KHB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O | C | doub | 1.21Å | 1.26Å | |
N | CA | sing | 1.47Å | 1.41Å | |
CB | CA | sing | 1.53Å | 1.52Å | |
CB | CG | sing | 1.53Å | 1.53Å | |
C | CA | sing | 1.51Å | 1.52Å | |
CD | CG | sing | 1.53Å | 1.54Å | |
CD | CE | sing | 1.53Å | 1.53Å | |
NZ | CE | sing | 1.46Å | 1.45Å | |
NZ | C1 | sing | 1.35Å | 1.43Å | |
C2 | C1 | sing | 1.51Å | 1.52Å | |
C2 | C3 | sing | 1.53Å | 1.51Å | |
C1 | O1 | doub | 1.21Å | 1.22Å | |
C4 | C3 | sing | 1.53Å | 1.51Å | |
C3 | O2 | sing | 1.43Å | 1.40Å | |
C | OXT | sing | 1.34Å | 1.33Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | HB2 | sing | 1.09Å | 1.10Å | |
CB | HB3 | sing | 1.09Å | 1.10Å | |
CG | HG2 | sing | 1.09Å | 1.10Å | |
CG | HG3 | sing | 1.09Å | 1.10Å | |
CD | HD2 | sing | 1.09Å | 1.10Å | |
CD | HD3 | sing | 1.09Å | 1.10Å | |
CE | HE2 | sing | 1.09Å | 1.10Å | |
CE | HE3 | sing | 1.09Å | 1.10Å | |
C2 | H22 | sing | 1.09Å | 1.10Å | |
C2 | H23 | sing | 1.09Å | 1.10Å | |
C3 | H32 | sing | 1.09Å | 1.10Å | |
C4 | H41 | sing | 1.09Å | 1.10Å | |
C4 | H42 | sing | 1.09Å | 1.10Å | |
C4 | H43 | sing | 1.09Å | 1.10Å | |
NZ | H19 | sing | 0.97Å | 1.00Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O | C | CA | 120.6° | 120.0° |
O | C | OXT | 123.1° | 120.0° |
N | CA | CB | 106.2° | 109.5° |
N | CA | C | 109.9° | 109.5° |
CA | N | H | 109.5° | 111.0° |
CA | N | H2 | 109.4° | 111.0° |
N | CA | HA | 110.9° | 109.4° |
CA | CB | CG | 110.6° | 109.5° |
CB | CA | C | 111.1° | 109.5° |
CB | CA | HA | 109.4° | 109.5° |
CA | CB | HB2 | 109.2° | 109.5° |
CA | CB | HB3 | 109.2° | 109.5° |
CB | CG | CD | 110.4° | 109.5° |
CG | CB | HB2 | 109.2° | 109.5° |
CG | CB | HB3 | 109.2° | 109.5° |
CB | CG | HG2 | 109.2° | 109.4° |
CB | CG | HG3 | 109.2° | 109.5° |
CA | C | OXT | 116.3° | 120.0° |
C | CA | HA | 109.3° | 109.5° |
CG | CD | CE | 111.4° | 109.5° |
CD | CG | HG2 | 109.2° | 109.4° |
CD | CG | HG3 | 109.2° | 109.5° |
CG | CD | HD2 | 109.0° | 109.4° |
CG | CD | HD3 | 109.0° | 109.5° |
CD | CE | NZ | 107.4° | 109.5° |
CE | CD | HD2 | 109.0° | 109.4° |
CE | CD | HD3 | 109.0° | 109.5° |
CD | CE | HE2 | 110.0° | 109.5° |
CD | CE | HE3 | 110.0° | 109.5° |
CE | NZ | C1 | 118.9° | 120.0° |
NZ | CE | HE2 | 110.0° | 109.5° |
NZ | CE | HE3 | 110.0° | 109.5° |
CE | NZ | H19 | 120.5° | 120.0° |
NZ | C1 | C2 | 118.9° | 120.0° |
NZ | C1 | O1 | 119.3° | 120.0° |
C1 | NZ | H19 | 120.5° | 120.0° |
C1 | C2 | C3 | 108.6° | 109.5° |
C2 | C1 | O1 | 121.8° | 120.0° |
C1 | C2 | H22 | 109.7° | 109.5° |
C1 | C2 | H23 | 109.7° | 109.5° |
C2 | C3 | C4 | 109.5° | 109.5° |
C2 | C3 | O2 | 108.3° | 109.5° |
C3 | C2 | H22 | 109.7° | 109.5° |
C3 | C2 | H23 | 109.7° | 109.4° |
C2 | C3 | H32 | 109.1° | 109.5° |
C4 | C3 | O2 | 110.0° | 109.4° |
C4 | C3 | H32 | 109.1° | 109.5° |
C3 | C4 | H41 | 109.5° | 109.4° |
C3 | C4 | H42 | 109.5° | 109.5° |
C3 | C4 | H43 | 109.5° | 109.4° |
O2 | C3 | H32 | 110.7° | 109.4° |
C3 | O2 | HO2 | 109.5° | 114.0° |
C | OXT | HXT | 109.5° | 117.0° |
H | N | H2 | 109.5° | 111.1° |
HB2 | CB | HB3 | 109.5° | 109.5° |
HG2 | CG | HG3 | 109.4° | 109.5° |
HD2 | CD | HD3 | 109.4° | 109.5° |
HE2 | CE | HE3 | 109.5° | 109.5° |
H22 | C2 | H23 | 109.5° | 109.4° |
H41 | C4 | H42 | 109.5° | 109.5° |
H41 | C4 | H43 | 109.4° | 109.5° |
H42 | C4 | H43 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O | C | CA | N | 55.5° | 20.0° |
O | C | CA | CB | 61.7° | 100.0° |
O | C | CA | OXT | 179.7° | 179.9° |
O | C | CA | HA | 177.4° | 140.0° |
O | C | OXT | HXT | 0.0° | 0.0° |
N | CA | CB | C | 119.4° | 120.0° |
N | CA | CB | HA | 119.8° | 119.9° |
N | CA | CB | CG | 174.4° | 65.0° |
N | CA | C | HA | 121.9° | 120.0° |
N | CA | C | OXT | 124.1° | 160.0° |
CA | N | H | H2 | 120.0° | 124.0° |
N | CA | CB | HB2 | 65.4° | 55.0° |
N | CA | CB | HB3 | 54.3° | 175.0° |
CA | CB | CG | HB2 | 120.2° | 120.0° |
CA | CB | CG | HB3 | 120.2° | 120.0° |
CB | CA | C | HA | 120.8° | 120.0° |
CA | CB | CG | CD | 172.3° | 180.0° |
CB | CA | C | OXT | 118.6° | 79.9° |
CB | CA | N | H | 180.0° | 60.0° |
CB | CA | N | H2 | 60.0° | 64.0° |
CA | CB | HB2 | HB3 | 119.5° | 120.0° |
CA | CB | CG | HG2 | 67.5° | 60.0° |
CA | CB | CG | HG3 | 52.1° | 60.0° |
CG | CB | CA | C | 55.0° | 175.0° |
CB | CG | CD | HG2 | 120.2° | 119.9° |
CB | CG | CD | HG3 | 120.2° | 120.0° |
CB | CG | CD | CE | 167.8° | 180.0° |
CG | CB | CA | HA | 65.7° | 55.0° |
CG | CB | HB2 | HB3 | 119.5° | 120.0° |
CB | CG | HG2 | HG3 | 119.6° | 120.0° |
CB | CG | CD | HD2 | 71.9° | 60.1° |
CB | CG | CD | HD3 | 47.5° | 60.0° |
C | CA | N | H | 59.8° | 60.0° |
C | CA | N | H2 | 60.2° | 176.0° |
C | CA | CB | HB2 | 175.2° | 65.0° |
C | CA | CB | HB3 | 65.2° | 55.0° |
CA | C | OXT | HXT | 179.6° | 180.0° |
CG | CD | CE | HD2 | 120.3° | 119.9° |
CG | CD | CE | HD3 | 120.3° | 120.0° |
CG | CD | CE | NZ | 178.7° | 180.0° |
CD | CG | CB | HB2 | 52.1° | 60.0° |
CD | CG | CB | HB3 | 67.5° | 60.0° |
CD | CG | HG2 | HG3 | 119.5° | 120.1° |
CG | CD | HD2 | HD3 | 119.1° | 120.1° |
CG | CD | CE | HE2 | 59.1° | 60.0° |
CG | CD | CE | HE3 | 61.6° | 60.0° |
CD | CE | NZ | HE2 | 119.7° | 120.0° |
CD | CE | NZ | HE3 | 119.7° | 120.0° |
CD | CE | NZ | C1 | 158.3° | 180.0° |
CE | CD | CG | HG2 | 47.6° | 60.1° |
CE | CD | CG | HG3 | 72.0° | 60.0° |
CE | CD | HD2 | HD3 | 119.1° | 120.0° |
CD | CE | HE2 | HE3 | 121.0° | 120.0° |
CD | CE | NZ | H19 | 21.8° | 0.0° |
CE | NZ | C1 | H19 | 180.0° | 180.0° |
CE | NZ | C1 | C2 | 179.7° | 180.0° |
CE | NZ | C1 | O1 | 0.0° | 0.0° |
NZ | CE | CD | HD2 | 61.0° | 60.0° |
NZ | CE | CD | HD3 | 58.4° | 60.0° |
NZ | CE | HE2 | HE3 | 121.0° | 120.0° |
NZ | C1 | C2 | O1 | 179.7° | 180.0° |
NZ | C1 | C2 | C3 | 140.0° | 180.0° |
C1 | NZ | CE | HE2 | 82.1° | 60.0° |
C1 | NZ | CE | HE3 | 38.6° | 60.0° |
NZ | C1 | C2 | H22 | 20.1° | 60.0° |
NZ | C1 | C2 | H23 | 100.1° | 60.0° |
C1 | C2 | C3 | H22 | 119.9° | 120.1° |
C1 | C2 | C3 | H23 | 119.9° | 120.0° |
C1 | C2 | C3 | C4 | 174.0° | 175.0° |
C1 | C2 | C3 | O2 | 54.0° | 65.0° |
C1 | C2 | H22 | H23 | 120.4° | 120.0° |
C1 | C2 | C3 | H32 | 66.7° | 55.0° |
C2 | C1 | NZ | H19 | 0.3° | 0.0° |
C3 | C2 | C1 | O1 | 39.7° | 0.0° |
C2 | C3 | C4 | O2 | 119.0° | 120.0° |
C2 | C3 | C4 | H32 | 119.4° | 120.1° |
C2 | C3 | O2 | H32 | 119.6° | 120.0° |
C3 | C2 | H22 | H23 | 120.4° | 120.0° |
C2 | C3 | C4 | H41 | 180.0° | 60.0° |
C2 | C3 | C4 | H42 | 60.0° | 180.0° |
C2 | C3 | C4 | H43 | 60.0° | 60.0° |
C2 | C3 | O2 | HO2 | 54.0° | 180.0° |
O1 | C1 | C2 | H22 | 159.5° | 120.0° |
O1 | C1 | C2 | H23 | 80.2° | 120.0° |
O1 | C1 | NZ | H19 | 180.0° | 180.0° |
C4 | C3 | O2 | H32 | 120.7° | 119.9° |
C4 | C3 | C2 | H22 | 54.1° | 65.0° |
C4 | C3 | C2 | H23 | 66.2° | 55.0° |
C3 | C4 | H41 | H42 | 120.0° | 120.0° |
C3 | C4 | H41 | H43 | 120.0° | 119.9° |
C3 | C4 | H42 | H43 | 120.0° | 120.0° |
C4 | C3 | O2 | HO2 | 173.7° | 60.0° |
O2 | C3 | C2 | H22 | 65.9° | 55.0° |
O2 | C3 | C2 | H23 | 173.8° | 175.0° |
O2 | C3 | C4 | H41 | 61.0° | 180.0° |
O2 | C3 | C4 | H42 | 59.0° | 60.0° |
O2 | C3 | C4 | H43 | 179.0° | 60.0° |
OXT | C | CA | HA | 2.2° | 40.1° |
H | N | CA | HA | 61.1° | 180.0° |
H2 | N | CA | HA | 178.8° | 56.0° |
HA | CA | CB | HB2 | 54.4° | 175.0° |
HA | CA | CB | HB3 | 174.1° | 65.0° |
HB2 | CB | CG | HG2 | 172.3° | 180.0° |
HB2 | CB | CG | HG3 | 68.0° | 60.0° |
HB3 | CB | CG | HG2 | 52.6° | 60.0° |
HB3 | CB | CG | HG3 | 172.3° | 180.0° |
HG2 | CG | CD | HD2 | 168.0° | 180.0° |
HG2 | CG | CD | HD3 | 72.6° | 59.9° |
HG3 | CG | CD | HD2 | 48.3° | 59.9° |
HG3 | CG | CD | HD3 | 167.7° | 180.0° |
HD2 | CD | CE | HE2 | 179.4° | 180.0° |
HD2 | CD | CE | HE3 | 58.7° | 60.0° |
HD3 | CD | CE | HE2 | 61.2° | 60.0° |
HD3 | CD | CE | HE3 | 178.1° | 180.0° |
HE2 | CE | NZ | H19 | 97.9° | 120.0° |
HE3 | CE | NZ | H19 | 141.4° | 120.0° |
H22 | C2 | C3 | H32 | 173.5° | 175.0° |
H23 | C2 | C3 | H32 | 53.2° | 65.0° |
H32 | C3 | C4 | H41 | 60.6° | 60.1° |
H32 | C3 | C4 | H42 | 179.4° | 60.0° |
H32 | C3 | C4 | H43 | 59.4° | 180.0° |
H32 | C3 | O2 | HO2 | 65.6° | 59.9° |
H41 | C4 | H42 | H43 | 119.9° | 120.0° |