C2 | N1 | 123.2° | 119.5° |
O2 | C2 | N3 | 121.2° | 119.5° |
O4' | C1' | C2' | 105.1° | 103.5° |
O4' | C1' | N1 | 109.2° | 110.6° |
O4' | C1' | H14 | 110.5° | 110.8° |
C5' | O5' | S | 118.9° | 114.0° |
O5' | C5' | H22 | 110.3° | 109.5° |
O5' | C5' | H23 | 110.3° | 109.5° |
C2' | C1' | N1 | 113.2° | 110.6° |
C1' | C2' | O2' | 108.3° | 110.9° |
C2' | C1' | H14 | 109.0° | 110.6° |
C1' | C2' | H15 | 110.4° | 110.9° |
C1' | N1 | C2 | 116.2° | 119.7° |
C1' | N1 | C6 | 121.2° | 119.7° |
N1 | C1' | H14 | 109.7° | 110.5° |
O2' | C2' | H15 | 111.9° | 110.8° |
C2' | O2' | H26 | 109.5° | 114.0° |
N1 | C2 | N3 | 115.5° | 121.0° |
C2 | N1 | C6 | 122.5° | 120.6° |
C2 | N3 | C3U | 117.0° | 119.9° |
C2 | N3 | C4 | 124.7° | 120.2° |
N | CA | C | 107.2° | 109.5° |
CA | N | H1 | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
N | CA | H4 | 109.3° | 109.5° |
CA | C | N3S | 116.0° | 120.0° |
CA | C | O | 125.3° | 120.0° |
C | CA | H4 | 108.5° | 109.4° |
N1 | C6 | C5 | 121.3° | 119.7° |
N1 | C6 | H24 | 119.3° | 120.1° |
O5' | S | N3S | 109.2° | 107.2° |
O5' | S | O2S | 109.5° | 106.4° |
O5' | S | O1S | 100.1° | 106.4° |
C3U | N3 | C4 | 118.4° | 119.9° |
N3 | C3U | H17 | 109.5° | 109.5° |
N3 | C3U | H18 | 109.5° | 109.5° |
N3 | C3U | H19 | 109.4° | 109.5° |
N3S | C | O | 118.6° | 120.0° |
C | N3S | S | 127.3° | 120.0° |
C | N3S | H25 | 116.3° | 120.0° |
N3 | C4 | C5 | 115.4° | 119.4° |
N3 | C4 | O4 | 119.7° | 120.3° |
N3S | S | O2S | 102.4° | 106.4° |
N3S | S | O1S | 113.8° | 106.4° |
S | N3S | H25 | 116.3° | 120.0° |
C6 | C5 | C4 | 120.5° | 119.1° |
C6 | C5 | H21 | 119.7° | 120.4° |
C5 | C6 | H24 | 119.4° | 120.2° |
O2S | S | O1S | 121.7° | 123.2° |
C5 | C4 | O4 | 124.8° | 120.3° |
C4 | C5 | H21 | 119.8° | 120.5° |
H1 | N | H2 | 109.5° | 111.0° |
H5 | CB | H6 | 109.5° | 109.5° |
H8 | CD1 | H9 | 109.5° | 109.5° |
H8 | CD1 | H10 | 109.5° | 109.5° |
H9 | CD1 | H10 | 109.5° | 109.4° |
H11 | CD2 | H12 | 109.5° | 109.5° |
H11 | CD2 | H13 | 109.5° | 109.4° |
H12 | CD2 | H13 | 109.5° | 109.5° |
H17 | C3U | H18 | 109.5° | 109.4° |
H17 | C3U | H19 | 109.5° | 109.5° |
H18 | C3U | H19 | 109.5° | 109.5° |
H22 | C5' | H23 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CD2 | CG | CB | CD1 | 122.1° | 120.0° |
CD2 | CG | CB | H7 | 119.2° | 120.0° |
CD2 | CG | CD1 | H7 | 119.6° | 120.0° |
CD2 | CG | CB | CA | 173.7° | 65.8° |
CD2 | CG | CB | H5 | 65.7° | 174.2° |
CD2 | CG | CB | H6 | 53.1° | 54.2° |
CD2 | CG | CD1 | H8 | 180.0° | 177.3° |
CD2 | CG | CD1 | H9 | 60.0° | 62.6° |
CD2 | CG | CD1 | H10 | 60.0° | 57.3° |
CG | CD2 | H11 | H12 | 120.0° | 120.1° |
CG | CD2 | H11 | H13 | 120.0° | 119.9° |
CG | CD2 | H12 | H13 | 120.0° | 120.0° |
O3' | C3' | C4' | C2' | 121.8° | 118.8° |
O3' | C3' | C4' | H16 | 121.9° | 122.5° |
O3' | C3' | C4' | O4' | 105.4° | 120.8° |
O3' | C3' | C4' | C5' | 132.8° | 119.8° |
O3' | C3' | C2' | H16 | 124.9° | 122.5° |
O3' | C3' | C2' | C1' | 85.2° | 97.9° |
O3' | C3' | C2' | O2' | 30.8° | 20.3° |
O3' | C3' | C2' | H15 | 158.4° | 143.9° |
O3' | C3' | C4' | H20 | 11.7° | 1.4° |
CB | CG | CD1 | H7 | 118.6° | 120.0° |
CG | CB | CA | H5 | 120.6° | 120.0° |
CG | CB | CA | H6 | 120.6° | 120.0° |
CG | CB | CA | N | 74.4° | 63.2° |
CG | CB | CA | C | 165.8° | 176.7° |
CG | CB | CA | H4 | 46.0° | 56.8° |
CG | CB | H5 | H6 | 118.1° | 120.0° |
CB | CG | CD1 | H8 | 58.3° | 62.6° |
CB | CG | CD1 | H9 | 178.3° | 57.4° |
CB | CG | CD1 | H10 | 61.8° | 177.4° |
CB | CG | CD2 | H11 | 180.0° | 59.9° |
CB | CG | CD2 | H12 | 60.0° | 180.0° |
CB | CG | CD2 | H13 | 60.0° | 60.0° |
CD1 | CG | CB | CA | 64.2° | 174.1° |
CD1 | CG | CB | H5 | 56.5° | 54.2° |
CD1 | CG | CB | H6 | 175.3° | 65.8° |
CG | CD1 | H8 | H9 | 120.0° | 120.1° |
CG | CD1 | H8 | H10 | 120.0° | 120.0° |
CG | CD1 | H9 | H10 | 120.0° | 120.0° |
CD1 | CG | CD2 | H11 | 58.8° | 180.0° |
CD1 | CG | CD2 | H12 | 178.8° | 60.0° |
CD1 | CG | CD2 | H13 | 61.2° | 60.0° |
C3' | C4' | O4' | C5' | 124.8° | 119.4° |
C3' | C4' | O4' | H20 | 116.4° | 119.5° |
C3' | C4' | C5' | H20 | 120.9° | 121.1° |
C4' | C3' | C2' | H16 | 116.3° | 118.7° |
C3' | C4' | O4' | C1' | 9.2° | 26.5° |
C3' | C4' | C5' | O5' | 55.8° | 175.0° |
C4' | C3' | C2' | C1' | 33.6° | 20.9° |
C4' | C3' | C2' | O2' | 149.6° | 139.1° |
C4' | C3' | C2' | H15 | 82.8° | 97.3° |
C3' | C4' | C5' | H22 | 175.2° | 55.0° |
C3' | C4' | C5' | H23 | 63.7° | 64.9° |
C4' | C3' | O3' | H27 | 180.0° | 176.3° |
O4' | C4' | C5' | H20 | 119.3° | 121.1° |
O4' | C4' | C3' | C2' | 16.4° | 2.0° |
O4' | C4' | C5' | O5' | 64.0° | 67.1° |
C4' | O4' | C1' | C2' | 31.7° | 40.1° |
C4' | O4' | C1' | N1 | 153.4° | 158.6° |
C4' | O4' | C1' | H14 | 85.8° | 78.5° |
O4' | C4' | C3' | H16 | 132.7° | 116.7° |
O4' | C4' | C5' | H22 | 55.4° | 172.8° |
O4' | C4' | C5' | H23 | 176.5° | 52.9° |
C5' | C4' | C3' | C2' | 105.3° | 121.4° |
C5' | C4' | O4' | C1' | 134.0° | 145.9° |
C4' | C5' | O5' | H22 | 119.5° | 120.0° |
C4' | C5' | O5' | H23 | 119.5° | 120.0° |
C4' | C5' | O5' | S | 169.4° | 180.0° |
C5' | C4' | C3' | H16 | 11.0° | 2.7° |
C4' | C5' | H22 | H23 | 121.6° | 120.0° |
C3' | C2' | C1' | O4' | 40.5° | 37.1° |
C3' | C2' | C1' | O2' | 121.0° | 118.2° |
C3' | C2' | C1' | H15 | 116.2° | 118.2° |
C3' | C2' | C1' | N1 | 159.6° | 155.6° |
C3' | C2' | O2' | H15 | 126.7° | 123.7° |
C3' | C2' | C1' | H14 | 78.0° | 81.7° |
C2' | C3' | C4' | H20 | 133.6° | 117.4° |
C3' | C2' | O2' | H26 | 180.0° | 67.3° |
C2' | C3' | O3' | H27 | 65.0° | 61.4° |
CB | CA | N | C | 122.6° | 120.0° |
CB | CA | N | H4 | 120.0° | 120.0° |
CB | CA | C | H4 | 119.8° | 120.0° |
CB | CA | C | N3S | 116.7° | 80.0° |
CB | CA | C | O | 65.5° | 100.0° |
CB | CA | N | H1 | 180.0° | 176.1° |
CB | CA | N | H2 | 60.0° | 60.0° |
CA | CB | H5 | H6 | 118.1° | 120.0° |
CA | CB | CG | H7 | 54.5° | 54.1° |
O2 | C2 | N1 | C1' | 8.5° | 0.3° |
O2 | C2 | N1 | N3 | 177.2° | 179.7° |
O2 | C2 | N1 | C6 | 174.5° | 179.8° |
O2 | C2 | N3 | C3U | 5.1° | 0.3° |
O2 | C2 | N3 | C4 | 175.6° | 179.7° |
O4' | C1' | C2' | N1 | 119.1° | 118.5° |
O4' | C1' | C2' | H14 | 118.5° | 118.7° |
O4' | C1' | N1 | H14 | 121.3° | 123.1° |
O4' | C1' | C2' | O2' | 161.5° | 155.3° |
O4' | C1' | N1 | C2 | 130.3° | 130.9° |
O4' | C1' | N1 | C6 | 52.6° | 49.0° |
O4' | C1' | C2' | H15 | 75.7° | 81.1° |
C1' | O4' | C4' | H20 | 107.2° | 92.9° |
C5' | O5' | S | N3S | 57.6° | 75.0° |
C5' | O5' | S | O2S | 53.8° | 171.5° |
C5' | O5' | S | O1S | 177.3° | 38.5° |
O5' | C5' | C4' | H20 | 176.7° | 53.9° |
O5' | C5' | H22 | H23 | 121.6° | 120.0° |
C2' | C1' | N1 | H14 | 122.0° | 122.9° |
C1' | C2' | O2' | H15 | 121.8° | 123.7° |
C2' | C1' | N1 | C2 | 113.0° | 115.0° |
C2' | C1' | N1 | C6 | 64.1° | 65.1° |
C1' | C2' | C3' | H16 | 149.9° | 139.6° |
C1' | C2' | O2' | H26 | 68.6° | 180.0° |
N1 | C1' | C2' | O2' | 79.4° | 86.2° |
C1' | N1 | C2 | C6 | 177.0° | 179.9° |
C1' | N1 | C2 | N3 | 174.3° | 180.0° |
C1' | N1 | C6 | C5 | 175.4° | 180.0° |
N1 | C1' | C2' | H15 | 43.3° | 37.4° |
C1' | N1 | C6 | H24 | 4.6° | 0.1° |
O2' | C2' | C1' | H14 | 43.0° | 36.6° |
O2' | C2' | C3' | H16 | 94.1° | 102.2° |
N1 | C2 | N3 | C3U | 177.6° | 180.0° |
N1 | C2 | N3 | C4 | 1.7° | 0.0° |
C2 | N1 | C6 | C5 | 1.5° | 0.1° |
C2 | N1 | C1' | H14 | 9.0° | 7.8° |
C2 | N1 | C6 | H24 | 178.5° | 180.0° |
N3 | C2 | N1 | C6 | 2.7° | 0.1° |
C2 | N3 | C3U | C4 | 179.3° | 180.0° |
C2 | N3 | C4 | C5 | 0.6° | 0.1° |
C2 | N3 | C4 | O4 | 176.8° | 180.0° |
C2 | N3 | C3U | H17 | 180.0° | 90.0° |
C2 | N3 | C3U | H18 | 60.0° | 150.0° |
C2 | N3 | C3U | H19 | 60.0° | 30.0° |
N | CA | C | H4 | 118.0° | 120.0° |
N | CA | C | N3S | 5.5° | 160.0° |
N | CA | C | O | 172.4° | 20.0° |
CA | N | H1 | H2 | 120.0° | 123.9° |
N | CA | CB | H5 | 165.0° | 56.7° |
N | CA | CB | H6 | 46.2° | 176.7° |
CA | C | N3S | O | 178.0° | 180.0° |
CA | C | N3S | S | 176.5° | 180.0° |
C | CA | N | H1 | 57.4° | 63.9° |
C | CA | N | H2 | 62.6° | 60.0° |
C | CA | CB | H5 | 45.2° | 63.3° |
C | CA | CB | H6 | 73.6° | 56.7° |
CA | C | N3S | H25 | 3.5° | 0.0° |
N1 | C6 | C5 | H24 | 180.0° | 179.9° |
N1 | C6 | C5 | C4 | 1.0° | 0.0° |
C6 | N1 | C1' | H14 | 173.9° | 172.1° |
N1 | C6 | C5 | H21 | 179.0° | 179.9° |
O5' | S | N3S | C | 60.9° | 65.0° |
O5' | S | N3S | O2S | 116.0° | 113.6° |
O5' | S | N3S | O1S | 110.8° | 113.5° |
O5' | S | O2S | O1S | 115.9° | 123.0° |
S | O5' | C5' | H22 | 71.1° | 60.0° |
S | O5' | C5' | H23 | 50.0° | 60.0° |
O5' | S | N3S | H25 | 119.1° | 115.0° |
C3U | N3 | C4 | C5 | 179.8° | 179.9° |
C3U | N3 | C4 | O4 | 2.4° | 0.0° |
N3 | C3U | H17 | H18 | 120.0° | 120.0° |
N3 | C3U | H17 | H19 | 120.0° | 120.0° |
N3 | C3U | H18 | H19 | 120.0° | 120.0° |
C | N3S | S | H25 | 180.0° | 180.0° |
C | N3S | S | O2S | 176.9° | 48.6° |
C | N3S | S | O1S | 49.9° | 178.5° |
N3S | C | CA | H4 | 123.5° | 40.1° |
O | C | N3S | S | 5.5° | 0.0° |
O | C | CA | H4 | 54.4° | 140.0° |
O | C | N3S | H25 | 174.5° | 180.0° |
N3 | C4 | C5 | C6 | 1.9° | 0.1° |
N3 | C4 | C5 | O4 | 177.2° | 179.9° |
C4 | N3 | C3U | H17 | 0.7° | 90.0° |
C4 | N3 | C3U | H18 | 119.4° | 30.0° |
C4 | N3 | C3U | H19 | 120.7° | 150.0° |
N3 | C4 | C5 | H21 | 178.1° | 180.0° |
N3S | S | O2S | O1S | 128.3° | 122.9° |
C6 | C5 | C4 | H21 | 180.0° | 179.9° |
C6 | C5 | C4 | O4 | 175.3° | 180.0° |
O2S | S | N3S | H25 | 3.1° | 131.4° |
O1S | S | N3S | H25 | 130.1° | 1.5° |
C4 | C5 | C6 | H24 | 179.0° | 179.9° |
O4 | C4 | C5 | H21 | 4.7° | 0.1° |
H1 | N | CA | H4 | 60.0° | 56.0° |
H2 | N | CA | H4 | 180.0° | 179.9° |
H4 | CA | CB | H5 | 74.6° | 176.7° |
H4 | CA | CB | H6 | 166.6° | 63.3° |
H5 | CB | CG | H7 | 175.1° | 65.8° |
H6 | CB | CG | H7 | 66.1° | 174.2° |
H7 | CG | CD1 | H8 | 60.4° | 57.4° |
H7 | CG | CD1 | H9 | 59.6° | 177.5° |
H7 | CG | CD1 | H10 | 179.6° | 62.6° |
H7 | CG | CD2 | H11 | 60.9° | 60.1° |
H7 | CG | CD2 | H12 | 59.2° | 60.0° |
H7 | CG | CD2 | H13 | 179.2° | 180.0° |
H8 | CD1 | H9 | H10 | 120.0° | 120.0° |
H11 | CD2 | H12 | H13 | 120.0° | 120.0° |
H14 | C1' | C2' | H15 | 165.8° | 160.2° |
H15 | C2' | C3' | H16 | 33.5° | 21.4° |
H15 | C2' | O2' | H26 | 53.3° | 56.4° |
H16 | C3' | C4' | H20 | 110.1° | 123.9° |
H16 | C3' | O3' | H27 | 59.1° | 61.2° |
H17 | C3U | H18 | H19 | 120.0° | 120.0° |
H20 | C4' | C5' | H22 | 63.9° | 66.1° |
H20 | C4' | C5' | H23 | 57.2° | 173.9° |
H21 | C5 | C6 | H24 | 1.0° | 0.0° |