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KYK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N3doub1.32Å1.33ÅAromatic
C2N1sing1.32Å1.33ÅAromatic
N3C4sing1.33Å1.33ÅAromatic
N1C6doub1.33Å1.34ÅAromatic
O2'C2'sing1.43Å1.42Å
C4C5doub1.41Å1.38ÅAromatic
C4N9sing1.37Å1.37ÅAromatic
C2'C1'sing1.55Å1.54Å
C2'C3'sing1.55Å1.53Å
C6N6sing1.38Å1.34Å
C6C5sing1.40Å1.42ÅAromatic
C1'N9sing1.46Å1.45Å
C1'O4'sing1.44Å1.41Å
N6C21sing1.47Å1.45Å
C5N7sing1.36Å1.39ÅAromatic
N9C8sing1.36Å1.37ÅAromatic
O3'C3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.52Å
O4'C4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.50Å
C21C25sing1.51Å1.51Å
C8N7doub1.30Å1.31ÅAromatic
C26C25doub1.38Å1.39ÅAromatic
C26C27sing1.38Å1.39ÅAromatic
C25C24sing1.38Å1.39ÅAromatic
C27C22doub1.38Å1.38ÅAromatic
C24C23doub1.38Å1.38ÅAromatic
C22C23sing1.38Å1.38ÅAromatic
C5'O5'sing1.43Å1.44Å
O5'PAsing1.61Å1.58Å
O2APAdoub1.48Å1.56Å
PAO1Asing1.61Å1.49Å
PAC3Asing1.82Å1.81Å
O3BPBdoub1.48Å1.54Å
C3APBsing1.82Å1.80Å
PBO1Bsing1.61Å1.49Å
PBO2Bsing1.61Å1.54Å
C8H8sing1.08Å1.08Å
C21H3sing1.09Å1.10Å
C21H1sing1.09Å1.10Å
C22H21sing1.08Å1.08Å
C24H23sing1.08Å1.08Å
C26H25sing1.08Å1.08Å
O1BH4sing0.97Å0.95Å
O2BH5sing0.97Å0.95Å
O1AH6sing0.97Å0.95Å
C3AH3A2sing1.09Å1.10Å
C3AH3A1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
N6HN61sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
C23H22sing1.08Å1.08Å
C27H26sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N3C2N1128.9°122.4°
C2N3C4111.3°120.7°
N3C2H2115.6°118.8°
C2N1C6118.8°121.2°
N1C2H2115.6°118.8°
N3C4C5126.9°119.0°
N3C4N9127.2°134.9°
N1C6N6117.0°120.8°
N1C6C5118.0°118.4°
O2'C2'C1'108.1°110.9°
O2'C2'C3'112.1°111.0°
O2'C2'H2'112.4°110.8°
C2'O2'HO2'109.5°114.0°
C5C4N9106.0°106.0°
C4C5C6116.2°118.2°
C4C5N7110.6°107.1°
C4N9C1'124.1°126.3°
C4N9C8105.7°107.4°
C1'C2'C3'102.5°102.1°
C2'C1'N9115.3°110.6°
C2'C1'O4'108.2°103.4°
C1'C2'H2'110.6°110.9°
C2'C1'H1'107.0°110.6°
C2'C3'O3'116.5°110.6°
C2'C3'C4'102.4°104.2°
C2'C3'H3'109.1°110.5°
C3'C2'H2'110.6°110.9°
N6C6C5125.1°120.8°
C6N6C21125.1°120.0°
C6N6HN61105.4°120.0°
C6C5N7133.2°134.7°
N9C1'O4'109.7°110.7°
C1'N9C8130.1°126.3°
N9C1'H1'108.0°110.6°
C1'O4'C4'109.3°107.0°
O4'C1'H1'108.5°110.7°
N6C21C25109.7°109.4°
N6C21H3109.4°109.5°
N6C21H1109.4°109.5°
C21N6HN61105.4°120.0°
C5N7C8103.7°109.4°
N9C8N7114.1°110.0°
N9C8H8122.9°125.0°
O3'C3'C4'108.6°110.5°
O3'C3'H3'110.5°110.4°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'104.8°107.4°
C3'C4'C5'112.6°109.9°
C3'C4'H4'109.3°109.9°
C4'C3'H3'109.3°110.5°
O4'C4'C5'110.2°109.8°
O4'C4'H4'110.4°109.9°
C4'C5'O5'110.4°109.5°
C4'C5'H5'2109.2°109.5°
C4'C5'H5'1109.2°109.5°
C5'C4'H4'109.5°109.9°
C21C25C26120.4°120.0°
C21C25C24121.1°120.0°
C25C21H3109.4°109.4°
C25C21H1109.4°109.5°
N7C8H8123.0°125.0°
C25C26C27120.7°120.0°
C26C25C24118.6°120.0°
C25C26H25119.6°120.0°
C26C27C22120.1°120.0°
C27C26H25119.7°119.9°
C26C27H26119.9°120.1°
C25C24C23120.7°120.0°
C25C24H23119.7°120.0°
C27C22C23119.7°120.0°
C27C22H21120.1°120.0°
C22C27H26119.9°120.0°
C24C23C22120.2°120.0°
C23C24H23119.6°120.1°
C24C23H22119.9°120.0°
C23C22H21120.2°120.0°
C22C23H22119.9°120.0°
C5'O5'PA121.5°123.0°
O5'C5'H5'2109.2°109.5°
O5'C5'H5'1109.2°109.5°
O5'PAO2A106.0°109.5°
O5'PAO1A105.1°109.5°
O5'PAC3A101.6°109.5°
O2APAO1A111.6°109.4°
O2APAC3A107.0°109.5°
O1APAC3A123.8°109.5°
PAO1AH6109.5°114.0°
PAC3APB114.8°109.5°
PAC3AH3A2108.1°109.5°
PAC3AH3A1108.1°109.4°
O3BPBC3A107.9°109.5°
O3BPBO1B109.6°109.5°
O3BPBO2B104.3°109.5°
C3APBO1B111.6°109.4°
C3APBO2B110.5°109.4°
PBC3AH3A2108.1°109.5°
PBC3AH3A1108.1°109.5°
O1BPBO2B112.5°109.5°
PBO1BH4109.5°114.0°
PBO2BH5109.5°114.0°
H3C21H1109.5°109.5°
H3A2C3AH3A1109.5°109.5°
H5'2C5'H5'1109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N3C2N1H2180.0°179.9°
N3C2N1C61.1°0.1°
C2N3C4C50.1°0.0°
C2N3C4N9177.5°180.0°
N1C2N3C40.8°0.1°
C2N1C6N6179.7°180.0°
C2N1C6C50.4°0.1°
N3C4C5N9178.0°180.0°
N3C4C5C60.6°0.0°
N3C4N9C1'2.6°0.0°
N3C4C5N7178.1°180.0°
N3C4N9C8177.8°180.0°
C4N3C2H2179.1°180.0°
N1C6C5C40.4°0.0°
N1C6N6C5179.9°179.9°
N1C6N6C21180.0°0.0°
N1C6C5N7177.2°180.0°
N1C6N6HN6157.9°179.9°
C6N1C2H2178.9°180.0°
O2'C2'C1'C3'118.6°118.3°
O2'C2'C1'H2'123.5°123.5°
O2'C2'C3'H2'126.3°123.7°
O2'C2'C1'N9133.6°86.2°
O2'C2'C1'O4'103.2°155.3°
O2'C2'C3'O3'33.2°20.3°
O2'C2'C3'C4'85.2°139.0°
O2'C2'C3'H3'159.1°102.3°
O2'C2'C1'H1'13.5°36.7°
C4C5C6N6179.5°180.0°
C4C5C6N7176.8°179.9°
C5C4N9C1'179.4°180.0°
C5C4N9C80.1°0.0°
C4C5N7C80.4°0.0°
C4N9C1'C2'79.7°85.0°
N9C4C5C6177.4°180.0°
C4N9C1'C8179.4°180.0°
C4N9C1'O4'157.9°160.9°
N9C4C5N70.1°0.0°
C4N9C8N70.4°0.0°
C4N9C8H8179.6°180.0°
C4N9C1'H1'39.8°37.9°
C1'C2'C3'H2'118.0°118.2°
C2'C1'N9O4'122.4°114.1°
C2'C1'N9H1'119.5°122.9°
C2'C1'O4'H1'115.8°118.5°
C2'C1'N9C899.7°95.0°
C1'C2'C3'O3'148.9°97.9°
C1'C2'C3'C4'30.5°20.9°
C2'C1'O4'C4'7.3°40.0°
C1'C2'C3'H3'85.1°139.5°
C1'C2'O2'HO2'180.0°180.0°
C3'C2'C1'N9107.9°155.5°
C3'C2'C1'O4'15.3°37.0°
C2'C3'O3'C4'114.9°114.8°
C2'C3'O3'H3'125.2°122.6°
C2'C3'C4'H3'115.5°118.7°
C2'C3'C4'O4'35.9°2.0°
C2'C3'C4'C5'155.7°121.4°
C2'C3'C4'H4'82.4°117.6°
C2'C3'O3'HO3'180.0°65.2°
C3'C2'O2'HO2'67.8°67.3°
C3'C2'C1'H1'132.1°81.6°
C6N6C21HN61122.1°180.0°
N6C6C5N72.7°0.1°
C6N6C21C25167.7°180.0°
C6N6C21H372.3°60.0°
C6N6C21H147.6°60.0°
C5C6N6C210.1°180.0°
C6C5N7C8176.6°180.0°
C5C6N6HN61122.3°0.0°
N9C1'O4'H1'117.7°123.0°
N9C1'O4'C4'133.8°158.5°
C1'N9C8N7179.1°180.0°
C1'N9C8H80.9°0.0°
N9C1'C2'H2'10.1°37.3°
O4'C1'N9C822.7°19.1°
C1'O4'C4'C3'27.4°26.5°
C1'O4'C4'C5'148.8°145.9°
C1'O4'C4'H4'90.1°93.0°
O4'C1'C2'H2'133.3°81.2°
N6C21C25H3120.0°119.9°
N6C21C25H1120.0°120.0°
N6C21C25C2681.1°90.0°
N6C21C25C2498.0°90.8°
N6C21H3H1119.9°120.1°
C5N7C8N90.5°0.0°
C5N7C8H8179.5°180.0°
N9C8N7H8180.0°180.0°
C8N9C1'H1'140.8°142.1°
O3'C3'C4'H3'120.7°122.5°
O3'C3'C4'O4'159.7°120.8°
O3'C3'C4'C5'80.5°119.8°
O3'C3'C4'H4'41.4°1.3°
O3'C3'C2'H2'93.2°144.0°
C3'C4'O4'C5'121.3°119.5°
C3'C4'O4'H4'117.6°119.5°
C3'C4'C5'H4'121.8°121.0°
C3'C4'C5'O5'173.2°175.3°
C3'C4'C5'H5'266.6°64.7°
C3'C4'C5'H5'153.0°55.3°
C4'C3'O3'HO3'65.1°180.0°
C4'C3'C2'H2'148.5°97.3°
O4'C4'C5'H4'121.6°121.0°
O4'C4'C5'O5'56.6°66.8°
O4'C4'C5'H5'2176.8°53.3°
O4'C4'C5'H5'163.5°173.3°
O4'C4'C3'H3'79.6°116.7°
C4'O4'C1'H1'108.4°78.5°
C4'C5'O5'H5'2120.2°120.0°
C4'C5'O5'H5'1120.2°120.0°
C4'C5'O5'PA166.4°180.0°
C4'C5'H5'2H5'1119.6°120.0°
C5'C4'C3'H3'40.2°2.8°
C21C25C26C24179.1°179.2°
C21C25C26C27178.9°180.0°
C21C25C24C23179.9°179.7°
C25C21H3H1119.9°120.0°
C21C25C24H230.1°0.3°
C21C25C26H251.1°0.9°
C25C21N6HN6145.5°0.1°
C25C26C27H25180.0°179.1°
C25C26C27C221.8°0.5°
C26C25C24C231.0°0.6°
C26C25C21H3158.9°29.9°
C26C25C21H139.0°150.0°
C26C25C24H23179.0°179.4°
C25C26C27H26178.2°179.4°
C27C26C25C242.0°0.8°
C26C27C22H26180.0°180.0°
C26C27C22C230.6°0.1°
C26C27C22H21179.4°179.7°
C25C24C23H23180.0°180.0°
C25C24C23C220.2°0.0°
C24C25C21H322.0°149.2°
C24C25C21H1142.0°29.2°
C24C25C26H25178.0°179.9°
C25C24C23H22179.8°180.0°
C27C22C23C240.4°0.3°
C27C22C23H21180.0°179.7°
C22C27C26H25178.2°179.6°
C27C22C23H22179.6°179.7°
C24C23C22H22180.0°179.9°
C24C23C22H21179.6°180.0°
C22C23C24H23179.8°180.0°
C23C22C27H26179.4°180.0°
C5'O5'PAO2A56.8°54.9°
C5'O5'PAO1A175.1°65.0°
C5'O5'PAC3A54.8°175.0°
O5'C5'H5'2H5'1119.5°120.0°
O5'C5'C4'H4'65.0°54.3°
O5'PAO2AO1A113.9°120.0°
O5'PAO2AC3A107.9°120.0°
O5'PAO1AC3A115.6°120.0°
O5'PAC3APB66.7°180.0°
O5'PAO1AH6114.4°60.0°
O5'PAC3AH3A2172.5°60.0°
O5'PAC3AH3A154.0°60.0°
PAO5'C5'H5'246.2°60.0°
PAO5'C5'H5'173.5°60.0°
O2APAO1AC3A130.0°120.0°
O2APAC3APB177.6°60.0°
O2APAO1AH60.0°180.0°
O2APAC3AH3A261.6°180.0°
O2APAC3AH3A156.9°60.0°
O1APAC3APB50.5°60.0°
O1APAC3AH3A270.3°60.0°
O1APAC3AH3A1171.2°180.0°
PAC3APBO3B70.3°60.0°
PAC3APBH3A2120.8°120.0°
PAC3APBH3A1120.8°120.0°
PAC3APBO1B50.2°180.0°
PAC3APBO2B176.3°60.0°
C3APAO1AH6130.0°60.0°
PAC3AH3A2H3A1117.6°120.0°
O3BPBC3AO1B120.5°120.0°
O3BPBC3AO2B113.4°120.0°
O3BPBO1BO2B115.6°120.1°
O3BPBO1BH40.0°60.0°
O3BPBO2BH50.0°180.0°
O3BPBC3AH3A2168.9°60.0°
O3BPBC3AH3A150.5°180.0°
C3APBO1BO2B125.0°120.0°
C3APBO1BH4119.4°180.0°
C3APBO2BH5115.7°60.0°
PBC3AH3A2H3A1117.6°120.0°
O1BPBO2BH5118.8°59.9°
O1BPBC3AH3A270.6°60.0°
O1BPBC3AH3A1170.9°60.0°
O2BPBO1BH4115.6°60.1°
O2BPBC3AH3A255.5°180.0°
O2BPBC3AH3A163.0°60.0°
H3C21N6HN61165.5°120.0°
H1C21N6HN6174.5°119.9°
H21C22C23H220.4°0.0°
H21C22C27H260.6°0.3°
H23C24C23H220.2°0.0°
H25C26C27H261.8°0.3°
H5'2C5'C4'H4'55.2°174.3°
H5'1C5'C4'H4'174.9°65.7°
H4'C4'C3'H3'162.1°123.8°
H3'C3'O3'HO3'54.8°57.5°
H3'C3'C2'H2'32.8°21.4°
H2'C2'O2'HO2'57.6°56.4°
H2'C2'C1'H1'109.9°160.2°

223790

PDB entries from 2024-08-14

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