L2B
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O4 | C4 | doub | 1.22Å | 1.25Å | |
C4 | N3 | sing | 1.35Å | 1.34Å | |
C4 | C5 | sing | 1.41Å | 1.39Å | |
N3 | C2 | sing | 1.35Å | 1.34Å | |
C5 | C6 | doub | 1.35Å | 1.39Å | |
C2 | O2 | doub | 1.22Å | 1.25Å | |
C2 | N1 | sing | 1.34Å | 1.41Å | |
C6 | N1 | sing | 1.37Å | 1.34Å | |
N1 | C1' | sing | 1.47Å | 1.47Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C3' | sing | 1.54Å | 1.52Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C3' | C4' | sing | 1.54Å | 1.52Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
O4' | C4' | sing | 1.44Å | 1.43Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
OP2 | P | doub | 1.48Å | 1.51Å | |
O5' | P | sing | 1.61Å | 1.61Å | |
P | OP1 | sing | 1.61Å | 1.51Å | |
P | O1 | sing | 1.61Å | 1.56Å | |
C1' | H1 | sing | 1.09Å | 1.10Å | |
C2' | H2 | sing | 1.09Å | 1.10Å | |
C3' | H3 | sing | 1.09Å | 1.10Å | |
C3' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C5 | H6 | sing | 1.08Å | 1.08Å | |
C5' | H7 | sing | 1.09Å | 1.10Å | |
C5' | H8 | sing | 1.09Å | 1.10Å | |
C6 | H9 | sing | 1.08Å | 1.08Å | |
N3 | H10 | sing | 0.97Å | 1.00Å | |
O2' | H11 | sing | 0.97Å | 0.95Å | |
OP1 | H12 | sing | 0.97Å | 0.95Å | |
O1 | H13 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O4 | C4 | N3 | 119.8° | 120.3° |
O4 | C4 | C5 | 120.3° | 120.3° |
N3 | C4 | C5 | 119.8° | 119.4° |
C4 | N3 | C2 | 120.9° | 120.2° |
C4 | N3 | H10 | 119.6° | 119.9° |
C4 | C5 | C6 | 119.9° | 119.1° |
C4 | C5 | H6 | 120.0° | 120.5° |
N3 | C2 | O2 | 119.5° | 119.5° |
N3 | C2 | N1 | 120.6° | 121.0° |
C2 | N3 | H10 | 119.6° | 119.9° |
C5 | C6 | N1 | 119.7° | 119.7° |
C6 | C5 | H6 | 120.1° | 120.4° |
C5 | C6 | H9 | 120.2° | 120.1° |
O2 | C2 | N1 | 120.0° | 119.5° |
C2 | N1 | C6 | 119.2° | 120.6° |
C2 | N1 | C1' | 120.5° | 119.7° |
C6 | N1 | C1' | 120.3° | 119.7° |
N1 | C6 | H9 | 120.1° | 120.2° |
N1 | C1' | C2' | 113.2° | 110.5° |
N1 | C1' | O4' | 109.9° | 110.4° |
N1 | C1' | H1 | 109.1° | 110.3° |
O2' | C2' | C3' | 109.2° | 110.5° |
O2' | C2' | C1' | 110.1° | 110.5° |
O2' | C2' | H2 | 111.3° | 110.4° |
C2' | O2' | H11 | 109.5° | 114.0° |
C3' | C2' | C1' | 106.1° | 104.1° |
C2' | C3' | C4' | 104.7° | 104.1° |
C3' | C2' | H2 | 110.0° | 110.6° |
C2' | C3' | H3 | 110.6° | 110.5° |
C2' | C3' | H4 | 110.7° | 110.6° |
C2' | C1' | O4' | 106.4° | 104.8° |
C2' | C1' | H1 | 108.4° | 110.4° |
C1' | C2' | H2 | 109.9° | 110.5° |
C3' | C4' | O4' | 106.3° | 104.8° |
C3' | C4' | C5' | 111.3° | 110.4° |
C4' | C3' | H3 | 110.7° | 110.5° |
C4' | C3' | H4 | 110.7° | 110.5° |
C3' | C4' | H5 | 109.2° | 110.3° |
C1' | O4' | C4' | 109.7° | 105.3° |
O4' | C1' | H1 | 109.7° | 110.4° |
O4' | C4' | C5' | 110.4° | 110.4° |
O4' | C4' | H5 | 110.4° | 110.5° |
C4' | C5' | O5' | 109.5° | 109.5° |
C5' | C4' | H5 | 109.1° | 110.3° |
C4' | C5' | H7 | 109.5° | 109.5° |
C4' | C5' | H8 | 109.4° | 109.4° |
C5' | O5' | P | 121.4° | 123.0° |
O5' | C5' | H7 | 109.5° | 109.5° |
O5' | C5' | H8 | 109.5° | 109.4° |
OP2 | P | O5' | 108.3° | 109.5° |
OP2 | P | OP1 | 109.4° | 109.5° |
OP2 | P | O1 | 152.8° | 109.5° |
O5' | P | OP1 | 108.1° | 109.4° |
O5' | P | O1 | 93.6° | 109.5° |
OP1 | P | O1 | 77.4° | 109.4° |
P | OP1 | H12 | 109.5° | 114.0° |
P | O1 | H13 | 109.5° | 114.0° |
H3 | C3' | H4 | 109.5° | 110.5° |
H7 | C5' | H8 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O4 | C4 | N3 | C5 | 179.8° | 179.9° |
O4 | C4 | N3 | C2 | 180.0° | 179.9° |
O4 | C4 | C5 | C6 | 179.9° | 179.8° |
O4 | C4 | C5 | H6 | 0.1° | 0.1° |
O4 | C4 | N3 | H10 | 0.0° | 0.1° |
C4 | N3 | C2 | H10 | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.1° | 0.4° |
C4 | N3 | C2 | O2 | 180.0° | 180.0° |
C4 | N3 | C2 | N1 | 0.0° | 0.3° |
N3 | C4 | C5 | H6 | 179.9° | 180.0° |
C5 | C4 | N3 | C2 | 0.2° | 0.1° |
C4 | C5 | C6 | H6 | 180.0° | 179.7° |
C4 | C5 | C6 | N1 | 0.2° | 0.3° |
C4 | C5 | C6 | H9 | 179.7° | 180.0° |
C5 | C4 | N3 | H10 | 179.8° | 180.0° |
N3 | C2 | O2 | N1 | 179.9° | 179.7° |
N3 | C2 | N1 | C6 | 0.3° | 0.3° |
N3 | C2 | N1 | C1' | 179.5° | 179.7° |
C5 | C6 | N1 | C2 | 0.4° | 0.0° |
C5 | C6 | N1 | H9 | 180.0° | 179.7° |
C5 | C6 | N1 | C1' | 179.6° | 180.0° |
O2 | C2 | N1 | C6 | 179.7° | 180.0° |
O2 | C2 | N1 | C1' | 0.5° | 0.0° |
O2 | C2 | N3 | H10 | 0.0° | 0.0° |
C2 | N1 | C6 | C1' | 179.2° | 180.0° |
C2 | N1 | C1' | C2' | 73.4° | 118.1° |
C2 | N1 | C1' | O4' | 167.8° | 126.4° |
C2 | N1 | C1' | H1 | 47.5° | 4.2° |
C2 | N1 | C6 | H9 | 179.6° | 179.7° |
N1 | C2 | N3 | H10 | 180.0° | 179.7° |
C6 | N1 | C1' | C2' | 107.4° | 61.9° |
C6 | N1 | C1' | O4' | 11.4° | 53.5° |
C6 | N1 | C1' | H1 | 131.7° | 175.8° |
N1 | C6 | C5 | H6 | 179.8° | 180.0° |
N1 | C1' | C2' | O2' | 112.6° | 98.5° |
N1 | C1' | C2' | C3' | 129.3° | 142.9° |
N1 | C1' | C2' | O4' | 120.8° | 118.9° |
N1 | C1' | C2' | H1 | 121.2° | 122.3° |
N1 | C1' | O4' | H1 | 120.0° | 122.2° |
N1 | C1' | O4' | C4' | 145.6° | 159.4° |
N1 | C1' | C2' | H2 | 10.4° | 24.1° |
C1' | N1 | C6 | H9 | 0.4° | 0.3° |
O2' | C2' | C3' | C1' | 118.7° | 118.7° |
O2' | C2' | C3' | H2 | 122.5° | 122.7° |
O2' | C2' | C1' | H2 | 123.0° | 122.5° |
O2' | C2' | C3' | C4' | 111.2° | 118.7° |
O2' | C2' | C1' | O4' | 126.6° | 142.7° |
O2' | C2' | C1' | H1 | 8.6° | 23.8° |
O2' | C2' | C3' | H3 | 8.0° | 0.0° |
O2' | C2' | C3' | H4 | 129.6° | 122.7° |
C3' | C2' | C1' | H2 | 118.9° | 118.8° |
C2' | C3' | C4' | H3 | 119.2° | 118.7° |
C2' | C3' | C4' | H4 | 119.2° | 118.7° |
C3' | C2' | C1' | O4' | 8.5° | 24.0° |
C2' | C3' | C4' | O4' | 20.9° | 23.9° |
C2' | C3' | C4' | C5' | 141.2° | 142.8° |
C3' | C2' | C1' | H1 | 109.5° | 94.9° |
C2' | C3' | H3 | H4 | 122.2° | 122.7° |
C2' | C3' | C4' | H5 | 98.3° | 95.0° |
C3' | C2' | O2' | H11 | 180.0° | 61.4° |
C1' | C2' | C3' | C4' | 7.5° | 0.0° |
C2' | C1' | O4' | H1 | 117.1° | 118.9° |
C2' | C1' | O4' | C4' | 22.6° | 40.5° |
C1' | C2' | C3' | H3 | 126.7° | 118.7° |
C1' | C2' | C3' | H4 | 111.8° | 118.7° |
C1' | C2' | O2' | H11 | 63.9° | 176.1° |
C3' | C4' | O4' | C1' | 27.6° | 40.5° |
C3' | C4' | O4' | C5' | 120.9° | 118.9° |
C3' | C4' | O4' | H5 | 118.3° | 118.8° |
C3' | C4' | C5' | H5 | 120.6° | 122.2° |
C3' | C4' | C5' | O5' | 171.0° | 175.0° |
C4' | C3' | C2' | H2 | 126.3° | 118.7° |
C4' | C3' | H3 | H4 | 122.2° | 122.6° |
C3' | C4' | C5' | H7 | 51.0° | 55.0° |
C3' | C4' | C5' | H8 | 69.0° | 65.1° |
C1' | O4' | C4' | C5' | 148.5° | 159.3° |
O4' | C1' | C2' | H2 | 110.4° | 94.8° |
C1' | O4' | C4' | H5 | 90.7° | 78.3° |
O4' | C4' | C5' | H5 | 121.6° | 122.4° |
O4' | C4' | C5' | O5' | 71.1° | 69.6° |
C4' | O4' | C1' | H1 | 94.5° | 78.4° |
O4' | C4' | C3' | H3 | 140.1° | 142.6° |
O4' | C4' | C3' | H4 | 98.4° | 94.7° |
O4' | C4' | C5' | H7 | 168.9° | 170.4° |
O4' | C4' | C5' | H8 | 48.9° | 50.3° |
C4' | C5' | O5' | H7 | 120.0° | 120.0° |
C4' | C5' | O5' | H8 | 120.0° | 119.9° |
C4' | C5' | O5' | P | 123.2° | 179.9° |
C5' | C4' | C3' | H3 | 99.5° | 98.5° |
C5' | C4' | C3' | H4 | 22.0° | 24.2° |
C4' | C5' | H7 | H8 | 120.0° | 120.0° |
C5' | O5' | P | OP2 | 60.6° | 55.0° |
C5' | O5' | P | OP1 | 179.1° | 65.0° |
C5' | O5' | P | O1 | 103.0° | 175.0° |
O5' | C5' | C4' | H5 | 50.4° | 52.8° |
O5' | C5' | H7 | H8 | 120.0° | 120.0° |
OP2 | P | O5' | OP1 | 118.4° | 120.0° |
OP2 | P | O5' | O1 | 163.6° | 120.0° |
OP2 | P | OP1 | O1 | 152.6° | 120.0° |
OP2 | P | OP1 | H12 | 0.0° | 179.9° |
OP2 | P | O1 | H13 | 0.0° | 60.0° |
O5' | P | OP1 | O1 | 89.7° | 120.0° |
P | O5' | C5' | H7 | 116.8° | 60.0° |
P | O5' | C5' | H8 | 3.2° | 60.0° |
O5' | P | OP1 | H12 | 117.7° | 60.0° |
O5' | P | O1 | H13 | 144.2° | 180.0° |
OP1 | P | O1 | H13 | 108.1° | 60.0° |
O1 | P | OP1 | H12 | 152.5° | 60.0° |
H1 | C1' | C2' | H2 | 131.6° | 146.3° |
H2 | C2' | C3' | H3 | 114.4° | 122.7° |
H2 | C2' | C3' | H4 | 7.1° | 0.0° |
H2 | C2' | O2' | H11 | 58.3° | 61.3° |
H3 | C3' | C4' | H5 | 21.0° | 23.7° |
H4 | C3' | C4' | H5 | 142.5° | 146.3° |
H5 | C4' | C5' | H7 | 69.5° | 67.2° |
H5 | C4' | C5' | H8 | 170.5° | 172.7° |
H6 | C5 | C6 | H9 | 0.3° | 0.3° |