English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

KPA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OA	CA	doub	1.21Å	1.27Å
CA	C	sing	1.49Å	1.56Å
CA	CB	sing	1.51Å	1.42Å
C	O	sing	1.35Å	1.23Å
C	OXT	doub	1.21Å	1.23Å
O	HO	sing	0.97Å	0.95Å
CB	CG	sing	1.53Å	1.56Å
CB	HB1	sing	1.09Å	1.11Å
CB	HB2	sing	1.09Å	1.11Å
CG	CP	sing	1.53Å	1.53Å
CG	HG1	sing	1.09Å	1.12Å
CG	HG2	sing	1.09Å	1.12Å
CP	P	sing	1.82Å	1.81Å
CP	HP1	sing	1.09Å	1.11Å
CP	HP2	sing	1.09Å	1.11Å
P	O1	doub	1.48Å	1.51Å
P	O2	sing	1.61Å	1.51Å
P	O3	sing	1.61Å	1.48Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OA	CA	C	114.6°	120.0°
OA	CA	CB	116.3°	120.0°
C	CA	CB	129.1°	120.0°
CA	C	O	117.4°	119.9°
CA	C	OXT	120.7°	120.0°
CA	CB	CG	136.6°	109.4°
CA	CB	HB1	103.0°	109.5°
CA	CB	HB2	103.0°	109.5°
O	C	OXT	122.0°	120.0°
C	O	HO	117.4°	120.0°
CG	CB	HB1	102.9°	109.5°
CG	CB	HB2	102.9°	109.4°
CB	CG	CP	112.5°	109.5°
CB	CG	HG1	111.1°	109.5°
CB	CG	HG2	111.1°	109.4°
HB1	CB	HB2	105.4°	109.5°
CP	CG	HG1	111.1°	109.4°
CP	CG	HG2	111.1°	109.5°
CG	CP	P	115.8°	109.5°
CG	CP	HP1	109.9°	109.4°
CG	CP	HP2	109.9°	109.4°
HG1	CG	HG2	99.2°	109.5°
P	CP	HP1	109.9°	109.5°
P	CP	HP2	109.9°	109.5°
CP	P	O1	110.2°	109.5°
CP	P	O2	105.8°	109.5°
CP	P	O3	108.2°	109.5°
HP1	CP	HP2	100.3°	109.5°
O1	P	O2	111.3°	109.5°
O1	P	O3	107.0°	109.5°
O2	P	O3	114.3°	109.4°
P	O2	HO2	105.8°	106.8°
P	O3	HO3	108.1°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OA	CA	C	CB	179.8°	179.9°
OA	CA	C	O	179.5°	0.1°
OA	CA	C	OXT	1.1°	180.0°
OA	CA	CB	CG	143.9°	0.0°
OA	CA	CB	HB1	18.7°	120.0°
OA	CA	CB	HB2	90.8°	120.0°
CA	C	O	OXT	179.3°	179.9°
CA	C	O	HO	180.0°	180.0°
C	CA	CB	CG	35.9°	179.9°
C	CA	CB	HB1	161.1°	60.0°
C	CA	CB	HB2	89.4°	60.0°
CB	CA	C	O	0.2°	180.0°
CB	CA	C	OXT	179.1°	0.1°
CA	CB	CG	HB1	125.3°	120.0°
CA	CB	CG	HB2	125.3°	120.0°
CA	CB	HB1	HB2	107.6°	120.0°
CA	CB	CG	CP	24.2°	180.0°
CA	CB	CG	HG1	149.5°	60.0°
CA	CB	CG	HG2	101.1°	60.0°
OXT	C	O	HO	0.7°	0.1°
CG	CB	HB1	HB2	107.5°	120.0°
CB	CG	CP	HG1	125.3°	120.0°
CB	CG	CP	HG2	125.3°	120.0°
CB	CG	HG1	HG2	117.0°	120.0°
CB	CG	CP	P	100.6°	180.0°
CB	CG	CP	HP1	134.1°	60.0°
CB	CG	CP	HP2	24.6°	60.0°
HB1	CB	CG	CP	101.1°	60.0°
HB1	CB	CG	HG1	24.2°	180.0°
HB1	CB	CG	HG2	133.6°	60.0°
HB2	CB	CG	CP	149.5°	60.0°
HB2	CB	CG	HG1	85.3°	60.0°
HB2	CB	CG	HG2	24.2°	180.0°
CP	CG	HG1	HG2	117.0°	120.0°
CG	CP	P	HP1	125.2°	119.9°
CG	CP	P	HP2	125.3°	120.0°
CG	CP	HP1	HP2	115.8°	119.9°
CG	CP	P	O1	48.4°	55.0°
CG	CP	P	O2	72.1°	175.0°
CG	CP	P	O3	165.0°	65.0°
HG1	CG	CP	P	24.6°	60.0°
HG1	CG	CP	HP1	100.6°	180.0°
HG1	CG	CP	HP2	149.9°	60.0°
HG2	CG	CP	P	134.0°	60.0°
HG2	CG	CP	HP1	8.8°	60.0°
HG2	CG	CP	HP2	100.7°	180.0°
P	CP	HP1	HP2	115.7°	120.1°
CP	P	O1	O2	117.1°	120.0°
CP	P	O1	O3	117.4°	120.0°
CP	P	O2	O3	118.9°	120.0°
CP	P	O2	HO2	180.0°	180.0°
CP	P	O3	HO3	180.0°	60.0°
HP1	CP	P	O1	173.6°	65.0°
HP1	CP	P	O2	53.1°	55.1°
HP1	CP	P	O3	69.7°	175.0°
HP2	CP	P	O1	76.9°	175.0°
HP2	CP	P	O2	162.6°	65.0°
HP2	CP	P	O3	39.8°	55.0°
O1	P	O2	O3	121.4°	120.0°
O1	P	O2	HO2	60.2°	60.0°
O1	P	O3	HO3	61.3°	180.0°
O2	P	O3	HO3	62.4°	60.0°
O3	P	O2	HO2	61.1°	60.0°

247536

PDB entries from 2026-01-14

PDB statistics

PDBj update info

Contact PDBj

numon