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KMQ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C7sing1.51Å1.50Å
C1C21doub1.31Å1.32Å
C3C21sing1.51Å1.48Å
C3O2Dsing1.43Å1.45Å
O2DC2Dsing1.43Å1.42Å
O3DC3Dsing1.43Å1.43Å
C4DC3Dsing1.54Å1.51Å
C4DC5Dsing1.53Å1.52Å
C4DO4Dsing1.44Å1.43Å
C2DC3Dsing1.55Å1.52Å
C2DC1Dsing1.55Å1.51Å
C5DO5Dsing1.43Å1.42Å
O4DC1Dsing1.44Å1.43Å
O1DC1Dsing1.43Å1.43Å
O5DPBsing1.61Å1.60Å
O1BPBdoub1.48Å1.51Å
PBO2Bsing1.61Å1.51Å
PBO3Asing1.61Å1.61Å
O2APAdoub1.48Å1.51Å
O3APAsing1.61Å1.61Å
PAO1Asing1.61Å1.51Å
PAO5'sing1.61Å1.60Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.52Å
C4'C3'sing1.55Å1.52Å
C4'O4'sing1.44Å1.43Å
O3'C3'sing1.43Å1.43Å
C3'C2'sing1.54Å1.52Å
O4'C1'sing1.44Å1.42Å
C1'C2'sing1.54Å1.51Å
C1'N9sing1.47Å1.48Å
C2'O2'sing1.43Å1.43Å
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
N3C4doub1.33Å1.35ÅAromatic
N3C2sing1.32Å1.34ÅAromatic
C8N7doub1.30Å1.36ÅAromatic
C4C5sing1.41Å1.47ÅAromatic
C2N1doub1.32Å1.35ÅAromatic
N7C5sing1.35Å1.35ÅAromatic
C5C6doub1.40Å1.48ÅAromatic
N1C6sing1.33Å1.35ÅAromatic
C6N6sing1.38Å1.35Å
C3H1sing1.09Å1.10Å
C3H2sing1.09Å1.10Å
C21H3sing1.08Å1.08Å
C1H4sing1.08Å1.08Å
C7H5sing1.09Å1.10Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C2DH8sing1.09Å1.10Å
C3DH9sing1.09Å1.10Å
O3DH10sing0.97Å0.95Å
C1DH11sing1.09Å1.10Å
O1DH12sing0.97Å0.95Å
C4DH13sing1.09Å1.10Å
C5DH14sing1.09Å1.10Å
C5DH15sing1.09Å1.10Å
O2BH16sing0.97Å0.95Å
O1AH17sing0.97Å0.95Å
C5'H18sing1.09Å1.10Å
C5'H19sing1.09Å1.10Å
C4'H20sing1.09Å1.10Å
C1'H21sing1.09Å1.10Å
C2'H22sing1.09Å1.10Å
O2'H23sing0.97Å0.95Å
C3'H24sing1.09Å1.10Å
O3'H25sing0.97Å0.95Å
C8H26sing1.08Å1.08Å
N6H27sing0.97Å1.00Å
N6H28sing0.97Å1.00Å
C2H29sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C7C1C21118.6°120.0°
C7C1H4120.7°120.0°
C1C7H5109.5°109.5°
C1C7H6109.4°109.5°
C1C7H7109.5°109.4°
C1C21C3126.9°119.9°
C1C21H3116.5°120.0°
C21C1H4120.7°120.1°
C21C3O2D117.2°109.4°
C21C3H1107.5°109.5°
C21C3H2107.5°109.5°
C3C21H3116.6°120.0°
C3O2DC2D116.0°114.0°
O2DC3H1107.5°109.4°
O2DC3H2107.5°109.5°
O2DC2DC3D112.7°110.9°
O2DC2DC1D102.0°110.9°
O2DC2DH8114.7°110.7°
O3DC3DC4D112.4°110.6°
O3DC3DC2D115.7°110.5°
O3DC3DH9109.9°110.4°
C3DO3DH10109.5°114.0°
C3DC4DC5D112.4°109.8°
C3DC4DO4D104.3°107.3°
C4DC3DC2D100.9°104.2°
C4DC3DH9108.8°110.5°
C3DC4DH13109.6°109.9°
C5DC4DO4D110.1°109.9°
C4DC5DO5D106.9°109.5°
C5DC4DH13109.6°109.9°
C4DC5DH14110.1°109.5°
C4DC5DH15110.1°109.5°
C4DO4DC1D109.7°107.0°
O4DC4DH13110.8°110.0°
C3DC2DC1D99.4°102.1°
C3DC2DH8113.2°110.9°
C2DC3DH9108.8°110.5°
C2DC1DO4D104.2°103.5°
C2DC1DO1D110.0°110.6°
C1DC2DH8113.3°110.9°
C2DC1DH11110.1°110.7°
C5DO5DPB121.1°123.0°
O5DC5DH14110.1°109.5°
O5DC5DH15110.1°109.4°
O4DC1DO1D109.8°110.7°
O4DC1DH11111.2°110.7°
O1DC1DH11111.3°110.5°
C1DO1DH12109.5°114.0°
O5DPBO1B110.0°109.5°
O5DPBO2B108.2°109.5°
O5DPBO3A107.5°109.5°
O1BPBO2B111.8°109.5°
O1BPBO3A109.2°109.4°
O2BPBO3A110.1°109.5°
PBO2BH16109.5°114.0°
PBO3APA121.9°134.0°
O2APAO3A110.2°109.5°
O2APAO1A111.8°109.5°
O2APAO5'109.1°109.4°
O3APAO1A108.0°109.5°
O3APAO5'108.1°109.5°
O1APAO5'109.5°109.5°
PAO1AH17109.5°114.0°
PAO5'C5'118.6°123.0°
O5'C5'C4'108.9°109.5°
O5'C5'H18109.6°109.5°
O5'C5'H19109.6°109.4°
C5'C4'C3'111.3°110.4°
C5'C4'O4'108.9°110.4°
C4'C5'H18109.6°109.5°
C4'C5'H19109.6°109.5°
C5'C4'H20109.4°110.4°
C3'C4'O4'107.2°104.8°
C4'C3'O3'108.5°110.5°
C4'C3'C2'105.2°104.1°
C3'C4'H20109.3°110.3°
C4'C3'H24110.5°110.5°
C4'O4'C1'109.7°105.3°
O4'C4'H20110.7°110.4°
O3'C3'C2'109.9°110.5°
O3'C3'H24111.9°110.6°
C3'O3'H25109.5°114.0°
C3'C2'C1'103.7°104.1°
C3'C2'O2'111.0°110.5°
C3'C2'H22110.3°110.6°
C2'C3'H24110.6°110.5°
O4'C1'C2'105.9°104.8°
O4'C1'N9109.7°110.4°
O4'C1'H21110.6°110.4°
C2'C1'N9111.5°110.4°
C1'C2'O2'109.4°110.5°
C2'C1'H21109.3°110.3°
C1'C2'H22110.4°110.5°
C1'N9C8127.4°126.3°
C1'N9C4123.7°126.3°
N9C1'H21109.8°110.4°
O2'C2'H22111.6°110.4°
C2'O2'H23109.5°114.0°
C8N9C4108.9°107.4°
N9C8N7110.8°110.0°
N9C8H26124.6°125.0°
N9C4N3134.2°134.9°
N9C4C5106.2°106.0°
C4N3C2120.5°120.6°
N3C4C5119.6°119.1°
N3C2N1123.4°122.5°
N3C2H29118.3°118.7°
C8N7C5107.3°109.5°
N7C8H26124.6°125.1°
C4C5N7106.8°107.1°
C4C5C6116.7°118.1°
C2N1C6122.2°121.2°
N1C2H29118.3°118.8°
N7C5C6136.5°134.8°
C5C6N1117.6°118.5°
C5C6N6121.1°120.8°
N1C6N6121.2°120.8°
C6N6H27109.5°120.0°
C6N6H28109.5°120.0°
H1C3H2109.5°109.5°
H5C7H6109.5°109.5°
H5C7H7109.5°109.5°
H6C7H7109.5°109.5°
H14C5DH15109.5°109.5°
H18C5'H19109.5°109.4°
H27N6H28109.5°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C7C1C21H4180.0°180.0°
C7C1C21C3179.8°180.0°
C7C1C21H30.2°0.0°
C1C7H5H6120.0°120.0°
C1C7H5H7120.0°120.0°
C1C7H6H7120.0°120.0°
C1C21C3H3180.0°180.0°
C1C21C3O2D179.6°135.0°
C1C21C3H159.3°105.0°
C1C21C3H258.5°15.0°
C21C1C7H5180.0°60.0°
C21C1C7H660.0°60.0°
C21C1C7H760.0°180.0°
C21C3O2DH1121.1°119.9°
C21C3O2DH2121.1°120.1°
C21C3O2DC2D42.3°180.0°
C21C3H1H2116.5°120.1°
C3C21C1H40.2°0.0°
C3O2DC2DC3D65.5°150.0°
C3O2DC2DC1D171.2°97.2°
O2DC3H1H2116.5°120.0°
O2DC3C21H30.4°45.0°
C3O2DC2DH865.9°26.4°
O2DC2DC3DO3D59.2°20.3°
O2DC2DC3DC4D62.3°139.1°
O2DC2DC3DC1D107.3°118.2°
O2DC2DC3DH8132.2°123.5°
O2DC2DC1DH8123.9°123.5°
O2DC2DC1DO4D75.9°155.2°
O2DC2DC1DO1D41.7°36.6°
C2DO2DC3H1163.4°60.0°
C2DO2DC3H278.8°60.0°
O2DC2DC3DH9176.7°102.2°
O2DC2DC1DH11164.7°86.2°
O3DC3DC4DC2D123.8°118.7°
O3DC3DC4DH9121.9°122.6°
O3DC3DC4DC5D82.3°119.8°
O3DC3DC4DO4D158.5°120.8°
O3DC3DC2DH9124.2°122.5°
O3DC3DC2DC1D166.5°97.9°
O3DC3DC2DH873.0°143.8°
O3DC3DC4DH1339.8°1.1°
C3DC4DC5DO4D115.8°117.8°
C3DC4DC5DH13122.1°121.0°
C3DC4DO4DH13117.9°119.5°
C4DC3DC2DH9114.3°118.7°
C4DC3DC2DC1D45.0°20.8°
C3DC4DC5DO5D99.9°175.0°
C3DC4DO4DC1D10.0°26.5°
C4DC3DC2DH8165.5°97.4°
C4DC3DO3DH10180.0°65.2°
C3DC4DC5DH14140.5°55.0°
C3DC4DC5DH1519.7°65.0°
C5DC4DO4DH13121.3°121.1°
C5DC4DC3DC2D153.9°121.5°
C4DC5DO5DH14119.6°120.0°
C4DC5DO5DH15119.6°120.0°
C5DC4DO4DC1D130.8°145.9°
C4DC5DO5DPB140.3°180.0°
C5DC4DC3DH939.6°2.8°
C4DC5DH14H15121.2°120.1°
O4DC4DC3DC2D34.7°2.1°
C4DO4DC1DC2D19.2°40.0°
O4DC4DC5DO5D16.0°67.2°
C4DO4DC1DO1D136.9°78.5°
O4DC4DC3DH979.6°116.6°
C4DO4DC1DH1199.5°158.6°
O4DC4DC5DH14103.6°172.8°
O4DC4DC5DH15135.6°52.8°
C3DC2DC1DH8120.4°118.2°
C3DC2DC1DO4D39.8°37.0°
C3DC2DC1DO1D157.5°81.6°
C2DC3DO3DH1064.9°180.0°
C3DC2DC1DH1179.5°155.6°
C2DC3DC4DH1384.0°117.6°
C2DC1DO4DO1D117.7°118.6°
C2DC1DO4DH11118.6°118.6°
C2DC1DO1DH11122.3°122.9°
C1DC2DC3DH969.3°139.6°
C2DC1DO1DH12180.0°180.0°
C5DO5DPBO1B16.3°55.0°
C5DO5DPBO2B106.1°65.0°
C5DO5DPBO3A135.1°175.0°
O5DC5DC4DH13138.0°54.0°
O5DC5DH14H15121.2°120.0°
O4DC1DO1DH11123.6°123.0°
O4DC1DC2DH8160.2°81.2°
O4DC1DO1DH1265.9°65.9°
C1DO4DC4DH13107.9°93.0°
O1DC1DC2DH882.2°160.1°
O5DPBO1BO2B120.2°120.0°
O5DPBO1BO3A117.7°120.0°
O5DPBO2BO3A117.2°120.0°
O5DPBO3APA81.6°160.0°
PBO5DC5DH14100.1°60.0°
PBO5DC5DH1520.7°60.0°
O5DPBO2BH16121.3°60.0°
O1BPBO2BO3A121.6°120.0°
O1BPBO3APA159.2°40.0°
O1BPBO2BH160.0°180.0°
O2BPBO3APA36.0°80.0°
PBO3APAO2A43.0°45.0°
PBO3APAO1A165.5°75.0°
PBO3APAO5'76.1°165.0°
O3APBO2BH16121.6°60.0°
O2APAO3AO1A122.4°120.0°
O2APAO3AO5'119.2°120.0°
O2APAO1AO5'121.1°120.0°
O2APAO5'C5'178.7°55.0°
O2APAO1AH170.0°180.0°
O3APAO1AO5'117.5°120.0°
O3APAO5'C5'58.8°175.0°
O3APAO1AH17121.4°60.0°
O1APAO5'C5'58.6°64.9°
PAO5'C5'C4'174.8°180.0°
O5'PAO1AH17121.1°60.0°
PAO5'C5'H1854.8°59.9°
PAO5'C5'H1965.4°60.0°
O5'C5'C4'H18119.9°120.1°
O5'C5'C4'H19119.9°119.9°
O5'C5'C4'C3'64.2°175.0°
O5'C5'C4'O4'177.8°69.6°
O5'C5'H18H19120.3°119.9°
O5'C5'C4'H2056.7°52.7°
C5'C4'C3'O4'119.0°118.9°
C5'C4'C3'H20121.0°122.3°
C5'C4'O4'H20120.3°122.3°
C5'C4'C3'O3'128.7°98.6°
C5'C4'C3'C2'113.7°142.8°
C5'C4'O4'C1'133.8°159.3°
C4'C5'H18H19120.3°120.0°
C5'C4'C3'H245.6°24.1°
C3'C4'O4'H20119.2°118.8°
C4'C3'O3'C2'114.5°114.6°
C4'C3'O3'H24122.2°122.7°
C4'C3'C2'H24119.3°118.6°
C3'C4'O4'C1'13.3°40.4°
C4'C3'C2'C1'20.3°0.0°
C4'C3'C2'O2'137.7°118.7°
C3'C4'C5'H18175.9°65.0°
C3'C4'C5'H1955.7°55.0°
C4'C3'C2'H2297.9°118.7°
C4'C3'O3'H25180.0°180.0°
O4'C4'C3'O3'112.3°142.6°
O4'C4'C3'C2'5.3°23.9°
C4'O4'C1'C2'26.5°40.4°
C4'O4'C1'N9147.0°159.3°
O4'C4'C5'H1857.9°50.4°
O4'C4'C5'H1962.3°170.4°
C4'O4'C1'H2191.8°78.4°
O4'C4'C3'H24124.6°94.7°
O3'C3'C2'H24124.1°122.7°
O3'C3'C2'C1'96.3°118.7°
O3'C3'C2'O2'21.1°0.0°
O3'C3'C4'H207.7°23.7°
O3'C3'C2'H22145.5°122.6°
C3'C2'C1'O4'28.6°23.9°
C3'C2'C1'O2'118.6°118.7°
C3'C2'C1'H22118.2°118.8°
C3'C2'C1'N9147.9°142.8°
C3'C2'O2'H22123.6°122.7°
C2'C3'C4'H20125.3°94.9°
C3'C2'C1'H2190.6°94.9°
C3'C2'O2'H23180.0°65.4°
C2'C3'O3'H2565.5°65.4°
O4'C1'C2'N9119.3°118.9°
O4'C1'C2'H21119.2°118.8°
O4'C1'N9H21121.7°122.3°
O4'C1'C2'O2'147.2°142.6°
O4'C1'N9C883.5°23.7°
O4'C1'N9C495.3°156.7°
C1'O4'C4'H20105.9°78.4°
O4'C1'C2'H2289.6°94.9°
C2'C1'N9H21121.2°122.3°
C1'C2'O2'H22122.5°122.6°
C2'C1'N9C833.5°91.8°
C2'C1'N9C4147.6°87.8°
C1'C2'O2'H2366.1°180.0°
C1'C2'C3'H24139.6°118.6°
N9C1'C2'O2'93.5°98.5°
C1'N9C8C4179.0°179.7°
C1'N9C4N30.9°0.1°
C1'N9C8N7179.6°180.0°
C1'N9C4C5179.6°179.9°
N9C1'C2'H2229.7°24.0°
C1'N9C8H260.4°0.1°
O2'C2'C1'H2128.0°23.8°
O2'C2'C3'H24102.9°122.7°
C8N9C4N3179.9°179.7°
N9C8N7H26180.0°180.0°
C8N9C4C50.6°0.4°
N9C8N7C50.4°0.1°
C8N9C1'H21154.8°146.0°
N9C4N3C5179.4°179.9°
N9C4N3C2179.5°179.2°
C4N9C8N70.6°0.3°
N9C4C5N70.3°0.4°
N9C4C5C6179.6°179.8°
C4N9C1'H2126.4°34.5°
C4N9C8H26179.4°179.7°
C4N3C2N10.1°1.0°
N3C4C5N7179.9°179.7°
N3C4C5C60.1°0.1°
C4N3C2H29179.9°179.7°
C2N3C4C50.0°0.7°
N3C2N1H29180.0°179.3°
N3C2N1C60.2°0.6°
C8N7C5C40.0°0.2°
C8N7C5C6180.0°180.0°
C4C5N7C6180.0°179.8°
C4C5C6N10.0°0.2°
C4C5C6N6179.9°179.7°
C2N1C6C50.1°0.0°
C2N1C6N6179.9°180.0°
N7C5C6N1180.0°180.0°
N7C5C6N60.1°0.0°
C5N7C8H26179.6°180.0°
C5C6N1N6179.9°180.0°
C5C6N6H27179.9°0.0°
C5C6N6H2859.9°179.9°
N1C6N6H270.0°180.0°
N1C6N6H28120.0°0.0°
C6N1C2H29179.8°180.0°
C6N6H27H28120.0°179.9°
H1C3C21H3120.7°75.0°
H2C3C21H3121.5°165.0°
H3C21C1H4179.8°180.0°
H4C1C7H50.0°120.0°
H4C1C7H6120.0°120.0°
H4C1C7H7120.0°0.0°
H5C7H6H7120.0°120.0°
H8C2DC3DH951.1°21.3°
H8C2DC1DH1140.9°37.3°
H9C3DO3DH1058.7°57.4°
H9C3DC4DH13161.7°123.8°
H11C1DO1DH1257.7°57.1°
H13C4DC5DH1418.4°66.0°
H13C4DC5DH15102.4°174.0°
H18C5'C4'H2063.2°172.8°
H19C5'C4'H20176.6°67.2°
H20C4'C3'H24115.3°146.4°
H21C1'C2'H22151.2°146.3°
H22C2'O2'H2356.4°57.4°
H22C2'C3'H2421.4°0.1°
H24C3'O3'H2557.8°57.3°

224931

PDB entries from 2024-09-11

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