Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

KYW

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CL2C2sing1.74Å1.74Å
C2N3doub1.32Å1.33ÅAromatic
C2N1sing1.32Å1.33ÅAromatic
N3C4sing1.33Å1.33ÅAromatic
N1C6doub1.33Å1.35ÅAromatic
O2'C2'sing1.43Å1.41Å
C20N6sing1.47Å1.47Å
C4C5doub1.41Å1.38ÅAromatic
C4N9sing1.37Å1.37ÅAromatic
C6N6sing1.38Å1.38Å
C6C5sing1.41Å1.43ÅAromatic
C2'C1'sing1.55Å1.53Å
C2'C3'sing1.55Å1.52Å
C1'N9sing1.47Å1.45Å
C1'O4'sing1.44Å1.41Å
N6C21sing1.47Å1.47Å
C5N7sing1.36Å1.39ÅAromatic
N9C8sing1.36Å1.37ÅAromatic
O3'C3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.53Å
O4'C4'sing1.44Å1.44Å
C26C27doub1.38Å1.38ÅAromatic
C26C25sing1.38Å1.39ÅAromatic
C27C22sing1.38Å1.38ÅAromatic
C4'C5'sing1.53Å1.50Å
C21C25sing1.51Å1.51Å
C8N7doub1.30Å1.31ÅAromatic
C25C24doub1.38Å1.39ÅAromatic
C22C23doub1.38Å1.38ÅAromatic
C24C23sing1.38Å1.38ÅAromatic
C5'O5'sing1.43Å1.44Å
O5'PAsing1.61Å1.58Å
O1APAdoub1.48Å1.52Å
PAO2Asing1.61Å1.54Å
PAC3Asing1.82Å1.80Å
O2BPBdoub1.48Å1.54Å
C3APBsing1.82Å1.79Å
PBO3Bsing1.61Å1.54Å
PBO1Bsing1.61Å1.49Å
C8H8sing1.08Å1.08Å
C20H1sing1.09Å1.10Å
C20H2sing1.09Å1.10Å
C20H3sing1.09Å1.10Å
C21H5sing1.09Å1.10Å
C21H4sing1.09Å1.10Å
C22H21sing1.08Å1.08Å
C24H23sing1.08Å1.08Å
C26H25sing1.08Å1.08Å
O1BH6sing0.97Å0.95Å
O3BH7sing0.97Å0.95Å
O2AH9sing0.97Å0.95Å
C3AH3A2sing1.09Å1.10Å
C3AH3A1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C23H22sing1.08Å1.08Å
C27H26sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CL2C2N3114.7°118.7°
CL2C2N1114.7°118.8°
N3C2N1130.7°122.5°
C2N3C4110.8°120.6°
C2N1C6116.8°121.2°
N3C4C5126.8°119.1°
N3C4N9127.2°134.9°
N1C6N6115.2°120.8°
N1C6C5118.8°118.5°
O2'C2'C1'108.2°110.9°
O2'C2'C3'112.5°111.0°
O2'C2'H2'112.2°110.8°
C2'O2'HO2'109.5°114.0°
C20N6C6120.2°111.0°
C20N6C21113.0°111.0°
N6C20H1109.5°109.4°
N6C20H2109.5°109.4°
N6C20H3109.4°109.4°
C5C4N9105.9°106.0°
C4C5C6115.7°118.2°
C4C5N7110.5°107.1°
C4N9C1'124.2°126.2°
C4N9C8105.9°107.5°
N6C6C5125.6°120.8°
C6N6C21126.8°111.0°
C6C5N7133.7°134.7°
C1'C2'C3'102.4°102.0°
C2'C1'N9115.5°110.6°
C2'C1'O4'108.4°103.5°
C1'C2'H2'110.4°110.9°
C2'C1'H1'106.8°110.6°
C2'C3'O3'116.6°110.6°
C2'C3'C4'102.5°104.2°
C2'C3'H3'108.5°110.5°
C3'C2'H2'110.6°110.9°
N9C1'O4'109.7°110.6°
C1'N9C8129.9°126.3°
N9C1'H1'107.8°110.5°
C1'O4'C4'109.6°106.9°
O4'C1'H1'108.4°110.8°
N6C21C25111.6°109.5°
N6C21H5108.9°109.4°
N6C21H4108.9°109.5°
C5N7C8103.7°109.4°
N9C8N7113.9°110.0°
N9C8H8123.0°125.0°
O3'C3'C4'110.6°110.5°
O3'C3'H3'109.8°110.4°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'104.7°107.4°
C3'C4'C5'112.3°109.9°
C3'C4'H4'109.5°109.9°
C4'C3'H3'108.4°110.5°
O4'C4'C5'109.8°109.9°
O4'C4'H4'110.7°109.9°
C27C26C25120.7°120.0°
C26C27C22120.2°120.1°
C27C26H25119.7°120.1°
C26C27H26119.9°120.0°
C26C25C21120.5°120.0°
C26C25C24118.6°120.0°
C25C26H25119.6°120.0°
C27C22C23119.7°120.0°
C27C22H21120.2°120.0°
C22C27H26119.9°120.0°
C4'C5'O5'112.2°109.5°
C4'C5'H5'2108.8°109.5°
C4'C5'H5'1108.8°109.5°
C5'C4'H4'109.8°109.8°
C21C25C24120.7°120.0°
C25C21H5108.9°109.4°
C25C21H4108.9°109.5°
N7C8H8123.1°125.0°
C25C24C23120.7°120.0°
C25C24H23119.7°120.0°
C22C23C24120.2°120.0°
C23C22H21120.2°120.0°
C22C23H22119.9°120.0°
C23C24H23119.6°120.0°
C24C23H22119.9°120.0°
C5'O5'PA119.8°123.0°
O5'C5'H5'2108.8°109.4°
O5'C5'H5'1108.8°109.5°
O5'PAO1A110.9°109.5°
O5'PAO2A107.3°109.5°
O5'PAC3A107.6°109.5°
O1APAO2A105.7°109.4°
O1APAC3A115.8°109.5°
O2APAC3A109.2°109.5°
PAO2AH9109.5°114.0°
PAC3APB119.8°109.5°
PAC3AH3A2106.8°109.5°
PAC3AH3A1106.8°109.5°
O2BPBC3A108.5°109.5°
O2BPBO3B103.1°109.5°
O2BPBO1B109.7°109.4°
C3APBO3B106.8°109.5°
C3APBO1B113.3°109.5°
PBC3AH3A2106.8°109.5°
PBC3AH3A1106.8°109.5°
O3BPBO1B114.9°109.4°
PBO3BH7109.5°114.0°
PBO1BH6109.5°114.1°
H1C20H2109.5°109.5°
H1C20H3109.5°109.5°
H2C20H3109.5°109.5°
H5C21H4109.5°109.5°
H3A2C3AH3A1109.5°109.5°
H5'2C5'H5'1109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CL2C2N3N1179.7°179.9°
CL2C2N3C4178.3°180.0°
CL2C2N1C6172.8°180.0°
N3C2N1C67.5°0.0°
C2N3C4C53.4°0.0°
C2N3C4N9179.3°180.0°
N1C2N3C42.0°0.1°
C2N1C6N6179.8°180.0°
C2N1C6C57.6°0.0°
N3C4C5N9176.6°180.0°
N3C4C5C62.6°0.1°
N3C4N9C1'6.4°0.0°
N3C4C5N7174.3°180.0°
N3C4N9C8174.8°180.0°
N1C6N6C208.2°124.0°
N1C6C5C43.2°0.1°
N1C6N6C5172.0°180.0°
N1C6N6C21171.0°0.0°
N1C6C5N7179.3°179.9°
O2'C2'C1'C3'119.0°118.3°
O2'C2'C1'H2'123.2°123.6°
O2'C2'C3'H2'126.4°123.7°
O2'C2'C1'N9135.6°86.2°
O2'C2'C1'O4'100.8°155.3°
O2'C2'C3'O3'36.6°20.3°
O2'C2'C3'C4'84.5°139.1°
O2'C2'C3'H3'161.0°102.2°
O2'C2'C1'H1'15.7°36.6°
C20N6C6C21179.2°124.0°
C20N6C6C5179.8°56.0°
C20N6C21C2549.3°66.0°
N6C20H1H2120.0°119.9°
N6C20H1H3120.0°120.0°
N6C20H2H3120.0°120.0°
C20N6C21H571.0°53.9°
C20N6C21H4169.6°173.9°
C4C5C6N6175.0°180.0°
C4C5C6N7176.1°179.9°
C5C4N9C1'176.9°180.0°
C5C4N9C81.8°0.0°
C4C5N7C81.8°0.1°
N9C4C5C6179.3°180.0°
C4N9C1'C2'84.1°85.0°
C4N9C1'C8178.4°180.0°
C4N9C1'O4'153.1°160.9°
N9C4C5N72.3°0.1°
C4N9C8N70.8°0.0°
C4N9C8H8179.2°179.9°
C4N9C1'H1'35.2°37.8°
N6C6C5N78.9°0.1°
C6N6C21C25129.9°170.0°
C6N6C20H1180.0°60.0°
C6N6C20H260.0°180.0°
C6N6C20H360.0°60.0°
C6N6C21H5109.7°70.0°
C6N6C21H49.6°50.0°
C5C6N6C211.0°180.0°
C6C5N7C8178.0°179.9°
C1'C2'C3'H2'117.6°118.1°
C2'C1'N9O4'122.9°114.1°
C2'C1'N9H1'119.3°122.9°
C2'C1'O4'H1'115.6°118.6°
C2'C1'N9C894.4°95.0°
C1'C2'C3'O3'152.5°97.9°
C1'C2'C3'C4'31.5°20.9°
C2'C1'O4'C4'3.8°39.9°
C1'C2'C3'H3'83.0°139.6°
C1'C2'O2'HO2'180.0°180.0°
C3'C2'C1'N9105.4°155.5°
C3'C2'C1'O4'18.2°37.0°
C2'C3'O3'C4'116.6°114.9°
C2'C3'O3'H3'123.8°122.5°
C2'C3'C4'H3'114.6°118.7°
C2'C3'C4'O4'34.8°2.0°
C2'C3'C4'C5'153.9°121.5°
C2'C3'C4'H4'83.9°117.5°
C2'C3'O3'HO3'180.0°65.1°
C3'C2'O2'HO2'67.6°67.3°
C3'C2'C1'H1'134.8°81.7°
N9C1'O4'H1'117.5°122.9°
N9C1'O4'C4'130.7°158.4°
C1'N9C8N7177.9°180.0°
C1'N9C8H82.1°0.1°
N9C1'C2'H2'12.4°37.4°
O4'C1'N9C828.5°19.1°
C1'O4'C4'C3'24.3°26.5°
C1'O4'C4'C5'145.1°146.0°
C1'O4'C4'H4'93.6°93.1°
O4'C1'C2'H2'136.0°81.2°
N6C21C25C2657.7°89.9°
N6C21C25H5120.3°119.9°
N6C21C25H4120.3°120.1°
N6C21C25C24116.7°90.9°
C21N6C20H10.7°64.0°
C21N6C20H2119.3°56.0°
C21N6C20H3120.7°176.0°
N6C21H5H4119.0°120.0°
C5N7C8N90.6°0.0°
C5N7C8H8179.4°179.9°
N9C8N7H8180.0°179.9°
C8N9C1'H1'146.3°142.1°
O3'C3'C4'H3'120.4°122.5°
O3'C3'C4'O4'159.8°120.7°
O3'C3'C4'C5'81.0°119.7°
O3'C3'C4'H4'41.2°1.3°
O3'C3'C2'H2'89.8°144.0°
C3'C4'O4'C5'120.7°119.5°
C3'C4'O4'H4'117.9°119.5°
C3'C4'C5'H4'122.0°121.0°
C3'C4'C5'O5'170.1°175.3°
C3'C4'C5'H5'269.5°64.7°
C3'C4'C5'H5'149.7°55.3°
C4'C3'O3'HO3'63.4°180.0°
C4'C3'C2'H2'149.1°97.3°
O4'C4'C5'H4'121.9°121.0°
O4'C4'C5'O5'54.0°66.7°
O4'C4'C5'H5'2174.4°53.3°
O4'C4'C5'H5'166.4°173.3°
O4'C4'C3'H3'79.8°116.7°
C4'O4'C1'H1'111.8°78.6°
C27C26C25H25180.0°179.4°
C26C27C22H26180.0°180.0°
C27C26C25C21174.3°180.0°
C27C26C25C240.2°0.8°
C26C27C22C230.3°0.0°
C26C27C22H21179.7°179.7°
C25C26C27C220.0°0.5°
C26C25C21C24174.3°179.2°
C26C25C24C230.7°0.6°
C26C25C21H5178.0°30.0°
C26C25C21H462.7°150.0°
C26C25C24H23179.2°179.5°
C25C26C27H26179.9°179.5°
C27C22C23H21180.0°179.7°
C27C22C23C240.8°0.3°
C22C27C26H25179.9°180.0°
C27C22C23H22179.1°179.8°
C4'C5'O5'H5'2120.4°120.0°
C4'C5'O5'H5'1120.4°120.0°
C4'C5'O5'PA162.0°180.0°
C4'C5'H5'2H5'1118.8°120.0°
C5'C4'C3'H3'39.4°2.8°
C21C25C24C23173.7°179.8°
C25C21H5H4119.0°120.0°
C21C25C24H236.3°0.2°
C21C25C26H255.7°0.5°
C25C24C23C221.1°0.0°
C25C24C23H23180.0°180.0°
C24C25C21H53.6°149.2°
C24C25C21H4123.0°29.2°
C24C25C26H25179.8°179.7°
C25C24C23H22178.9°179.9°
C22C23C24H22180.0°179.9°
C22C23C24H23178.9°180.0°
C23C22C27H26179.7°179.9°
C24C23C22H21179.1°180.0°
C5'O5'PAO1A67.5°55.0°
C5'O5'PAO2A177.5°65.0°
C5'O5'PAC3A60.1°175.0°
O5'C5'H5'2H5'1118.7°120.0°
O5'C5'C4'H4'67.9°54.3°
O5'PAO1AO2A116.0°120.0°
O5'PAO1AC3A122.9°120.0°
O5'PAO2AC3A116.3°120.0°
O5'PAC3APB53.7°180.0°
O5'PAO2AH9118.4°60.0°
O5'PAC3AH3A2175.1°60.0°
O5'PAC3AH3A167.8°60.0°
PAO5'C5'H5'241.6°60.0°
PAO5'C5'H5'177.6°60.0°
O1APAO2AC3A125.2°120.0°
O1APAC3APB178.4°60.0°
O1APAO2AH90.0°180.0°
O1APAC3AH3A260.2°180.0°
O1APAC3AH3A156.9°60.0°
O2APAC3APB62.5°60.0°
O2APAC3AH3A258.9°60.0°
O2APAC3AH3A1176.0°180.0°
PAC3APBO2B52.2°60.0°
PAC3APBH3A2121.4°120.0°
PAC3APBH3A1121.5°120.0°
PAC3APBO3B58.3°60.1°
PAC3APBO1B174.3°180.0°
C3APAO2AH9125.2°60.0°
PAC3AH3A2H3A1115.3°120.0°
O2BPBC3AO3B110.5°120.1°
O2BPBC3AO1B122.0°120.0°
O2BPBO3BO1B119.3°119.9°
O2BPBO1BH60.0°60.0°
O2BPBO3BH70.0°180.0°
O2BPBC3AH3A2173.6°179.9°
O2BPBC3AH3A169.2°60.0°
C3APBO3BO1B126.6°120.0°
C3APBO1BH6121.4°180.0°
C3APBO3BH7114.2°59.9°
PBC3AH3A2H3A1115.3°120.0°
O3BPBO1BH6115.5°60.0°
O3BPBC3AH3A263.2°60.0°
O3BPBC3AH3A1179.7°180.0°
O1BPBO3BH7119.2°60.1°
O1BPBC3AH3A264.3°60.0°
O1BPBC3AH3A152.8°60.0°
H1C20H2H3120.0°120.1°
H21C22C23H220.9°0.1°
H21C22C27H260.3°0.3°
H23C24C23H221.1°0.1°
H25C26C27H260.1°0.1°
H5'2C5'C4'H4'52.6°174.3°
H5'1C5'C4'H4'171.7°65.8°
H4'C4'C3'H3'161.5°123.8°
H3'C3'O3'HO3'56.2°57.4°
H3'C3'C2'H2'34.6°21.5°
H2'C2'O2'HO2'57.9°56.4°
H2'C2'C1'H1'107.5°160.2°

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon