L1J

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.43Å
C3'	C4'	sing	1.55Å	1.54Å
C3'	C2'	sing	1.55Å	1.53Å
C4'	C5'	sing	1.53Å	1.54Å
C4'	O4'	sing	1.44Å	1.42Å
C2'	C1'	sing	1.54Å	1.53Å
C5'	O5'	sing	1.43Å	1.42Å
C1'	O4'	sing	1.44Å	1.42Å
C1'	N9	sing	1.46Å	1.48Å
N9	C8	sing	1.37Å	1.37Å	Aromatic
N9	C4	sing	1.37Å	1.38Å	Aromatic
C8	N7	doub	1.30Å	1.31Å	Aromatic
C4	N3	sing	1.34Å	1.37Å
C4	C5	doub	1.40Å	1.38Å	Aromatic
N3	C2	doub	1.31Å	1.33Å
N7	C5	sing	1.36Å	1.40Å	Aromatic
C5	C6	sing	1.41Å	1.44Å
C2	N2	sing	1.37Å	1.30Å
C2	N1	sing	1.36Å	1.36Å
C6	N1	sing	1.35Å	1.38Å
C6	O6	doub	1.22Å	1.23Å
O5'	HO5'	sing	0.97Å	0.95Å
C5'	H5'2	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
N1	HN1	sing	0.97Å	1.00Å
N2	HN22	sing	0.97Å	1.00Å
N2	HN21	sing	0.97Å	1.00Å
C2'	H2'2	sing	1.09Å	1.10Å
C2'	H2'1	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	H1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C4'	109.6°	110.9°
O3'	C3'	C2'	113.1°	110.9°
O3'	C3'	H3'	111.8°	110.8°
C3'	O3'	H1	109.5°	114.0°
C4'	C3'	C2'	101.5°	102.1°
C3'	C4'	C5'	114.2°	110.6°
C3'	C4'	O4'	107.9°	103.5°
C3'	C4'	H4'	108.2°	110.8°
C4'	C3'	H3'	110.1°	111.0°
C3'	C2'	C1'	100.6°	104.2°
C3'	C2'	H2'2	111.7°	110.5°
C3'	C2'	H2'1	111.6°	110.6°
C2'	C3'	H3'	110.3°	110.9°
C5'	C4'	O4'	108.5°	110.6°
C4'	C5'	O5'	113.7°	109.5°
C4'	C5'	H5'2	108.4°	109.5°
C4'	C5'	H5'1	108.4°	109.5°
C5'	C4'	H4'	108.2°	110.5°
C4'	O4'	C1'	108.3°	107.0°
O4'	C4'	H4'	109.8°	110.6°
C2'	C1'	O4'	106.0°	107.3°
C2'	C1'	N9	113.3°	109.9°
C2'	C1'	H1'	107.9°	110.0°
C1'	C2'	H2'2	111.7°	110.5°
C1'	C2'	H2'1	111.6°	110.5°
C5'	O5'	HO5'	109.5°	114.0°
O5'	C5'	H5'2	108.4°	109.5°
O5'	C5'	H5'1	108.4°	109.4°
O4'	C1'	N9	111.5°	109.8°
O4'	C1'	H1'	109.4°	109.9°
C1'	N9	C8	127.5°	126.3°
C1'	N9	C4	126.9°	126.3°
N9	C1'	H1'	108.6°	109.9°
C8	N9	C4	105.6°	107.5°
N9	C8	N7	114.3°	109.8°
N9	C8	H8	122.9°	125.1°
N9	C4	N3	127.7°	134.2°
N9	C4	C5	105.7°	106.1°
C8	N7	C5	103.3°	109.3°
N7	C8	H8	122.8°	125.1°
N3	C4	C5	126.7°	119.7°
C4	N3	C2	113.1°	121.1°
C4	C5	N7	111.0°	107.3°
C4	C5	C6	118.0°	118.6°
N3	C2	N2	116.3°	119.0°
N3	C2	N1	124.9°	121.9°
N7	C5	C6	131.0°	134.1°
C5	C6	N1	114.1°	118.3°
C5	C6	O6	127.9°	120.8°
N2	C2	N1	118.8°	119.0°
C2	N2	HN22	120.0°	120.0°
C2	N2	HN21	120.0°	120.0°
C2	N1	C6	123.2°	120.3°
C2	N1	HN1	118.4°	119.9°
N1	C6	O6	118.1°	120.9°
C6	N1	HN1	118.4°	119.8°
H5'2	C5'	H5'1	109.5°	109.5°
HN22	N2	HN21	120.0°	120.0°
H2'2	C2'	H2'1	109.5°	110.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C4'	C2'	119.8°	118.1°
O3'	C3'	C4'	H3'	123.3°	123.7°
O3'	C3'	C2'	H3'	126.0°	123.6°
O3'	C3'	C4'	C5'	141.0°	86.3°
O3'	C3'	C4'	O4'	98.2°	155.2°
O3'	C3'	C2'	C1'	82.0°	139.1°
O3'	C3'	C4'	H4'	20.5°	36.6°
O3'	C3'	C2'	H2'2	159.4°	20.4°
O3'	C3'	C2'	H2'1	36.5°	102.2°
C4'	C3'	C2'	H3'	116.7°	118.2°
C3'	C4'	C5'	O4'	120.4°	114.1°
C3'	C4'	C5'	H4'	120.5°	123.1°
C3'	C4'	O4'	H4'	117.7°	118.7°
C4'	C3'	C2'	C1'	35.2°	20.9°
C3'	C4'	C5'	O5'	57.5°	179.5°
C3'	C4'	O4'	C1'	2.7°	40.1°
C3'	C4'	C5'	H5'2	178.1°	60.5°
C3'	C4'	C5'	H5'1	63.1°	59.5°
C4'	C3'	C2'	H2'2	83.3°	97.8°
C4'	C3'	C2'	H2'1	153.8°	139.6°
C4'	C3'	O3'	H1	180.0°	180.0°
C2'	C3'	C4'	C5'	99.2°	155.5°
C2'	C3'	C4'	O4'	21.6°	37.1°
C3'	C2'	C1'	H2'2	118.6°	118.7°
C3'	C2'	C1'	H2'1	118.5°	118.8°
C3'	C2'	C1'	O4'	39.1°	2.0°
C3'	C2'	C1'	N9	161.7°	121.4°
C2'	C3'	C4'	H4'	140.3°	81.5°
C3'	C2'	C1'	H1'	78.0°	117.5°
C3'	C2'	H2'2	H2'1	124.2°	122.7°
C2'	C3'	O3'	H1	67.6°	67.3°
C5'	C4'	O4'	H4'	118.1°	122.8°
C4'	C5'	O5'	H5'2	120.6°	120.0°
C4'	C5'	O5'	H5'1	120.6°	120.0°
C5'	C4'	O4'	C1'	127.0°	158.6°
C4'	C5'	O5'	HO5'	180.0°	180.0°
C4'	C5'	H5'2	H5'1	118.1°	120.0°
C5'	C4'	C3'	H3'	17.7°	37.4°
C4'	O4'	C1'	C2'	26.5°	26.5°
O4'	C4'	C5'	O5'	62.9°	66.5°
C4'	O4'	C1'	N9	150.2°	145.9°
O4'	C4'	C5'	H5'2	57.7°	53.6°
O4'	C4'	C5'	H5'1	176.5°	173.6°
C4'	O4'	C1'	H1'	89.6°	93.1°
O4'	C4'	C3'	H3'	138.4°	81.1°
C2'	C1'	O4'	N9	123.7°	119.4°
C2'	C1'	O4'	H1'	116.1°	119.6°
C2'	C1'	N9	H1'	119.9°	121.2°
C2'	C1'	N9	C8	122.6°	94.3°
C2'	C1'	N9	C4	58.0°	85.4°
C1'	C2'	H2'2	H2'1	124.1°	122.5°
C1'	C2'	C3'	H3'	151.9°	97.3°
O5'	C5'	H5'2	H5'1	118.1°	119.9°
O5'	C5'	C4'	H4'	178.0°	56.4°
O4'	C1'	N9	H1'	120.6°	121.0°
O4'	C1'	N9	C8	117.9°	23.6°
O4'	C1'	N9	C4	61.5°	156.8°
C1'	O4'	C4'	H4'	115.0°	78.6°
O4'	C1'	C2'	H2'2	79.5°	120.7°
O4'	C1'	C2'	H2'1	157.6°	116.7°
C1'	N9	C8	C4	179.5°	179.7°
C1'	N9	C8	N7	177.0°	180.0°
C1'	N9	C4	N3	1.5°	0.0°
C1'	N9	C4	C5	176.7°	179.9°
C1'	N9	C8	H8	3.0°	0.1°
N9	C1'	C2'	H2'2	43.2°	119.9°
N9	C1'	C2'	H2'1	79.7°	2.6°
N9	C8	N7	H8	180.0°	180.0°
C8	N9	C4	N3	177.9°	179.7°
C8	N9	C4	C5	3.8°	0.4°
N9	C8	N7	C5	1.6°	0.1°
C8	N9	C1'	H1'	2.7°	144.6°
C4	N9	C8	N7	3.5°	0.2°
N9	C4	N3	C5	177.9°	179.8°
N9	C4	N3	C2	175.9°	180.0°
N9	C4	C5	N7	3.1°	0.4°
N9	C4	C5	C6	176.3°	179.8°
C4	N9	C1'	H1'	177.9°	35.8°
C4	N9	C8	H8	176.5°	179.8°
C8	N7	C5	C4	1.0°	0.3°
C8	N7	C5	C6	178.3°	180.0°
N3	C4	C5	N7	178.6°	179.7°
N3	C4	C5	C6	2.0°	0.1°
C4	N3	C2	N2	177.5°	180.0°
C4	N3	C2	N1	0.1°	0.0°
C5	C4	N3	C2	2.0°	0.1°
C4	C5	N7	C6	179.3°	179.7°
C4	C5	C6	N1	0.3°	0.4°
C4	C5	C6	O6	179.1°	179.7°
N3	C2	N2	N1	177.8°	179.9°
N3	C2	N1	C6	2.4°	0.4°
N3	C2	N1	HN1	177.6°	179.9°
N3	C2	N2	HN22	0.0°	0.0°
N3	C2	N2	HN21	180.0°	180.0°
N7	C5	C6	N1	179.0°	179.2°
N7	C5	C6	O6	0.2°	0.0°
C5	N7	C8	H8	178.4°	179.9°
C5	C6	N1	C2	2.3°	0.6°
C5	C6	N1	O6	178.9°	179.3°
C5	C6	N1	HN1	177.7°	179.8°
N2	C2	N1	C6	175.3°	179.6°
N2	C2	N1	HN1	4.7°	0.0°
C2	N2	HN22	HN21	180.0°	180.0°
C2	N1	C6	HN1	180.0°	179.7°
C2	N1	C6	O6	178.8°	179.9°
N1	C2	N2	HN22	177.8°	180.0°
N1	C2	N2	HN21	2.2°	0.0°
O6	C6	N1	HN1	1.2°	0.5°
HO5'	O5'	C5'	H5'2	59.4°	60.0°
HO5'	O5'	C5'	H5'1	59.4°	60.0°
H5'2	C5'	C4'	H4'	61.4°	176.4°
H5'1	C5'	C4'	H4'	57.4°	63.6°
H4'	C4'	C3'	H3'	102.8°	160.3°
H1'	C1'	C2'	H2'2	163.4°	1.2°
H1'	C1'	C2'	H2'1	40.5°	123.7°
H2'2	C2'	C3'	H3'	33.4°	144.0°
H2'1	C2'	C3'	H3'	89.6°	21.4°
H3'	C3'	O3'	H1	57.7°	56.3°

Release date:	2022-06-15
Definition date:	2022-06-09
Last modified:	2022-08-22
Release status:	REL
Processing site:	PDBE
Derived from:	7ZEO