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Summary Geometry Related PDB entries

KOP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O4	sing	1.61Å	1.58Å
P	O1P	doub	1.48Å	1.52Å
P	O2P	sing	1.61Å	1.53Å
P	O3P	sing	1.61Å	1.53Å
C1	O4	sing	1.43Å	1.38Å
C1	H1	sing	1.09Å	1.10Å
C1	H1A	sing	1.09Å	1.10Å
C1	H1B	sing	1.09Å	1.10Å
O2P	HO2P	sing	0.97Å	0.95Å
O3P	HO3P	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	P	O1P	106.9°	109.5°
O4	P	O2P	111.0°	109.5°
O4	P	O3P	111.4°	109.5°
P	O4	C1	118.9°	123.0°
O1P	P	O2P	111.3°	109.5°
O1P	P	O3P	109.5°	109.4°
O2P	P	O3P	106.8°	109.5°
P	O2P	HO2P	109.5°	114.0°
P	O3P	HO3P	109.5°	114.0°
O4	C1	H1	109.5°	109.5°
O4	C1	H1A	109.5°	109.5°
O4	C1	H1B	109.5°	109.5°
H1	C1	H1A	109.4°	109.5°
H1	C1	H1B	109.5°	109.4°
H1A	C1	H1B	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	P	O1P	O2P	121.4°	120.0°
O4	P	O1P	O3P	120.8°	120.0°
O4	P	O2P	O3P	121.6°	120.0°
P	O4	C1	H1	180.0°	60.0°
P	O4	C1	H1A	60.0°	60.0°
P	O4	C1	H1B	60.0°	180.0°
O4	P	O2P	HO2P	118.9°	60.0°
O4	P	O3P	HO3P	118.0°	179.9°
O1P	P	O2P	O3P	119.5°	120.0°
O1P	P	O4	C1	17.1°	55.0°
O1P	P	O2P	HO2P	0.0°	180.0°
O1P	P	O3P	HO3P	0.0°	60.1°
O2P	P	O4	C1	138.6°	65.0°
O2P	P	O3P	HO3P	120.6°	59.9°
O3P	P	O4	C1	102.5°	175.0°
O3P	P	O2P	HO2P	119.5°	60.0°
O4	C1	H1	H1A	120.0°	120.1°
O4	C1	H1	H1B	120.1°	120.0°
O4	C1	H1A	H1B	120.0°	120.0°
H1	C1	H1A	H1B	119.9°	119.9°

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PDB entries from 2024-08-07

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