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KH3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.35ÅAromatic
N1C6sing1.33Å1.35ÅAromatic
N6C6sing1.38Å1.36Å
C2N3sing1.32Å1.34ÅAromatic
C6C5doub1.40Å1.48ÅAromatic
N3C4doub1.33Å1.35ÅAromatic
C5C4sing1.41Å1.47ÅAromatic
C5N7sing1.35Å1.34ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
N7C8doub1.30Å1.35ÅAromatic
NCAsing1.47Å1.45Å
N9C8sing1.36Å1.35ÅAromatic
N9C1'sing1.46Å1.48Å
OCdoub1.21Å1.25Å
C1'O4'sing1.44Å1.43Å
C1'C2'sing1.55Å1.51Å
CACsing1.51Å1.51Å
CACBsing1.53Å1.53Å
COXTsing1.34Å1.25Å
O4'C4'sing1.44Å1.43Å
CBCGsing1.53Å1.52Å
CGNDsing1.47Å1.47Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.51Å
C4'C5'sing1.53Å1.52Å
C4'C3'sing1.55Å1.52Å
NDC5'sing1.47Å1.48Å
NDCEsing1.47Å1.46Å
C3'O3'sing1.43Å1.43Å
CEC11sing1.53Å1.52Å
C11N12sing1.47Å1.47Å
N12C13sing1.47Å1.48Å
C13C14sing1.53Å1.52Å
C16C17sing1.53Å1.53Å
C16C15sing1.53Å1.52Å
C14C15sing1.53Å1.53Å
C17C18sing1.53Å1.51Å
CAH1sing1.09Å1.10Å
NH2sing1.01Å1.00Å
NH3sing1.01Å1.00Å
CBH5sing1.09Å1.10Å
CBH6sing1.09Å1.10Å
CGH7sing1.09Å1.10Å
CGH8sing1.09Å1.10Å
CEH10sing1.09Å1.10Å
CEH11sing1.09Å1.10Å
C11H12sing1.09Å1.10Å
C11H13sing1.09Å1.10Å
N12H14sing1.01Å1.00Å
C13H16sing1.09Å1.10Å
C13H17sing1.09Å1.10Å
C14H18sing1.09Å1.10Å
C14H19sing1.09Å1.10Å
C15H20sing1.09Å1.10Å
C15H21sing1.09Å1.10Å
C16H22sing1.09Å1.10Å
C16H23sing1.09Å1.10Å
C17H24sing1.09Å1.10Å
C17H25sing1.09Å1.10Å
C18H26sing1.09Å1.10Å
C18H27sing1.09Å1.10Å
C18H28sing1.09Å1.10Å
C5'H29sing1.09Å1.10Å
C5'H30sing1.09Å1.10Å
C4'H31sing1.09Å1.10Å
C1'H32sing1.09Å1.10Å
C2'H33sing1.09Å1.10Å
O2'H34sing0.97Å0.95Å
C3'H35sing1.09Å1.10Å
O3'H36sing0.97Å0.95Å
C8H37sing1.08Å1.08Å
N6H38sing0.97Å1.00Å
N6H39sing0.97Å1.00Å
C2H40sing1.08Å1.08Å
OXTH41sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6122.5°121.2°
N1C2N3123.5°122.4°
N1C2H40118.3°118.8°
N1C6N6121.9°120.7°
N1C6C5117.1°118.5°
N6C6C5121.1°120.8°
C6N6H38109.5°120.0°
C6N6H39109.5°120.0°
C2N3C4120.4°120.7°
N3C2H40118.2°118.8°
C6C5C4117.3°118.1°
C6C5N7136.1°134.7°
N3C4C5119.3°119.1°
N3C4N9134.5°135.0°
C4C5N7106.7°107.1°
C5C4N9106.2°106.0°
C5N7C8107.5°109.5°
C4N9C8108.6°107.5°
C4N9C1'124.3°126.2°
N7C8N9111.0°110.0°
N7C8H37124.5°125.0°
NCAC109.9°109.5°
NCACB109.5°109.5°
NCAH1109.9°109.5°
CANH2109.5°111.0°
CANH3109.5°111.0°
C8N9C1'127.0°126.3°
N9C8H37124.5°125.0°
N9C1'O4'109.3°110.4°
N9C1'C2'110.2°110.4°
N9C1'H32110.5°110.5°
OCCA118.9°120.0°
OCOXT123.0°120.0°
O4'C1'C2'105.2°104.8°
C1'O4'C4'110.4°105.3°
O4'C1'H32111.3°110.4°
C1'C2'O2'107.8°110.5°
C1'C2'C3'103.0°104.1°
C2'C1'H32110.1°110.3°
C1'C2'H33111.4°110.5°
CCACB109.5°109.5°
CACOXT118.1°120.0°
CCAH1109.1°109.4°
CACBCG111.7°109.5°
CBCAH1108.9°109.5°
CACBH5108.9°109.5°
CACBH6108.9°109.5°
COXTH41109.5°117.0°
O4'C4'C5'107.1°110.4°
O4'C4'C3'106.4°104.8°
O4'C4'H31110.4°110.5°
CBCGND106.9°109.5°
CGCBH5108.9°109.4°
CGCBH6108.9°109.5°
CBCGH7110.1°109.4°
CBCGH8110.1°109.5°
CGNDC5'111.9°111.0°
CGNDCE106.8°111.0°
NDCGH7110.1°109.5°
NDCGH8110.1°109.5°
O2'C2'C3'110.2°110.5°
O2'C2'H33112.6°110.4°
C2'O2'H34109.5°114.0°
C2'C3'C4'102.8°104.0°
C2'C3'O3'110.4°110.5°
C3'C2'H33111.4°110.6°
C2'C3'H35110.2°110.5°
C5'C4'C3'114.7°110.4°
C4'C5'ND106.8°109.5°
C4'C5'H29110.1°109.5°
C4'C5'H30110.1°109.5°
C5'C4'H31109.1°110.3°
C4'C3'O3'111.8°110.5°
C3'C4'H31109.1°110.4°
C4'C3'H35110.0°110.5°
C5'NDCE110.5°111.0°
NDC5'H29110.2°109.4°
NDC5'H30110.1°109.5°
NDCEC11110.0°109.5°
NDCEH10109.4°109.5°
NDCEH11109.3°109.5°
O3'C3'H35111.3°110.6°
C3'O3'H36109.5°114.0°
CEC11N12114.7°109.5°
C11CEH10109.3°109.5°
C11CEH11109.3°109.4°
CEC11H12108.2°109.4°
CEC11H13108.1°109.4°
C11N12C13103.8°111.0°
N12C11H12108.2°109.5°
N12C11H13108.2°109.5°
C11N12H14110.8°111.0°
N12C13C14113.5°109.5°
C13N12H14110.9°111.0°
N12C13H16108.5°109.5°
N12C13H17108.5°109.5°
C13C14C15111.2°109.5°
C14C13H16108.4°109.5°
C14C13H17108.4°109.5°
C13C14H18109.1°109.5°
C13C14H19109.0°109.4°
C17C16C15110.8°109.4°
C16C17C18111.8°109.5°
C17C16H22109.1°109.5°
C17C16H23109.2°109.5°
C16C17H24108.9°109.5°
C16C17H25108.9°109.5°
C16C15C14112.0°109.4°
C16C15H20108.8°109.5°
C16C15H21108.8°109.5°
C15C16H22109.1°109.5°
C15C16H23109.1°109.5°
C15C14H18109.0°109.5°
C15C14H19109.0°109.5°
C14C15H20108.9°109.5°
C14C15H21108.9°109.5°
C18C17H24108.9°109.5°
C18C17H25108.9°109.5°
C17C18H26109.5°109.5°
C17C18H27109.4°109.5°
C17C18H28109.5°109.4°
H2NH3109.5°111.0°
H5CBH6109.5°109.4°
H7CGH8109.5°109.5°
H10CEH11109.5°109.4°
H12C11H13109.4°109.4°
H16C13H17109.5°109.4°
H18C14H19109.5°109.5°
H20C15H21109.4°109.5°
H22C16H23109.5°109.4°
H24C17H25109.5°109.5°
H26C18H27109.5°109.5°
H26C18H28109.4°109.5°
H27C18H28109.5°109.5°
H29C5'H30109.5°109.4°
H38N6H39109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6N6179.8°179.2°
N1C2N3H40180.0°179.1°
C2N1C6C50.3°0.8°
N1C2N3C40.3°0.9°
N1C6N6C5179.8°180.0°
C6N1C2N30.2°1.2°
N1C6C5C40.0°0.0°
N1C6C5N7179.9°179.4°
N1C6N6H380.0°180.0°
N1C6N6H39120.0°0.0°
C6N1C2H40179.8°179.6°
N6C6C5C4179.8°180.0°
N6C6C5N70.1°0.6°
C6N6H38H39120.0°180.0°
C2N3C4C50.6°0.1°
C2N3C4N9179.1°179.5°
C6C5C4N30.5°0.4°
C6C5C4N7179.9°179.6°
C6C5C4N9179.3°179.9°
C6C5N7C8179.7°179.7°
C5C6N6H38179.8°0.0°
C5C6N6H3959.8°180.0°
N3C4C5N9178.9°179.7°
N3C4C5N7179.6°179.9°
N3C4N9C8179.4°180.0°
N3C4N9C1'2.3°0.3°
C4N3C2H40179.7°180.0°
C4C5N7C80.4°0.2°
C5C4N9C80.8°0.4°
C5C4N9C1'179.1°179.9°
N7C5C4N90.7°0.4°
C5N7C8N90.1°0.0°
C5N7C8H37179.9°179.9°
C4N9C8N70.6°0.2°
C4N9C8C1'178.2°179.7°
C4N9C1'O4'161.3°154.5°
C4N9C1'C2'83.5°90.1°
C4N9C1'H3238.5°32.2°
C4N9C8H37179.4°179.8°
N7C8N9H37180.0°179.9°
N7C8N9C1'178.8°180.0°
NCACO8.8°20.0°
NCACCB120.4°120.0°
NCACH1120.5°120.0°
NCACBH1120.1°120.0°
NCACOXT171.9°160.3°
NCACBCG79.7°63.9°
CANH2H3120.0°124.0°
NCACBH540.6°56.1°
NCACBH6159.9°176.0°
C8N9C1'O4'16.6°25.8°
C8N9C1'C2'98.6°89.6°
C8N9C1'H32139.5°148.1°
N9C1'O4'C2'118.4°118.8°
N9C1'O4'H32122.4°122.4°
N9C1'C2'H32122.2°122.4°
N9C1'O4'C4'100.7°159.3°
N9C1'C2'O2'158.1°98.5°
N9C1'C2'C3'85.5°142.8°
N9C1'C2'H3334.0°24.0°
C1'N9C8H371.2°0.1°
OCCAOXT179.3°179.7°
OCCACB129.1°100.0°
OCCAH1111.8°140.0°
OCOXTH410.0°0.0°
O4'C1'C2'H32120.1°118.8°
O4'C1'C2'O2'84.2°142.6°
O4'C1'C2'C3'32.3°24.0°
C1'O4'C4'C5'127.2°159.4°
C1'O4'C4'C3'4.1°40.5°
C1'O4'C4'H31114.1°78.4°
O4'C1'C2'H33151.8°94.8°
C2'C1'O4'C4'17.7°40.5°
C1'C2'O2'C3'111.7°114.7°
C1'C2'O2'H33123.2°122.6°
C1'C2'C3'H33119.5°118.7°
C1'C2'C3'C4'33.9°0.0°
C1'C2'C3'O3'153.3°118.7°
C1'C2'O2'H34180.0°180.0°
C1'C2'C3'H3583.3°118.6°
CCACBH1119.2°120.0°
CCACBCG159.6°176.0°
CCANH2180.0°59.7°
CCANH360.0°64.2°
CCACBH580.0°64.0°
CCACBH639.3°56.0°
CACOXTH41179.3°179.7°
CBCACOXT51.5°79.7°
CACBCGH5120.3°120.0°
CACBCGH6120.4°120.1°
CACBCGND65.8°174.0°
CBCANH259.6°179.8°
CBCANH3179.6°55.8°
CACBH5H6119.0°120.0°
CACBCGH753.8°54.0°
CACBCGH8174.6°65.9°
OXTCCAH167.6°40.3°
O4'C4'C3'C2'24.1°24.0°
O4'C4'C5'C3'117.8°115.4°
O4'C4'C5'H31119.5°122.3°
O4'C4'C3'H31119.0°119.0°
O4'C4'C5'ND77.0°72.3°
O4'C4'C3'O3'142.5°142.6°
O4'C4'C5'H29163.4°47.7°
O4'C4'C5'H3042.6°167.7°
C4'O4'C1'H32137.0°78.3°
O4'C4'C3'H3593.2°94.6°
CBCGNDH7119.6°120.0°
CBCGNDH8119.6°120.0°
CBCGNDC5'142.4°58.6°
CBCGNDCE96.6°65.4°
CGCBCAH140.4°56.1°
CGCBH5H6118.9°119.9°
CBCGH7H8121.2°120.0°
CGNDC5'C4'103.4°77.3°
CGNDC5'CE118.9°124.0°
CGNDCEC1197.7°71.4°
NDCGCBH5173.9°65.9°
NDCGCBH654.6°54.0°
NDCGH7H8121.2°120.0°
CGNDCEH1022.3°168.6°
CGNDCEH11142.2°48.6°
CGNDC5'H29137.1°42.7°
CGNDC5'H3016.2°162.7°
O2'C2'C3'H33125.8°122.7°
O2'C2'C3'C4'80.9°118.7°
O2'C2'C3'O3'38.5°0.0°
O2'C2'C1'H3235.9°23.8°
O2'C2'C3'H35161.9°122.7°
C2'C3'C4'C5'142.3°142.8°
C2'C3'C4'O3'118.4°118.6°
C2'C3'C4'H35117.3°118.7°
C2'C3'O3'H35122.7°122.7°
C2'C3'C4'H3194.9°94.9°
C3'C2'C1'H32152.3°94.9°
C3'C2'O2'H3468.3°65.3°
C2'C3'O3'H36180.0°65.4°
C5'C4'C3'H31122.7°122.2°
C4'C5'NDH29119.6°120.0°
C4'C5'NDH30119.5°120.0°
C4'C5'NDCE137.7°158.7°
C5'C4'C3'O3'99.3°98.6°
C4'C5'H29H30121.2°120.0°
C5'C4'C3'H3525.0°24.2°
C3'C4'C5'ND165.2°172.3°
C4'C3'O3'H35123.6°122.7°
C3'C4'C5'H2945.6°67.7°
C3'C4'C5'H3075.3°52.3°
C4'C3'C2'H33153.3°118.7°
C4'C3'O3'H3666.2°180.0°
C5'NDCEC1124.2°164.7°
C5'NDCGH722.8°178.6°
C5'NDCGH898.0°61.4°
C5'NDCEH10144.3°44.6°
C5'NDCEH1195.9°75.4°
NDC5'H29H30121.3°120.0°
NDC5'C4'H3142.5°50.1°
NDCEC11H10120.1°120.0°
NDCEC11H11120.1°120.0°
NDCEC11N12166.7°175.8°
CENDCGH7143.9°54.6°
CENDCGH823.1°174.6°
NDCEH10H11119.8°120.0°
NDCEC11H1272.5°55.7°
NDCEC11H1345.9°64.2°
CENDC5'H2918.2°81.3°
CENDC5'H30102.7°38.7°
O3'C3'C4'H3123.4°23.7°
O3'C3'C2'H3387.2°122.7°
CEC11N12H12120.8°120.0°
CEC11N12H13120.8°120.0°
CEC11N12C13171.0°180.0°
C11CEH10H11119.7°120.0°
CEC11H12H13117.6°119.9°
CEC11N12H1469.9°56.1°
C11N12C13H14119.1°124.0°
C11N12C13C14168.5°180.0°
N12C11CEH1046.6°64.2°
N12C11CEH1173.2°55.8°
N12C11H12H13117.6°120.1°
C11N12C13H1670.9°60.0°
C11N12C13H1747.9°60.0°
N12C13C14H16120.6°120.0°
N12C13C14H17120.6°120.0°
N12C13C14C15163.8°180.0°
C13N12C11H1250.3°60.0°
C13N12C11H1368.2°60.0°
N12C13H16H17118.2°120.0°
N12C13C14H1875.9°60.0°
N12C13C14H1943.6°60.0°
C13C14C15C1668.8°180.0°
C13C14C15H18120.3°120.0°
C13C14C15H19120.3°119.9°
C14C13N12H1449.4°56.0°
C14C13H16H17118.1°120.0°
C13C14H18H19119.2°120.0°
C13C14C15H2051.6°60.0°
C13C14C15H21170.9°60.0°
C17C16C15H22120.2°120.0°
C17C16C15H23120.2°120.0°
C17C16C15C14172.6°NaN°
C16C17C18H24120.3°120.0°
C16C17C18H25120.4°120.0°
C17C16C15H2067.0°60.0°
C17C16C15H2152.2°60.0°
C17C16H22H23119.4°120.0°
C16C17H24H25118.9°120.0°
C16C17C18H26180.0°180.0°
C16C17C18H2760.0°59.9°
C16C17C18H2860.0°60.0°
C16C15C14H20120.4°120.0°
C16C15C14H21120.4°120.0°
C15C16C17C1878.2°180.0°
C16C15C14H1851.5°60.0°
C16C15C14H19171.0°60.1°
C16C15H20H21118.8°120.0°
C15C16H22H23119.4°120.0°
C15C16C17H2442.1°60.0°
C15C16C17H25161.4°60.0°
C15C14C13H1643.2°59.9°
C15C14C13H1775.6°60.0°
C15C14H18H19119.2°120.1°
C14C15H20H21118.9°120.0°
C14C15C16H2252.4°60.0°
C14C15C16H2367.2°60.0°
C18C17C16H2242.0°60.0°
C18C17C16H23161.6°60.0°
C18C17H24H25118.9°120.0°
C17C18H26H27120.0°120.0°
C17C18H26H28120.0°119.9°
C17C18H27H28120.0°119.9°
H1CANH259.9°60.2°
H1CANH360.1°175.8°
H1CACBH5160.7°176.1°
H1CACBH680.0°64.0°
H5CBCGH766.5°174.1°
H5CBCGH854.3°54.1°
H6CBCGH7174.2°66.0°
H6CBCGH865.0°174.0°
H10CEC11H12167.4°175.7°
H10CEC11H1374.2°55.8°
H11CEC11H1247.6°64.3°
H11CEC11H13166.0°175.8°
H12C11N12H14169.3°176.1°
H13C11N12H1450.9°63.9°
H14N12C13H16170.0°176.0°
H14N12C13H1771.2°64.0°
H16C13C14H18163.5°180.0°
H16C13C14H1977.0°60.0°
H17C13C14H1844.7°60.0°
H17C13C14H19164.2°180.0°
H18C14C15H20171.9°180.0°
H18C14C15H2168.9°60.0°
H19C14C15H2068.6°59.9°
H19C14C15H2150.6°179.9°
H20C15C16H22172.8°180.0°
H20C15C16H2353.2°60.0°
H21C15C16H2268.0°60.0°
H21C15C16H23172.4°180.0°
H22C16C17H24162.3°179.9°
H22C16C17H2578.4°60.0°
H23C16C17H2478.1°60.0°
H23C16C17H2541.2°180.0°
H24C17C18H2659.6°60.0°
H24C17C18H27179.6°180.0°
H24C17C18H2860.4°60.0°
H25C17C18H2659.7°60.1°
H25C17C18H2760.3°60.0°
H25C17C18H28179.7°180.0°
H26C18H27H28120.0°120.0°
H29C5'C4'H3177.1°170.0°
H30C5'C4'H31162.0°70.0°
H31C4'C3'H35147.7°146.4°
H32C1'C2'H3388.2°146.4°
H33C2'O2'H3456.7°57.5°
H33C2'C3'H3536.1°0.1°
H35C3'O3'H3657.3°57.4°

249697

PDB entries from 2026-02-25

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