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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C8C9doub1.38Å1.39ÅAromatic
C8C7sing1.38Å1.40ÅAromatic
C6C4sing1.48Å1.36Å
C6C7doub1.39Å1.40ÅAromatic
C6C11sing1.39Å1.40ÅAromatic
C10C9sing1.38Å1.39ÅAromatic
C10C11doub1.38Å1.39ÅAromatic
C1S2sing1.71Å1.58ÅAromatic
C1N5doub1.29Å1.34ÅAromatic
C1C1'sing1.51Å1.52Å
S2C3sing1.76Å1.67ÅAromatic
C3C4doub1.35Å1.35ÅAromatic
C4N5sing1.33Å1.36ÅAromatic
C1'O5'sing1.43Å1.42Å
C1'C2'sing1.53Å1.55Å
O5'C5'sing1.43Å1.44Å
C5'C6'sing1.53Å1.54Å
C5'C4'sing1.53Å1.54Å
C6'O6'sing1.43Å1.43Å
C4'O4'sing1.43Å1.43Å
C4'C3'sing1.53Å1.52Å
C3'O3'sing1.43Å1.46Å
C3'C2'sing1.53Å1.55Å
C2'O2'sing1.43Å1.42Å
C8H1sing1.08Å1.08Å
C10H2sing1.08Å1.08Å
C9H3sing1.08Å1.08Å
C3H6sing1.08Å1.08Å
C7H8sing1.08Å1.08Å
C11H9sing1.08Å1.08Å
C1'H10sing1.09Å1.10Å
C5'H11sing1.09Å1.10Å
C6'H12sing1.09Å1.10Å
C6'H13sing1.09Å1.10Å
O6'H14sing0.97Å0.95Å
C4'H15sing1.09Å1.10Å
O4'H16sing0.97Å0.95Å
C3'H17sing1.09Å1.10Å
O3'H18sing0.97Å0.95Å
C2'H19sing1.09Å1.10Å
O2'H20sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C9C8C7119.9°120.2°
C8C9C10119.4°120.2°
C9C8H1120.1°119.9°
C8C9H3120.3°119.9°
C8C7C6121.7°119.8°
C7C8H1120.1°120.0°
C8C7H8119.1°120.1°
C4C6C7123.2°120.1°
C4C6C11119.9°120.1°
C6C4C3124.3°122.9°
C6C4N5123.2°123.0°
C7C6C11117.0°119.8°
C6C7H8119.2°120.1°
C6C11C10121.9°119.8°
C6C11H9119.1°120.1°
C9C10C11120.2°120.2°
C9C10H2119.9°119.9°
C10C9H3120.3°119.9°
C11C10H2119.9°119.9°
C10C11H9119.1°120.1°
S2C1N5109.7°110.5°
S2C1C1'124.5°124.8°
C1S2C396.3°90.5°
N5C1C1'125.8°124.7°
C1N5C4114.0°117.1°
C1C1'O5'108.2°109.4°
C1C1'C2'111.2°109.5°
C1C1'H10109.0°109.5°
S2C3C4107.5°107.9°
S2C3H6126.3°126.1°
C3C4N5112.5°114.1°
C4C3H6126.2°126.1°
O5'C1'C2'109.4°109.4°
C1'O5'C5'109.5°114.1°
O5'C1'H10110.3°109.5°
C1'C2'C3'109.4°109.1°
C1'C2'O2'109.7°109.5°
C2'C1'H10108.6°109.5°
C1'C2'H19108.7°109.5°
O5'C5'C6'108.0°109.5°
O5'C5'C4'110.7°109.4°
O5'C5'H11110.0°109.5°
C6'C5'C4'110.8°109.5°
C5'C6'O6'111.4°109.5°
C6'C5'H11108.6°109.5°
C5'C6'H12109.0°109.4°
C5'C6'H13109.0°109.5°
C5'C4'O4'109.6°109.5°
C5'C4'C3'111.3°109.2°
C4'C5'H11108.6°109.5°
C5'C4'H15108.4°109.5°
O6'C6'H12109.0°109.5°
O6'C6'H13109.0°109.5°
C6'O6'H14109.5°114.0°
O4'C4'C3'108.9°109.5°
O4'C4'H15109.9°109.5°
C4'O4'H16109.5°114.0°
C4'C3'O3'109.9°109.5°
C4'C3'C2'108.7°109.1°
C3'C4'H15108.7°109.6°
C4'C3'H17108.7°109.5°
O3'C3'C2'111.7°109.5°
O3'C3'H17109.4°109.6°
C3'O3'H18109.5°114.0°
C3'C2'O2'109.9°109.5°
C2'C3'H17108.3°109.6°
C3'C2'H19108.7°109.5°
O2'C2'H19110.4°109.6°
C2'O2'H20109.5°114.0°
H12C6'H13109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C9C8C7H1180.0°179.7°
C9C8C7C60.3°0.0°
C8C9C10H3180.0°179.9°
C8C9C10C110.4°0.1°
C8C9C10H2179.5°179.9°
C9C8C7H8179.7°179.9°
C8C7C6C4179.9°180.0°
C8C7C6H8180.0°180.0°
C8C7C6C110.1°0.0°
C7C8C9C100.5°0.1°
C7C8C9H3179.5°180.0°
C4C6C7C11180.0°179.9°
C4C6C11C10179.8°180.0°
C6C4N5C1178.6°179.9°
C6C4C3S2179.0°180.0°
C6C4C3N5179.0°180.0°
C6C4C3H61.0°0.1°
C4C6C7H80.1°0.0°
C4C6C11H90.1°0.0°
C7C6C11C100.2°0.0°
C7C6C4C31.0°5.1°
C7C6C4N5177.9°175.0°
C6C7C8H1179.7°179.8°
C7C6C11H9179.9°179.9°
C6C11C10C90.1°0.0°
C6C11C10H9180.0°179.9°
C11C6C4C3179.0°175.0°
C11C6C4N52.1°5.0°
C6C11C10H2179.9°179.9°
C11C6C7H8179.9°180.0°
C9C10C11H2180.0°180.0°
C10C9C8H1179.5°179.8°
C9C10C11H9179.9°179.9°
C11C10C9H3179.6°180.0°
S2C1N5C1'178.9°179.7°
C1S2C3C40.3°0.0°
S2C1N5C40.6°0.0°
S2C1C1'O5'89.3°45.0°
S2C1C1'C2'30.9°74.9°
C1S2C3H6179.8°180.0°
S2C1C1'H10150.6°165.1°
N5C1S2C30.5°0.0°
C1N5C4C30.4°0.0°
N5C1C1'O5'89.4°135.3°
N5C1C1'C2'150.4°104.8°
N5C1C1'H1030.7°15.3°
C1'C1S2C3179.4°179.7°
C1'C1N5C4179.5°179.7°
C1C1'O5'C2'121.4°119.9°
C1C1'O5'H10119.2°120.0°
C1C1'C2'H10119.9°120.0°
C1C1'O5'C5'172.5°178.9°
C1C1'C2'C3'178.9°177.6°
C1C1'C2'O2'58.2°62.5°
C1C1'C2'H1962.6°57.7°
S2C3C4H6180.0°180.0°
S2C3C4N50.1°0.0°
N5C4C3H6179.9°180.0°
O5'C1'C2'H10120.5°120.1°
C1'O5'C5'C6'175.1°178.8°
C1'O5'C5'C4'63.4°61.2°
O5'C1'C2'C3'61.6°57.6°
O5'C1'C2'O2'177.8°177.5°
C1'O5'C5'H1156.7°58.8°
O5'C1'C2'H1957.0°62.2°
C2'C1'O5'C5'66.1°61.2°
C1'C2'C3'C4'53.6°57.0°
C1'C2'C3'O3'175.1°176.8°
C1'C2'C3'O2'120.5°119.9°
C1'C2'C3'H19118.6°119.9°
C1'C2'O2'H19119.8°120.2°
C1'C2'C3'H1764.3°62.9°
C1'C2'O2'H20180.0°60.0°
O5'C5'C6'C4'121.4°119.9°
O5'C5'C6'H11119.3°120.0°
O5'C5'C4'H11121.0°120.0°
O5'C5'C6'O6'73.8°65.0°
O5'C5'C4'O4'177.3°177.5°
O5'C5'C4'C3'56.7°57.6°
C5'O5'C1'H1053.4°58.8°
O5'C5'C6'H1246.5°175.0°
O5'C5'C6'H13165.9°55.1°
O5'C5'C4'H1562.8°62.3°
C6'C5'C4'H11119.3°120.0°
C5'C6'O6'H12120.3°120.0°
C5'C6'O6'H13120.3°120.0°
C6'C5'C4'O4'63.0°62.5°
C6'C5'C4'C3'176.4°177.6°
C5'C6'H12H13119.1°120.0°
C5'C6'O6'H14180.0°180.0°
C6'C5'C4'H1557.0°57.6°
C4'C5'C6'O6'47.6°175.0°
C5'C4'O4'C3'122.0°119.7°
C5'C4'O4'H15119.0°120.2°
C5'C4'C3'H15119.3°120.0°
C5'C4'C3'O3'174.0°176.8°
C5'C4'C3'C2'51.5°57.0°
C4'C5'C6'H12167.9°55.1°
C4'C5'C6'H1372.7°64.9°
C5'C4'O4'H16180.0°180.0°
C5'C4'C3'H1766.2°63.0°
O6'C6'C5'H11166.8°55.0°
O6'C6'H12H13119.1°120.1°
O4'C4'C3'H15119.7°120.1°
O4'C4'C3'O3'64.9°63.3°
O4'C4'C3'C2'172.5°176.9°
O4'C4'C5'H1156.3°57.5°
O4'C4'C3'H1754.8°56.9°
C4'C3'O3'C2'120.7°119.5°
C4'C3'O3'H17119.3°120.2°
C4'C3'C2'H17117.9°119.9°
C4'C3'C2'O2'174.1°176.9°
C3'C4'C5'H1164.3°62.4°
C3'C4'O4'H1658.0°60.3°
C4'C3'O3'H18180.0°179.9°
C4'C3'C2'H1964.9°62.9°
O3'C3'C2'H17120.6°120.3°
O3'C3'C2'O2'64.4°63.3°
O3'C3'C4'H1554.8°56.9°
O3'C3'C2'H1956.5°56.9°
C3'C2'O2'H19119.9°120.2°
C3'C2'C1'H1058.9°62.4°
C2'C3'C4'H1567.8°63.0°
C2'C3'O3'H1859.3°60.5°
C3'C2'O2'H2059.7°179.7°
O2'C2'C1'H1061.7°57.5°
O2'C2'C3'H1756.2°57.0°
H1C8C9H30.5°0.3°
H1C8C7H80.3°0.2°
H2C10C9H30.5°0.0°
H2C10C11H90.1°0.1°
H10C1'C2'H19177.5°177.7°
H11C5'C6'H1272.9°65.0°
H11C5'C6'H1346.6°175.1°
H11C5'C4'H15176.2°177.7°
H12C6'O6'H1459.7°60.0°
H13C6'O6'H1459.7°60.0°
H15C4'O4'H1661.0°59.8°
H15C4'C3'H17174.5°177.1°
H17C3'O3'H1860.7°59.8°
H17C3'C2'H19177.1°177.2°
H19C2'O2'H2060.2°60.2°

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PDB entries from 2024-07-17

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