English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

L03

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	S2	sing	1.81Å	1.81Å
C1	H1C1	sing	1.09Å	1.12Å
C1	H1C2	sing	1.09Å	1.12Å
C1	H1C3	sing	1.09Å	1.11Å
S2	C3	sing	1.76Å	1.76Å
C3	N4	doub	1.31Å	1.31Å	Aromatic
C3	N7	sing	1.37Å	1.36Å	Aromatic
N4	N5	sing	1.29Å	1.29Å	Aromatic
N5	C6	doub	1.31Å	1.32Å	Aromatic
C6	N7	sing	1.37Å	1.37Å	Aromatic
C6	C8	sing	1.48Å	1.47Å	Aromatic
N7	H7	sing	0.97Å	1.02Å
C8	C9	doub	1.40Å	1.40Å	Aromatic
C8	C14	sing	1.40Å	1.40Å	Aromatic
C9	C10	sing	1.38Å	1.40Å	Aromatic
C9	H9	sing	1.08Å	1.10Å
C10	C11	doub	1.38Å	1.39Å	Aromatic
C10	H10	sing	1.08Å	1.10Å
C11	CL12	sing	1.74Å	1.76Å
C11	C13	sing	1.38Å	1.39Å	Aromatic
C13	C14	doub	1.38Å	1.38Å	Aromatic
C13	H13	sing	1.08Å	1.10Å
C14	H14	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S2	C1	H1C1	102.4°	109.5°
S2	C1	H1C2	114.9°	109.4°
S2	C1	H1C3	114.9°	109.5°
C1	S2	C3	102.4°	100.0°
H1C1	C1	H1C2	114.9°	109.5°
H1C1	C1	H1C3	114.9°	109.4°
H1C2	C1	H1C3	95.6°	109.5°
S2	C3	N4	126.9°	126.4°
S2	C3	N7	125.3°	126.4°
N4	C3	N7	107.8°	107.2°
C3	N4	N5	109.7°	110.0°
C3	N7	C6	105.8°	105.7°
C3	N7	H7	127.1°	127.1°
N4	N5	C6	109.8°	110.0°
N5	C6	N7	106.8°	107.0°
N5	C6	C8	127.1°	126.5°
N7	C6	C8	125.6°	126.5°
C6	N7	H7	127.1°	127.2°
C6	C8	C9	121.5°	120.1°
C6	C8	C14	118.3°	120.2°
C9	C8	C14	119.9°	119.7°
C8	C9	C10	119.3°	119.8°
C8	C9	H9	120.3°	120.1°
C8	C14	C13	119.7°	119.9°
C8	C14	H14	120.1°	120.0°
C10	C9	H9	120.3°	120.1°
C9	C10	C11	120.6°	120.2°
C9	C10	H10	119.7°	119.9°
C11	C10	H10	119.7°	119.9°
C10	C11	CL12	121.1°	119.9°
C10	C11	C13	119.2°	120.2°
CL12	C11	C13	119.7°	119.9°
C11	C13	C14	121.2°	120.2°
C11	C13	H13	119.4°	120.0°
C14	C13	H13	119.4°	119.9°
C13	C14	H14	120.1°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S2	C1	H1C1	H1C2	125.3°	120.0°
S2	C1	H1C1	H1C3	125.3°	120.0°
S2	C1	H1C2	H1C3	120.8°	120.1°
C1	S2	C3	N4	173.8°	0.3°
C1	S2	C3	N7	5.8°	180.0°
H1C1	C1	H1C2	H1C3	120.8°	120.0°
H1C1	C1	S2	C3	180.0°	180.0°
H1C2	C1	S2	C3	54.7°	60.0°
H1C3	C1	S2	C3	54.7°	60.0°
S2	C3	N4	N7	179.6°	179.8°
S2	C3	N4	N5	179.4°	179.8°
S2	C3	N7	C6	178.7°	180.0°
S2	C3	N7	H7	1.3°	0.1°
C3	N4	N5	C6	2.2°	0.5°
N4	C3	N7	C6	1.6°	0.2°
N4	C3	N7	H7	178.4°	179.7°
N7	C3	N4	N5	0.3°	0.5°
C3	N7	C6	N5	2.9°	0.0°
C3	N7	C6	H7	180.0°	179.9°
C3	N7	C6	C8	175.1°	180.0°
N4	N5	C6	N7	3.1°	0.3°
N4	N5	C6	C8	175.2°	179.7°
N5	C6	N7	C8	172.2°	180.0°
N5	C6	N7	H7	177.1°	180.0°
N5	C6	C8	C9	14.4°	39.7°
N5	C6	C8	C14	159.3°	139.9°
N7	C6	C8	C9	175.1°	140.3°
N7	C6	C8	C14	11.3°	40.0°
C8	C6	N7	H7	5.0°	0.1°
C6	C8	C9	C14	173.5°	179.6°
C6	C8	C9	C10	175.6°	180.0°
C6	C8	C9	H9	4.4°	0.1°
C6	C8	C14	C13	175.8°	179.8°
C6	C8	C14	H14	4.2°	0.2°
C8	C9	C10	H9	180.0°	180.0°
C8	C9	C10	C11	1.0°	0.1°
C8	C9	C10	H10	179.0°	180.0°
C9	C8	C14	C13	2.1°	0.5°
C9	C8	C14	H14	178.0°	179.9°
C14	C8	C9	C10	2.1°	0.3°
C14	C8	C9	H9	177.9°	179.7°
C8	C14	C13	C11	0.9°	0.5°
C8	C14	C13	H14	180.0°	179.6°
C8	C14	C13	H13	179.1°	179.7°
C9	C10	C11	H10	180.0°	179.9°
C9	C10	C11	CL12	179.4°	180.0°
C9	C10	C11	C13	0.2°	0.0°
H9	C9	C10	C11	179.0°	180.0°
H9	C9	C10	H10	1.0°	0.1°
C10	C11	CL12	C13	179.6°	179.9°
C10	C11	C13	C14	0.2°	0.2°
C10	C11	C13	H13	179.8°	179.9°
H10	C10	C11	CL12	0.6°	0.1°
H10	C10	C11	C13	179.8°	180.0°
CL12	C11	C13	C14	179.4°	179.8°
CL12	C11	C13	H13	0.6°	0.0°
C11	C13	C14	H13	180.0°	179.8°
C11	C13	C14	H14	179.1°	179.9°
H13	C13	C14	H14	0.9°	0.1°

223790

PDB entries from 2024-08-14

PDB statistics

PDBj update info

Contact PDBj

numon