L2B

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C4	doub	1.22Å	1.25Å
C4	N3	sing	1.35Å	1.34Å
C4	C5	sing	1.41Å	1.39Å
N3	C2	sing	1.35Å	1.34Å
C5	C6	doub	1.35Å	1.39Å
C2	O2	doub	1.22Å	1.25Å
C2	N1	sing	1.34Å	1.41Å
C6	N1	sing	1.37Å	1.34Å
N1	C1'	sing	1.47Å	1.47Å
C2'	O2'	sing	1.43Å	1.43Å
C2'	C3'	sing	1.54Å	1.52Å
C2'	C1'	sing	1.54Å	1.53Å
C3'	C4'	sing	1.54Å	1.52Å
C1'	O4'	sing	1.44Å	1.43Å
O4'	C4'	sing	1.44Å	1.43Å
C4'	C5'	sing	1.53Å	1.52Å
C5'	O5'	sing	1.43Å	1.43Å
OP2	P	doub	1.48Å	1.51Å
O5'	P	sing	1.61Å	1.61Å
P	OP1	sing	1.61Å	1.51Å
P	O1	sing	1.61Å	1.56Å
C1'	H1	sing	1.09Å	1.10Å
C2'	H2	sing	1.09Å	1.10Å
C3'	H3	sing	1.09Å	1.10Å
C3'	H4	sing	1.09Å	1.10Å
C4'	H5	sing	1.09Å	1.10Å
C5	H6	sing	1.08Å	1.08Å
C5'	H7	sing	1.09Å	1.10Å
C5'	H8	sing	1.09Å	1.10Å
C6	H9	sing	1.08Å	1.08Å
N3	H10	sing	0.97Å	1.00Å
O2'	H11	sing	0.97Å	0.95Å
OP1	H12	sing	0.97Å	0.95Å
O1	H13	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	C4	N3	119.8°	120.3°
O4	C4	C5	120.3°	120.3°
N3	C4	C5	119.8°	119.4°
C4	N3	C2	120.9°	120.2°
C4	N3	H10	119.6°	119.9°
C4	C5	C6	119.9°	119.1°
C4	C5	H6	120.0°	120.5°
N3	C2	O2	119.5°	119.5°
N3	C2	N1	120.6°	121.0°
C2	N3	H10	119.6°	119.9°
C5	C6	N1	119.7°	119.7°
C6	C5	H6	120.1°	120.4°
C5	C6	H9	120.2°	120.1°
O2	C2	N1	120.0°	119.5°
C2	N1	C6	119.2°	120.6°
C2	N1	C1'	120.5°	119.7°
C6	N1	C1'	120.3°	119.7°
N1	C6	H9	120.1°	120.2°
N1	C1'	C2'	113.2°	110.5°
N1	C1'	O4'	109.9°	110.4°
N1	C1'	H1	109.1°	110.3°
O2'	C2'	C3'	109.2°	110.5°
O2'	C2'	C1'	110.1°	110.5°
O2'	C2'	H2	111.3°	110.4°
C2'	O2'	H11	109.5°	114.0°
C3'	C2'	C1'	106.1°	104.1°
C2'	C3'	C4'	104.7°	104.1°
C3'	C2'	H2	110.0°	110.6°
C2'	C3'	H3	110.6°	110.5°
C2'	C3'	H4	110.7°	110.6°
C2'	C1'	O4'	106.4°	104.8°
C2'	C1'	H1	108.4°	110.4°
C1'	C2'	H2	109.9°	110.5°
C3'	C4'	O4'	106.3°	104.8°
C3'	C4'	C5'	111.3°	110.4°
C4'	C3'	H3	110.7°	110.5°
C4'	C3'	H4	110.7°	110.5°
C3'	C4'	H5	109.2°	110.3°
C1'	O4'	C4'	109.7°	105.3°
O4'	C1'	H1	109.7°	110.4°
O4'	C4'	C5'	110.4°	110.4°
O4'	C4'	H5	110.4°	110.5°
C4'	C5'	O5'	109.5°	109.5°
C5'	C4'	H5	109.1°	110.3°
C4'	C5'	H7	109.5°	109.5°
C4'	C5'	H8	109.4°	109.4°
C5'	O5'	P	121.4°	123.0°
O5'	C5'	H7	109.5°	109.5°
O5'	C5'	H8	109.5°	109.4°
OP2	P	O5'	108.3°	109.5°
OP2	P	OP1	109.4°	109.5°
OP2	P	O1	152.8°	109.5°
O5'	P	OP1	108.1°	109.4°
O5'	P	O1	93.6°	109.5°
OP1	P	O1	77.4°	109.4°
P	OP1	H12	109.5°	114.0°
P	O1	H13	109.5°	114.0°
H3	C3'	H4	109.5°	110.5°
H7	C5'	H8	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C4	N3	C5	179.8°	179.9°
O4	C4	N3	C2	180.0°	179.9°
O4	C4	C5	C6	179.9°	179.8°
O4	C4	C5	H6	0.1°	0.1°
O4	C4	N3	H10	0.0°	0.1°
C4	N3	C2	H10	180.0°	180.0°
N3	C4	C5	C6	0.1°	0.4°
C4	N3	C2	O2	180.0°	180.0°
C4	N3	C2	N1	0.0°	0.3°
N3	C4	C5	H6	179.9°	180.0°
C5	C4	N3	C2	0.2°	0.1°
C4	C5	C6	H6	180.0°	179.7°
C4	C5	C6	N1	0.2°	0.3°
C4	C5	C6	H9	179.7°	180.0°
C5	C4	N3	H10	179.8°	180.0°
N3	C2	O2	N1	179.9°	179.7°
N3	C2	N1	C6	0.3°	0.3°
N3	C2	N1	C1'	179.5°	179.7°
C5	C6	N1	C2	0.4°	0.0°
C5	C6	N1	H9	180.0°	179.7°
C5	C6	N1	C1'	179.6°	180.0°
O2	C2	N1	C6	179.7°	180.0°
O2	C2	N1	C1'	0.5°	0.0°
O2	C2	N3	H10	0.0°	0.0°
C2	N1	C6	C1'	179.2°	180.0°
C2	N1	C1'	C2'	73.4°	118.1°
C2	N1	C1'	O4'	167.8°	126.4°
C2	N1	C1'	H1	47.5°	4.2°
C2	N1	C6	H9	179.6°	179.7°
N1	C2	N3	H10	180.0°	179.7°
C6	N1	C1'	C2'	107.4°	61.9°
C6	N1	C1'	O4'	11.4°	53.5°
C6	N1	C1'	H1	131.7°	175.8°
N1	C6	C5	H6	179.8°	180.0°
N1	C1'	C2'	O2'	112.6°	98.5°
N1	C1'	C2'	C3'	129.3°	142.9°
N1	C1'	C2'	O4'	120.8°	118.9°
N1	C1'	C2'	H1	121.2°	122.3°
N1	C1'	O4'	H1	120.0°	122.2°
N1	C1'	O4'	C4'	145.6°	159.4°
N1	C1'	C2'	H2	10.4°	24.1°
C1'	N1	C6	H9	0.4°	0.3°
O2'	C2'	C3'	C1'	118.7°	118.7°
O2'	C2'	C3'	H2	122.5°	122.7°
O2'	C2'	C1'	H2	123.0°	122.5°
O2'	C2'	C3'	C4'	111.2°	118.7°
O2'	C2'	C1'	O4'	126.6°	142.7°
O2'	C2'	C1'	H1	8.6°	23.8°
O2'	C2'	C3'	H3	8.0°	0.0°
O2'	C2'	C3'	H4	129.6°	122.7°
C3'	C2'	C1'	H2	118.9°	118.8°
C2'	C3'	C4'	H3	119.2°	118.7°
C2'	C3'	C4'	H4	119.2°	118.7°
C3'	C2'	C1'	O4'	8.5°	24.0°
C2'	C3'	C4'	O4'	20.9°	23.9°
C2'	C3'	C4'	C5'	141.2°	142.8°
C3'	C2'	C1'	H1	109.5°	94.9°
C2'	C3'	H3	H4	122.2°	122.7°
C2'	C3'	C4'	H5	98.3°	95.0°
C3'	C2'	O2'	H11	180.0°	61.4°
C1'	C2'	C3'	C4'	7.5°	0.0°
C2'	C1'	O4'	H1	117.1°	118.9°
C2'	C1'	O4'	C4'	22.6°	40.5°
C1'	C2'	C3'	H3	126.7°	118.7°
C1'	C2'	C3'	H4	111.8°	118.7°
C1'	C2'	O2'	H11	63.9°	176.1°
C3'	C4'	O4'	C1'	27.6°	40.5°
C3'	C4'	O4'	C5'	120.9°	118.9°
C3'	C4'	O4'	H5	118.3°	118.8°
C3'	C4'	C5'	H5	120.6°	122.2°
C3'	C4'	C5'	O5'	171.0°	175.0°
C4'	C3'	C2'	H2	126.3°	118.7°
C4'	C3'	H3	H4	122.2°	122.6°
C3'	C4'	C5'	H7	51.0°	55.0°
C3'	C4'	C5'	H8	69.0°	65.1°
C1'	O4'	C4'	C5'	148.5°	159.3°
O4'	C1'	C2'	H2	110.4°	94.8°
C1'	O4'	C4'	H5	90.7°	78.3°
O4'	C4'	C5'	H5	121.6°	122.4°
O4'	C4'	C5'	O5'	71.1°	69.6°
C4'	O4'	C1'	H1	94.5°	78.4°
O4'	C4'	C3'	H3	140.1°	142.6°
O4'	C4'	C3'	H4	98.4°	94.7°
O4'	C4'	C5'	H7	168.9°	170.4°
O4'	C4'	C5'	H8	48.9°	50.3°
C4'	C5'	O5'	H7	120.0°	120.0°
C4'	C5'	O5'	H8	120.0°	119.9°
C4'	C5'	O5'	P	123.2°	179.9°
C5'	C4'	C3'	H3	99.5°	98.5°
C5'	C4'	C3'	H4	22.0°	24.2°
C4'	C5'	H7	H8	120.0°	120.0°
C5'	O5'	P	OP2	60.6°	55.0°
C5'	O5'	P	OP1	179.1°	65.0°
C5'	O5'	P	O1	103.0°	175.0°
O5'	C5'	C4'	H5	50.4°	52.8°
O5'	C5'	H7	H8	120.0°	120.0°
OP2	P	O5'	OP1	118.4°	120.0°
OP2	P	O5'	O1	163.6°	120.0°
OP2	P	OP1	O1	152.6°	120.0°
OP2	P	OP1	H12	0.0°	179.9°
OP2	P	O1	H13	0.0°	60.0°
O5'	P	OP1	O1	89.7°	120.0°
P	O5'	C5'	H7	116.8°	60.0°
P	O5'	C5'	H8	3.2°	60.0°
O5'	P	OP1	H12	117.7°	60.0°
O5'	P	O1	H13	144.2°	180.0°
OP1	P	O1	H13	108.1°	60.0°
O1	P	OP1	H12	152.5°	60.0°
H1	C1'	C2'	H2	131.6°	146.3°
H2	C2'	C3'	H3	114.4°	122.7°
H2	C2'	C3'	H4	7.1°	0.0°
H2	C2'	O2'	H11	58.3°	61.3°
H3	C3'	C4'	H5	21.0°	23.7°
H4	C3'	C4'	H5	142.5°	146.3°
H5	C4'	C5'	H7	69.5°	67.2°
H5	C4'	C5'	H8	170.5°	172.7°
H6	C5	C6	H9	0.3°	0.3°

Release date:	2020-11-18
Definition date:	2019-07-16
Last modified:	2020-11-13
Release status:	REL
Processing site:	PDBE
Derived from:	6SA1