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Summary Geometry Related PDB entries

KPR

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.53Å
O3	C3	doub	1.21Å	1.22Å
C3	C2	sing	1.51Å	1.50Å
C3	C4	sing	1.41Å	1.47Å
N2	C2	sing	1.47Å	1.45Å
C4	C5	doub	1.35Å	1.33Å
C5	O5	sing	1.35Å	1.45Å
O5	P	sing	1.61Å	1.61Å
O1P	P	doub	1.48Å	1.51Å
P	O2P	sing	1.61Å	1.51Å
P	O3P	sing	1.61Å	1.50Å
O3P	H1	sing	0.97Å	0.95Å
O2P	H2	sing	0.97Å	0.95Å
C5	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C2	H5	sing	1.09Å	1.10Å
N2	H6	sing	1.01Å	1.00Å
N2	H7	sing	1.01Å	1.00Å
C1	H9	sing	1.09Å	1.10Å
C1	H10	sing	1.09Å	1.10Å
C1	H11	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C2	C3	111.2°	109.5°
C1	C2	N2	107.9°	109.5°
C1	C2	H5	109.3°	109.5°
C2	C1	H9	109.5°	109.5°
C2	C1	H10	109.5°	109.5°
C2	C1	H11	109.5°	109.5°
O3	C3	C2	120.3°	120.0°
O3	C3	C4	117.7°	120.0°
C2	C3	C4	122.0°	120.0°
C3	C2	N2	108.3°	109.4°
C3	C2	H5	109.7°	109.5°
C3	C4	C5	117.2°	120.0°
C3	C4	H4	121.4°	120.0°
N2	C2	H5	110.4°	109.5°
C2	N2	H6	109.5°	111.0°
C2	N2	H7	109.4°	111.0°
C4	C5	O5	118.1°	120.0°
C4	C5	H3	121.0°	120.0°
C5	C4	H4	121.4°	120.0°
C5	O5	P	123.7°	117.0°
O5	C5	H3	120.9°	120.0°
O5	P	O1P	102.2°	109.5°
O5	P	O2P	106.9°	109.4°
O5	P	O3P	102.2°	109.5°
O1P	P	O2P	114.6°	109.5°
O1P	P	O3P	113.9°	109.5°
O2P	P	O3P	115.1°	109.5°
P	O2P	H2	109.5°	114.0°
P	O3P	H1	109.5°	114.0°
H6	N2	H7	109.4°	111.0°
H9	C1	H10	109.4°	109.4°
H9	C1	H11	109.5°	109.5°
H10	C1	H11	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C2	C3	O3	107.2°	105.0°
C1	C2	C3	N2	118.4°	120.0°
C1	C2	C3	H5	121.1°	120.0°
C1	C2	C3	C4	73.0°	75.0°
C1	C2	N2	H5	119.5°	120.0°
C1	C2	N2	H6	180.0°	176.0°
C1	C2	N2	H7	60.0°	60.0°
C2	C1	H9	H10	120.0°	120.0°
C2	C1	H9	H11	120.0°	120.1°
C2	C1	H10	H11	120.0°	120.0°
O3	C3	C2	C4	179.8°	180.0°
O3	C3	C2	N2	11.2°	15.0°
O3	C3	C4	C5	23.1°	0.0°
O3	C3	C4	H4	156.9°	180.0°
O3	C3	C2	H5	131.7°	135.0°
C3	C2	N2	H5	120.1°	120.0°
C2	C3	C4	C5	156.7°	180.0°
C2	C3	C4	H4	23.3°	0.1°
C3	C2	N2	H6	59.5°	64.0°
C3	C2	N2	H7	60.5°	60.0°
C3	C2	C1	H9	180.0°	60.1°
C3	C2	C1	H10	60.0°	180.0°
C3	C2	C1	H11	60.0°	60.0°
C4	C3	C2	N2	168.6°	165.0°
C3	C4	C5	H4	180.0°	179.9°
C3	C4	C5	O5	179.8°	180.0°
C3	C4	C5	H3	0.2°	0.0°
C4	C3	C2	H5	48.0°	45.0°
C2	N2	H6	H7	120.0°	123.9°
N2	C2	C1	H9	61.4°	180.0°
N2	C2	C1	H10	58.6°	60.1°
N2	C2	C1	H11	178.6°	60.0°
C4	C5	O5	H3	180.0°	180.0°
C4	C5	O5	P	137.8°	180.0°
C5	O5	P	O1P	137.5°	55.0°
C5	O5	P	O2P	16.8°	175.0°
C5	O5	P	O3P	104.4°	65.0°
O5	C5	C4	H4	0.2°	0.1°
O5	P	O1P	O2P	115.2°	120.0°
O5	P	O1P	O3P	109.4°	120.0°
O5	P	O2P	O3P	112.6°	120.0°
O5	P	O3P	H1	109.4°	59.9°
O5	P	O2P	H2	112.5°	180.0°
P	O5	C5	H3	42.2°	0.0°
O1P	P	O2P	O3P	134.9°	120.0°
O1P	P	O3P	H1	0.0°	180.0°
O1P	P	O2P	H2	0.0°	60.0°
O2P	P	O3P	H1	135.2°	60.0°
O3P	P	O2P	H2	134.9°	60.0°
H3	C5	C4	H4	179.8°	179.9°
H5	C2	N2	H6	60.6°	56.0°
H5	C2	N2	H7	179.4°	180.0°
H5	C2	C1	H9	58.8°	59.9°
H5	C2	C1	H10	178.7°	60.0°
H5	C2	C1	H11	61.3°	180.0°
H9	C1	H10	H11	120.0°	120.0°

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