Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

KM5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7N8doub1.32Å1.38ÅAromatic
C7C6sing1.39Å1.42ÅAromatic
N8C8Asing1.33Å1.35ÅAromatic
C9C6sing1.51Å1.44Å
C9N10sing1.47Å1.48Å
C6N5doub1.32Å1.37ÅAromatic
C8AN1doub1.34Å1.37ÅAromatic
C8AC4Asing1.42Å1.40ÅAromatic
N1C2sing1.32Å1.34ÅAromatic
N5C4Asing1.33Å1.36ÅAromatic
CBHCAPsing1.53Å1.52Å
C4AC4doub1.46Å1.42ÅAromatic
CAPN10sing1.47Å1.49Å
C2N2sing1.38Å1.31Å
C2N3doub1.33Å1.35ÅAromatic
N10CASsing1.39Å1.38Å
C4N3sing1.33Å1.36ÅAromatic
C4N4sing1.38Å1.33Å
CASCAOdoub1.39Å1.40ÅAromatic
CASCARsing1.39Å1.42ÅAromatic
CAOCATsing1.38Å1.39ÅAromatic
CARCAQdoub1.38Å1.41ÅAromatic
CATCAUdoub1.40Å1.38ÅAromatic
CAQCAUsing1.40Å1.41ÅAromatic
CAUCBBsing1.48Å1.42Å
CBBNAWsing1.35Å1.35Å
CBBOBCdoub1.22Å1.23Å
CAXNAWsing1.47Å1.49Å
CAXCAYsing1.54Å1.45Å
NAWCAVsing1.47Å1.48Å
CAZCAYsing1.53Å1.46Å
CAZCBAsing1.53Å1.52Å
CAZCBDsing1.51Å1.53Å
OBECBDsing1.34Å1.36Å
OBECBGsing1.45Å1.43Å
CBACAVsing1.53Å1.52Å
CBDOBFdoub1.21Å1.23Å
CAOH1sing1.08Å1.08Å
CATH2sing1.08Å1.08Å
CAVH3sing1.09Å1.10Å
CAVH4sing1.09Å1.10Å
CBGH5sing1.09Å1.10Å
CBGH6sing1.09Å1.10Å
CBGH7sing1.09Å1.10Å
CAZH8sing1.09Å1.10Å
CBAH9sing1.09Å1.10Å
CBAH10sing1.09Å1.10Å
CAYH11sing1.09Å1.10Å
CAYH12sing1.09Å1.10Å
CAXH13sing1.09Å1.10Å
CAXH14sing1.09Å1.10Å
CAQH15sing1.08Å1.08Å
CARH16sing1.08Å1.08Å
CAPH17sing1.09Å1.10Å
CAPH18sing1.09Å1.10Å
CBHH19sing1.09Å1.10Å
CBHH20sing1.09Å1.10Å
CBHH21sing1.09Å1.10Å
C9H22sing1.09Å1.10Å
C9H23sing1.09Å1.10Å
N4H24sing0.97Å1.00Å
N4H25sing0.97Å1.00Å
N2H26sing0.97Å1.00Å
N2H27sing0.97Å1.00Å
C7H28sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N8C7C6120.0°120.8°
C7N8C8A119.0°119.6°
N8C7H28120.0°119.7°
C7C6C9120.3°119.7°
C7C6N5119.6°120.6°
C6C7H28120.0°119.6°
N8C8AN1119.9°122.0°
N8C8AC4A121.5°119.4°
C6C9N10113.1°109.5°
C9C6N5120.1°119.7°
C6C9H22108.5°109.4°
C6C9H23108.6°109.4°
C9N10CAP113.9°120.0°
C9N10CAS122.0°120.0°
N10C9H22108.6°109.5°
N10C9H23108.6°109.5°
C6N5C4A120.0°119.5°
N1C8AC4A118.6°118.6°
C8AN1C2122.6°121.1°
C8AC4AN5119.9°120.1°
C8AC4AC4117.6°117.8°
N1C2N2121.3°118.3°
N1C2N3120.2°123.4°
N5C4AC4122.4°122.1°
CBHCAPN10111.1°109.5°
CBHCAPH17109.1°109.5°
CBHCAPH18109.1°109.5°
CAPCBHH19109.5°109.5°
CAPCBHH20109.5°109.5°
CAPCBHH21109.5°109.5°
C4AC4N3120.0°117.7°
C4AC4N4118.6°121.2°
CAPN10CAS124.1°120.0°
N10CAPH17109.1°109.5°
N10CAPH18109.1°109.4°
N2C2N3118.4°118.3°
C2N2H26109.5°120.0°
C2N2H27109.5°120.0°
C2N3C4120.9°121.3°
N10CASCAO120.7°119.9°
N10CASCAR124.1°120.0°
N3C4N4121.3°121.1°
C4N4H24109.5°120.0°
C4N4H25109.5°120.0°
CAOCASCAR115.2°120.1°
CASCAOCAT123.4°120.0°
CASCAOH1118.3°120.0°
CASCARCAQ121.0°120.1°
CASCARH16119.5°119.9°
CAOCATCAU121.4°120.0°
CATCAOH1118.3°120.0°
CAOCATH2119.3°120.0°
CARCAQCAU122.1°119.9°
CARCAQH15118.9°120.0°
CAQCARH16119.5°120.0°
CATCAUCAQ116.9°119.8°
CATCAUCBB120.3°120.1°
CAUCATH2119.3°120.0°
CAQCAUCBB122.9°120.1°
CAUCAQH15118.9°120.1°
CAUCBBNAW122.7°120.0°
CAUCBBOBC117.5°120.0°
NAWCBBOBC119.7°120.1°
CBBNAWCAX126.6°120.7°
CBBNAWCAV116.4°120.6°
NAWCAXCAY107.3°108.7°
CAXNAWCAV116.2°118.7°
NAWCAXH13110.0°109.5°
NAWCAXH14110.0°109.6°
CAXCAYCAZ109.2°109.4°
CAXCAYH11109.5°109.5°
CAXCAYH12109.6°109.6°
CAYCAXH13110.0°109.8°
CAYCAXH14110.0°109.6°
NAWCAVCBA110.9°108.9°
NAWCAVH3109.1°109.6°
NAWCAVH4109.1°109.5°
CAYCAZCBA110.1°109.5°
CAYCAZCBD106.0°109.5°
CAYCAZH8111.2°109.4°
CAZCAYH11109.6°109.5°
CAZCAYH12109.6°109.5°
CBACAZCBD108.9°109.5°
CAZCBACAV110.4°109.3°
CBACAZH8110.3°109.4°
CAZCBAH9109.2°109.5°
CAZCBAH10109.3°109.6°
CAZCBDOBE114.6°120.0°
CAZCBDOBF121.0°120.0°
CBDCAZH8110.2°109.5°
CBDOBECBG110.0°117.1°
OBECBDOBF124.3°119.9°
OBECBGH5109.5°109.5°
OBECBGH6109.5°109.6°
OBECBGH7109.5°109.5°
CBACAVH3109.1°109.6°
CBACAVH4109.1°109.6°
CAVCBAH9109.2°109.5°
CAVCBAH10109.2°109.5°
H3CAVH4109.5°109.6°
H5CBGH6109.4°109.5°
H5CBGH7109.5°109.4°
H6CBGH7109.5°109.4°
H9CBAH10109.4°109.6°
H11CAYH12109.4°109.5°
H13CAXH14109.5°109.7°
H17CAPH18109.4°109.5°
H19CBHH20109.4°109.4°
H19CBHH21109.5°109.5°
H20CBHH21109.5°109.5°
H22C9H23109.5°109.5°
H24N4H25109.5°120.0°
H26N2H27109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N8C7C6H28180.0°179.4°
N8C7C6C9179.3°179.7°
N8C7C6N50.1°0.6°
C7N8C8AN1179.7°179.8°
C7N8C8AC4A1.0°0.2°
C6C7N8C8A0.6°0.5°
C7C6C9N5179.4°179.7°
C7C6C9N10137.8°94.7°
C7C6N5C4A2.0°0.3°
C7C6C9H22101.7°25.3°
C7C6C9H2317.2°145.3°
N8C8AN1C4A178.8°180.0°
N8C8AN1C2178.3°179.9°
N8C8AC4AN53.1°0.0°
N8C8AC4AC4178.7°180.0°
C8AN8C7H28179.4°180.0°
C6C9N10H22120.5°119.9°
C6C9N10H23120.6°120.0°
C9C6N5C4A178.6°180.0°
C6C9N10CAP101.4°90.0°
C6C9N10CAS76.7°90.0°
C6C9H22H23118.3°119.9°
C9C6C7H280.8°0.3°
N10C9C6N541.6°85.0°
C9N10CAPCBH101.9°90.0°
C9N10CAPCAS178.1°180.0°
C9N10CASCAO0.3°180.0°
C9N10CASCAR177.4°0.0°
C9N10CAPH1718.3°30.0°
C9N10CAPH18137.8°150.1°
N10C9H22H23118.3°120.1°
C6N5C4AC8A3.6°0.0°
C6N5C4AC4178.9°180.0°
N5C6C9H2278.9°155.0°
N5C6C9H23162.2°35.1°
N5C6C7H28179.9°180.0°
N1C8AC4AN5178.1°180.0°
N1C8AC4AC42.6°0.0°
C8AN1C2N2179.4°180.0°
C8AN1C2N33.3°0.1°
C4AC8AN1C20.6°0.1°
C8AC4AN5C4175.3°180.0°
C8AC4AC4N33.0°0.0°
C8AC4AC4N4179.2°180.0°
N1C2N2N3176.2°179.9°
N1C2N3C42.9°0.0°
N1C2N2H260.0°179.9°
N1C2N2H27120.0°0.1°
N5C4AC4N3178.5°179.9°
N5C4AC4N43.8°0.0°
CBHCAPN10H17120.3°120.0°
CBHCAPN10H18120.3°119.9°
CBHCAPN10CAS80.0°90.0°
CBHCAPH17H18119.3°120.1°
CAPCBHH19H20120.0°120.0°
CAPCBHH19H21120.0°120.0°
CAPCBHH20H21120.0°120.0°
C4AC4N3C20.3°0.0°
C4AC4N3N4177.7°179.9°
C4AC4N4H24177.7°0.1°
C4AC4N4H2557.7°180.0°
CAPN10CASCAO178.2°0.0°
CAPN10CASCAR0.5°180.0°
N10CAPH17H18119.3°119.9°
N10CAPCBHH19180.0°60.0°
N10CAPCBHH2060.0°60.0°
N10CAPCBHH2160.0°180.0°
CAPN10C9H2219.1°29.9°
CAPN10C9H23138.0°150.0°
N2C2N3C4179.0°179.9°
C2N2H26H27120.0°180.0°
C2N3C4N4178.1°180.0°
N3C2N2H26176.2°0.0°
N3C2N2H2763.8°180.0°
N10CASCAOCAR177.9°180.0°
N10CASCAOCAT179.0°180.0°
N10CASCARCAQ178.3°179.5°
N10CASCAOH11.0°0.3°
N10CASCARH161.8°0.0°
CASN10CAPH17159.7°150.0°
CASN10CAPH1840.3°29.9°
CASN10C9H22162.8°150.0°
CASN10C9H2343.8°30.0°
N3C4N4H240.0°180.0°
N3C4N4H25120.0°0.0°
C4N4H24H25120.0°180.0°
CASCAOCATH1180.0°179.7°
CAOCASCARCAQ0.4°0.5°
CASCAOCATCAU1.7°0.3°
CASCAOCATH2178.3°179.7°
CAOCASCARH16179.6°180.0°
CARCASCAOCAT1.1°0.1°
CASCARCAQH16180.0°179.5°
CASCARCAQCAU0.4°0.7°
CARCASCAOH1178.9°179.7°
CASCARCAQH15179.6°179.8°
CAOCATCAUH2180.0°180.0°
CAOCATCAUCAQ1.5°0.1°
CAOCATCAUCBB179.7°180.0°
CARCAQCAUCAT0.9°0.5°
CARCAQCAUH15180.0°179.5°
CARCAQCAUCBB179.6°179.5°
CATCAUCAQCBB178.7°180.0°
CATCAUCBBNAW48.8°41.6°
CATCAUCBBOBC127.1°138.4°
CAUCATCAOH1178.3°180.0°
CATCAUCAQH15179.1°180.0°
CAQCAUCBBNAW132.5°138.4°
CAQCAUCBBOBC51.6°41.6°
CAQCAUCATH2178.5°180.0°
CAUCAQCARH16179.6°179.8°
CAUCBBNAWOBC175.9°180.0°
CAUCBBNAWCAX10.0°5.8°
CAUCBBNAWCAV179.5°174.2°
CBBCAUCATH20.3°0.0°
CBBCAUCAQH150.4°0.0°
CBBNAWCAXCAV169.5°180.0°
CBBNAWCAXCAY169.5°126.5°
CBBNAWCAVCBA138.4°126.3°
CBBNAWCAVH3101.4°113.8°
CBBNAWCAVH418.2°6.5°
CBBNAWCAXH1370.8°6.6°
CBBNAWCAXH1449.9°113.7°
OBCCBBNAWCAX174.1°174.1°
OBCCBBNAWCAV4.6°5.9°
NAWCAXCAYH13119.6°119.8°
NAWCAXCAYH14119.7°119.7°
NAWCAXCAYCAZ60.4°54.6°
CAXNAWCAVCBA51.0°53.7°
CAXNAWCAVH369.2°66.2°
CAXNAWCAVH4171.2°173.5°
NAWCAXCAYH11179.6°65.4°
NAWCAXCAYH1259.6°174.5°
NAWCAXH13H14121.0°120.3°
CAYCAXNAWCAV0.0°53.5°
CAXCAYCAZH11120.0°119.9°
CAXCAYCAZH12120.0°120.0°
CAXCAYCAZCBA70.1°61.3°
CAXCAYCAZCBD172.3°178.6°
CAXCAYCAZH852.5°58.6°
CAXCAYH11H12120.1°120.1°
CAYCAXH13H14121.0°120.5°
NAWCAVCBACAZ41.0°54.7°
NAWCAVCBAH3120.2°119.9°
NAWCAVCBAH4120.2°119.8°
NAWCAVH3H4119.3°120.2°
NAWCAVCBAH979.2°65.2°
NAWCAVCBAH10161.1°174.7°
CAVNAWCAXH13119.7°173.4°
CAVNAWCAXH14119.6°66.3°
CAYCAZCBACBD115.8°120.0°
CAYCAZCBAH8123.1°120.0°
CAYCAZCBDH8120.5°119.9°
CAYCAZCBDOBE75.1°180.0°
CAYCAZCBACAV15.2°61.4°
CAYCAZCBDOBF102.6°0.0°
CAYCAZCBAH9135.4°58.5°
CAYCAZCBAH10104.9°178.7°
CAZCAYH11H12120.1°120.0°
CAZCAYCAXH1359.3°174.3°
CAZCAYCAXH14180.0°65.2°
CBACAZCBDH8121.1°120.0°
CBACAZCBDOBE166.5°59.9°
CAZCBACAVH9120.2°119.9°
CAZCBACAVH10120.2°120.0°
CBACAZCBDOBF15.8°120.1°
CAZCBACAVH379.3°65.2°
CAZCBACAVH4161.2°174.5°
CAZCBAH9H10119.6°120.2°
CBACAZCAYH11170.0°58.6°
CBACAZCAYH1249.9°178.6°
CAZCBDOBEOBF177.6°180.0°
CAZCBDOBECBG177.9°180.0°
CBDCAZCBACAV131.0°178.6°
CBDCAZCBAH9108.8°61.5°
CBDCAZCBAH1010.9°58.7°
CBDCAZCAYH1152.3°61.5°
CBDCAZCAYH1267.7°58.6°
CBDOBECBGH5180.0°59.9°
CBDOBECBGH660.0°180.0°
CBDOBECBGH760.0°60.0°
OBECBDCAZH845.4°60.1°
CBGOBECBDOBF0.3°0.0°
OBECBGH5H6120.0°120.1°
OBECBGH5H7120.0°120.0°
OBECBGH6H7120.0°120.0°
CBACAVH3H4119.3°120.3°
CAVCBACAZH8107.9°58.6°
CAVCBAH9H10119.5°120.0°
OBFCBDCAZH8137.0°119.9°
H1CAOCATH21.7°0.1°
H3CAVCBAH9160.5°174.9°
H3CAVCBAH1040.9°54.8°
H4CAVCBAH941.0°54.6°
H4CAVCBAH1078.6°65.5°
H5CBGH6H7120.0°119.9°
H8CAZCBAH912.3°178.5°
H8CAZCBAH10132.0°61.3°
H8CAZCAYH1167.5°178.6°
H8CAZCAYH12172.5°61.4°
H11CAYCAXH1360.7°54.4°
H11CAYCAXH1460.0°174.9°
H12CAYCAXH13179.3°65.7°
H12CAYCAXH1460.0°54.8°
H15CAQCARH160.4°0.3°
H17CAPCBHH1959.7°180.0°
H17CAPCBHH2060.2°60.0°
H17CAPCBHH21179.8°60.0°
H18CAPCBHH1959.8°59.9°
H18CAPCBHH20179.7°179.9°
H18CAPCBHH2160.3°60.1°
H19CBHH20H21120.0°120.0°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon